jgi.p|Nanoce1779_2|575442, mRNA_1130 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575442
Unique Name	mRNA_1130
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2051
Alignment location	scaffold_2:1302199..1304431 +

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Properties


Property Name	Value
TranscriptId	575528
Track	FilteredModels2
ProteinId	575442

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1302199..1304431 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575442	gene_1130	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575442	mRNA_1130-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1130	CDS_1130	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1302199..1304431+
coding sequence from alignment at scaffold_2:1302199..1304431+

mRNA sequence

>mRNA_1130 ID=mRNA_1130|Name=jgi.p|Nanoce1779_2|575442|organism=Nannochloropsis oceanica|type=mRNA|length=2051bp
CATTCCCGCCAGCGACCCCCACCACGCCCCAGATAAGGTCTCCGAAGGGC
TGTGTTGTTGTCATGAGGGCCCACGCGAGCTGTATGGCTGCTCTGGATTT
TAAGGCGCTGCTCCAGCAGGAGAGGGCCCAGAAGCGCCACGAACGAGAGC
GGCAGCAGAAGGAGGTAGCCTCGGAGGAGGAGGATGACGACGACGAGGAA
TACAAGGCGCCAGCCAACTTTGCTGCCCGCGTAGATGCCATGCTGGGTGC
CGTGGTCACATCCAACGTGTCTCCTGCGGTGACTTTGCCGGAAGAAGGGC
AAGATATGGATATCATGGCTGTAGCGGCGGCAAAAATCGTGGAAGAAAGC
CAGCAGGCAAAGCACTGCTTGCATGCGCGCTTGGAACCCGAGTACCTCAG
CACGGCCATGACAGAACGCAACCTGGCCCAGCACGCGTTGGTCGGACCAC
TGCATCGTGTTTTTTATTTGCCTGAGTACGTGTCCCGGGAGCTGGAAGAG
AAGGTGGTGGAGATCACGCACACAATGCCAGCCAAGCAGTGGGTTACTCT
AAGGGGCCGTCGTCTGCAGTGCTTTGGGGGCAAGCCGACGGAGGACGTGG
CGAGCTTCAAGCCCAAGGTTTTGCCTCCGTGGATCAAGCAATTGTGTCAG
ACCTTGACGTTGGCGGGCATATTCGGCATGGAGGAGACGCCAGACCATGT
CCTCTTGAACGAATACCAGCCAGGGCAAGGCATCATGGCACACACCGACG
GTCCCTTTTTCCGCTCCCGCGTCGCTATCCTGAGCCTGGGAGGCCCAGCC
ATTTTTCGTTTCAAGCGGCGGCTGGCCACGGCAGAGATCGAGGGAGGAAA
GGAAGACGAACAGCAGCGGCCGGTGGGTACGGTGGTTTTGCAGCCCCGCA
GTCTCATTGTGTTTGAAGGCGACGCCTACCACGAACACATGCATGAAATC
CTGGCGGTAGAGGAGGAGATGGTGGGAGGGGAAGAAGGCATCACACCAGT
TTTGAATCTTGCGACGGCAGGGGAGGGTTTGAAGGTAGGGGACGTTCTGC
GGCGGGCATTGCGGGTGTCATTGACGTTTCGTAAAGTCAACAAGCCCGAG
CAAGAAAGATGTGTGGCGCGGTTGTCATCGCAGACCAAATAAGAAGCAAA
TTGTCGGATGTATCAGAAGTCAGAGGATCGTTTGTCACTTAACCACGATT
TGCTCAGATGTTTATTTAACAAGGGGCGCAATGGGATGGGAAAGAATGGC
GGTCCAATAAAAAATTACACAATGCCCTTGTGTTGCTTCTACAGTAATAG
CGTCCATGAATAACTGCAGGGCAGGGTCAGTGGTATATGGTGGACGAAGT
GGCTCTTAATCAGAGATGGAATGCCGGGTCAGGTTATGATGTCCGGAGGT
GCTTTCTGATGGGGTGTGGAGGCAGGGGGGGACAGAAGAGTTCATATTCC
CCACGTTTCTTTGCTTTGCATGCTCGGAACTTTCTTTATATTTAAACAAG
ATGCACAGATGATTTCGAGCTGTCAATGGCGTCTCGGAAAATGTGCACAG
CGGTCACTCACGGATGTGCTAAGAGGATCATATGGGCCGGTCGGTCCCAG
AGGAAAGTCTCTCGAGCGCGACGAACGCTCGAGCTAAGAGATCCACATCA
GCCAATGCGCTCAATTAGCGTGGGATTCATGGTACTTGGTCCCGCGAGCA
TCTTTGTGCATGTTTGGCACGATATTGGGTGTGGTTGATGTGCGTTTCAA
GCGAGCTTGAGCCCCTTCGTCTCTGCCCATGTCTGTTGCCTCGTCACCTC
CTCGACGAAAGCAGAGAGCAAATGCTGCGTCACCCCCAGGTGTATTGCCG
GCCCCCCTTCCTCTTTCTTTTTTACAAGCGCCCGCGCTCCTTCCTGCTTC
TTGATGTTGGTACCTGGCATTATTGCGTGCACTTTCGATGTGTCTCTCCT
TTTATCATCATTCTCTCTTCCGGCATTCACGCACACAACATGACAGCCTC
GTCACATCGCGATCGCCCAAGGAGTCCGCCGACCGTCGCGGTGCCAGCAG
C

protein sequence of jgi.p|Nanoce1779_2|575442

>mRNA_1130-protein ID=mRNA_1130-protein|Name=jgi.p|Nanoce1779_2|575442|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MRAHASCMAALDFKALLQQERAQKRHERERQQKEVASEEEDDDDEEYKAP
ANFAARVDAMLGAVVTSNVSPAVTLPEEGQDMDIMAVAAAKIVEESQQAK
HCLHARLEPEYLSTAMTERNLAQHALVGPLHRVFYLPEYVSRELEEKVVE
ITHTMPAKQWVTLRGRRLQCFGGKPTEDVASFKPKVLPPWIKQLCQTLTL
AGIFGMEETPDHVLLNEYQPGQGIMAHTDGPFFRSRVAILSLGGPAIFRF
KRRLATAEIEGGKEDEQQRPVGTVVLQPRSLIVFEGDAYHEHMHEILAVE
EEMVGGEEGITPVLNLATAGEGLKVGDVLRRALRVSLTFRKVNKPEQERC
VARLSSQTK*

mRNA from alignment at scaffold_2:1302199..1304431+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1130 ID=mRNA_1130|Name=jgi.p|Nanoce1779_2|575442|organism=Nannochloropsis oceanica|type=mRNA|length=2233bp|location=Sequence derived from alignment at scaffold_2:1302199..1304431+ (Nannochloropsis oceanica)
CATTCCCGCCAGCGACCCCCACCACGCCCCAGATAAGGTCTCCGAAGGGC
TGTGTTGTTGTCATGAGGGCCCACGCGAGCTGTATGGCTGTTTAGCGGGA
TTGGAGAGGTCGAGTAATTTTAGGAATGCTGCATAAATTTGAGTTTCAGG
TTTTAGCGAGCTACTTTCACTTCGGGAATGCTTCGGGCTTCATTGCTTAT
GTCCCTCTCACGAACTCGTACAATGATACGGACACAAACAAACAAGGGAC
ATCTGACCACCCTACATGCCTGCTCTGGATTTTAAGGCGCTGCTCCAGCA
GGAGAGGGCCCAGAAGCGCCACGAACGAGAGCGGCAGCAGAAGGAGGTAG
CCTCGGAGGAGGAGGATGACGACGACGAGGAATACAAGGCGCCAGCCAAC
TTTGCTGCCCGCGTAGATGCCATGCTGGGTGCCGTGGTCACATCCAACGT
GTCTCCTGCGGTGACTTTGCCGGAAGAAGGGCAAGATATGGATATCATGG
CTGTAGCGGCGGCAAAAATCGTGGAAGAAAGCCAGCAGGCAAAGCACTGC
TTGCATGCGCGCTTGGAACCCGAGTACCTCAGCACGGCCATGACAGAACG
CAACCTGGCCCAGCACGCGTTGGTCGGACCACTGCATCGTGTTTTTTATT
TGCCTGAGTACGTGTCCCGGGAGCTGGAAGAGAAGGTGGTGGAGATCACG
CACACAATGCCAGCCAAGCAGTGGGTTACTCTAAGGGGCCGTCGTCTGCA
GTGCTTTGGGGGCAAGCCGACGGAGGACGTGGCGAGCTTCAAGCCCAAGG
TTTTGCCTCCGTGGATCAAGCAATTGTGTCAGACCTTGACGTTGGCGGGC
ATATTCGGCATGGAGGAGACGCCAGACCATGTCCTCTTGAACGAATACCA
GCCAGGGCAAGGCATCATGGCACACACCGACGGTCCCTTTTTCCGCTCCC
GCGTCGCTATCCTGAGCCTGGGAGGCCCAGCCATTTTTCGTTTCAAGCGG
CGGCTGGCCACGGCAGAGATCGAGGGAGGAAAGGAAGACGAACAGCAGCG
GCCGGTGGGTACGGTGGTTTTGCAGCCCCGCAGTCTCATTGTGTTTGAAG
GCGACGCCTACCACGAACACATGCATGAAATCCTGGCGGTAGAGGAGGAG
ATGGTGGGAGGGGAAGAAGGCATCACACCAGTTTTGAATCTTGCGACGGC
AGGGGAGGGTTTGAAGGTAGGGGACGTTCTGCGGCGGGCATTGCGGGTGT
CATTGACGTTTCGTAAAGTCAACAAGCCCGAGCAAGAAAGATGTGTGGCG
CGGTTGTCATCGCAGACCAAATAAGAAGCAAATTGTCGGATGTATCAGAA
GTCAGAGGATCGTTTGTCACTTAACCACGATTTGCTCAGATGTTTATTTA
ACAAGGGGCGCAATGGGATGGGAAAGAATGGCGGTCCAATAAAAAATTAC
ACAATGCCCTTGTGTTGCTTCTACAGTAATAGCGTCCATGAATAACTGCA
GGGCAGGGTCAGTGGTATATGGTGGACGAAGTGGCTCTTAATCAGAGATG
GAATGCCGGGTCAGGTTATGATGTCCGGAGGTGCTTTCTGATGGGGTGTG
GAGGCAGGGGGGGACAGAAGAGTTCATATTCCCCACGTTTCTTTGCTTTG
CATGCTCGGAACTTTCTTTATATTTAAACAAGATGCACAGATGATTTCGA
GCTGTCAATGGCGTCTCGGAAAATGTGCACAGCGGTCACTCACGGATGTG
CTAAGAGGATCATATGGGCCGGTCGGTCCCAGAGGAAAGTCTCTCGAGCG
CGACGAACGCTCGAGCTAAGAGATCCACATCAGCCAATGCGCTCAATTAG
CGTGGGATTCATGGTACTTGGTCCCGCGAGCATCTTTGTGCATGTTTGGC
ACGATATTGGGTGTGGTTGATGTGCGTTTCAAGCGAGCTTGAGCCCCTTC
GTCTCTGCCCATGTCTGTTGCCTCGTCACCTCCTCGACGAAAGCAGAGAG
CAAATGCTGCGTCACCCCCAGGTGTATTGCCGGCCCCCCTTCCTCTTTCT
TTTTTACAAGCGCCCGCGCTCCTTCCTGCTTCTTGATGTTGGTACCTGGC
ATTATTGCGTGCACTTTCGATGTGTCTCTCCTTTTATCATCATTCTCTCT
TCCGGCATTCACGCACACAACATGACAGCCTCGTCACATCGCGATCGCCC
AAGGAGTCCGCCGACCGTCGCGGTGCCAGCAGC

Coding sequence (CDS) from alignment at scaffold_2:1302199..1304431+

>mRNA_1130 ID=mRNA_1130|Name=jgi.p|Nanoce1779_2|575442|organism=Nannochloropsis oceanica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_2:1302199..1304431+ (Nannochloropsis oceanica)
ATGAGGGCCCACGCGAGCTGTATGGCTGCTCTGGATTTTAAGGCGCTGCT
CCAGCAGGAGAGGGCCCAGAAGCGCCACGAACGAGAGCGGCAGCAGAAGG
AGGTAGCCTCGGAGGAGGAGGATGACGACGACGAGGAATACAAGGCGCCA
GCCAACTTTGCTGCCCGCGTAGATGCCATGCTGGGTGCCGTGGTCACATC
CAACGTGTCTCCTGCGGTGACTTTGCCGGAAGAAGGGCAAGATATGGATA
TCATGGCTGTAGCGGCGGCAAAAATCGTGGAAGAAAGCCAGCAGGCAAAG
CACTGCTTGCATGCGCGCTTGGAACCCGAGTACCTCAGCACGGCCATGAC
AGAACGCAACCTGGCCCAGCACGCGTTGGTCGGACCACTGCATCGTGTTT
TTTATTTGCCTGAGTACGTGTCCCGGGAGCTGGAAGAGAAGGTGGTGGAG
ATCACGCACACAATGCCAGCCAAGCAGTGGGTTACTCTAAGGGGCCGTCG
TCTGCAGTGCTTTGGGGGCAAGCCGACGGAGGACGTGGCGAGCTTCAAGC
CCAAGGTTTTGCCTCCGTGGATCAAGCAATTGTGTCAGACCTTGACGTTG
GCGGGCATATTCGGCATGGAGGAGACGCCAGACCATGTCCTCTTGAACGA
ATACCAGCCAGGGCAAGGCATCATGGCACACACCGACGGTCCCTTTTTCC
GCTCCCGCGTCGCTATCCTGAGCCTGGGAGGCCCAGCCATTTTTCGTTTC
AAGCGGCGGCTGGCCACGGCAGAGATCGAGGGAGGAAAGGAAGACGAACA
GCAGCGGCCGGTGGGTACGGTGGTTTTGCAGCCCCGCAGTCTCATTGTGT
TTGAAGGCGACGCCTACCACGAACACATGCATGAAATCCTGGCGGTAGAG
GAGGAGATGGTGGGAGGGGAAGAAGGCATCACACCAGTTTTGAATCTTGC
GACGGCAGGGGAGGGTTTGAAGGTAGGGGACGTTCTGCGGCGGGCATTGC
GGGTGTCATTGACGTTTCGTAAAGTCAACAAGCCCGAGCAAGAAAGATGT
GTGGCGCGGTTGTCATCGCAGACCAAATAAATGAGGGCCCACGCGAGCTG
TATGGCTGCTCTGGATTTTAAGGCGCTGCTCCAGCAGGAGAGGGCCCAGA
AGCGCCACGAACGAGAGCGGCAGCAGAAGGAGGTAGCCTCGGAGGAGGAG
GATGACGACGACGAGGAATACAAGGCGCCAGCCAACTTTGCTGCCCGCGT
AGATGCCATGCTGGGTGCCGTGGTCACATCCAACGTGTCTCCTGCGGTGA
CTTTGCCGGAAGAAGGGCAAGATATGGATATCATGGCTGTAGCGGCGGCA
AAAATCGTGGAAGAAAGCCAGCAGGCAAAGCACTGCTTGCATGCGCGCTT
GGAACCCGAGTACCTCAGCACGGCCATGACAGAACGCAACCTGGCCCAGC
ACGCGTTGGTCGGACCACTGCATCGTGTTTTTTATTTGCCTGAGTACGTG
TCCCGGGAGCTGGAAGAGAAGGTGGTGGAGATCACGCACACAATGCCAGC
CAAGCAGTGGGTTACTCTAAGGGGCCGTCGTCTGCAGTGCTTTGGGGGCA
AGCCGACGGAGGACGTGGCGAGCTTCAAGCCCAAGGTTTTGCCTCCGTGG
ATCAAGCAATTGTGTCAGACCTTGACGTTGGCGGGCATATTCGGCATGGA
GGAGACGCCAGACCATGTCCTCTTGAACGAATACCAGCCAGGGCAAGGCA
TCATGGCACACACCGACGGTCCCTTTTTCCGCTCCCGCGTCGCTATCCTG
AGCCTGGGAGGCCCAGCCATTTTTCGTTTCAAGCGGCGGCTGGCCACGGC
AGAGATCGAGGGAGGAAAGGAAGACGAACAGCAGCGGCCGGTGGGTACGG
TGGTTTTGCAGCCCCGCAGTCTCATTGTGTTTGAAGGCGACGCCTACCAC
GAACACATGCATGAAATCCTGGCGGTAGAGGAGGAGATGGTGGGAGGGGA
AGAAGGCATCACACCAGTTTTGAATCTTGCGACGGCAGGGGAGGGTTTGA
AGGTAGGGGACGTTCTGCGGCGGGCATTGCGGGTGTCATTGACGTTTCGT
AAAGTCAACAAGCCCGAGCAAGAAAGATGTGTGGCGCGGTTGTCATCGCA
GACCAAATAA

Synonyms

Publications