jgi.p|Nanoce1779_2|576258, mRNA_113 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576258
Unique NamemRNA_113
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1352
Alignment locationscaffold_3:303294..304645 -

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Properties
Property NameValue
TranscriptId576344
TrackFilteredModels2
ProteinId576258
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:303294..304645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576258gene_113Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576258mRNA_113-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_113CDS_113Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_113 ID=mRNA_113|Name=jgi.p|Nanoce1779_2|576258|organism=Nannochloropsis oceanica|type=mRNA|length=1352bp
AACAGAAGCCAAGTTCTGGCAAGGTTGACCAGCTTCTGACAAGGCAGGGT
GTCCCAAATACTTTTTTACTTTTTGTGCAAGCACGTCCAAACCCGTGAAA
AGCTAGCAGCAGCAGCAGCGCAGCAACAAGCCGCATACGCGTGACTATGA
CGGCCACCCGCGCAGCCACCACCACAAACGTCACGACGCGAGCATTTCTA
CGTGTTTTCATACAAGCCCTCCTGCTCCTCCTTCTGGTCGTGCCCACGGA
CGCCTTTTTCAGCCCCGTCTCGCCTAGCAGCAGCAGCAGTAGCAGAGGAT
CCACGCTCACTACCACCGCCGCACGCATAACCACCGCGGTGTTCTCTGGG
GTCTTTGAACCCACGACCATTGGGCCAAATACCCGAACCATCGGCACGAA
AGATAGCAGGAGCAGCTATAGCAGCGGTCGCAGCACCAGCACCGGCCGCA
ACCCCTTATTCTCAACCACTGCATTAGCCTCCTCAGCCCGCTCCACGACT
GGATTTGGGGATGCCCGAGGGCGCGGTGTGCGGGATGGTCAGGGTCGCAT
TGAGCTTCTGTGTAAGGCCGGACCGGAGGGGGAAGCCTTGGGAGATTGCC
CTTTCTGCCATTACGTGCAAATGGTGCTTCGATATAAGGGCCTACGGTAT
CGCCTCGTGCCCCTGGCACCGGAGGACAAGCCTGAGTGGCTCATGGAAGG
GTACGGGGGTAAAATGCCTTGTTTGGTTCACGACGAGGAGGCTTACACGG
ACTCGGCTACCATTACGCAGTATCTGGAGTATTTCTTCCCCGGCGAGGTT
CCTCTGACATTGGAAGAAGAGGACCCGGAACTAGAGGAGGAGGTGAAGGC
CGCGACCTCGGGTGTGTTTGGCGCTTTTGCCCGCTACGTGAAAAACCACG
ACAAGGCACAAGATCCCCCCCTTCAAGCAGCCCTATTCGAAGAGCTAGGT
AAGGCGGACGCATTGCTGCAGAAGACGGGCGGGCCCTTCTTGGCTGGGGA
CAGGATCACCCTCGATGACATGGCTTTGGCTCCCAAGCTTTATCACGTGA
AAGTCGGCGTGGCTCATTTCAAAAATGTGATTATTCCCCCGGATTTGGAC
GCGTTAGCAGCGTATATGCGGAATATGTTTGATATGGAGATTTTCCAAGA
GAGTAGTTACCCTCCTGATATAATCACCTGGGGTTGGGGCAATGCCCGGG
GTCAGTAGATTCTAAGGAGGGAGAAAGGGAGGGAAGAAGGTAGGTAGGTA
GGTGAGTAGATAGATAGAGATGGGGACAAATAATTTGGGGGAACGTGTAC
GAAGGAAAGGAAAAAAAGTGCGATCATTTTGGGAGGAACAGATGGAGCAG
GG
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protein sequence of jgi.p|Nanoce1779_2|576258

>mRNA_113-protein ID=mRNA_113-protein|Name=jgi.p|Nanoce1779_2|576258|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MTATRAATTTNVTTRAFLRVFIQALLLLLLVVPTDAFFSPVSPSSSSSSR
GSTLTTTAARITTAVFSGVFEPTTIGPNTRTIGTKDSRSSYSSGRSTSTG
RNPLFSTTALASSARSTTGFGDARGRGVRDGQGRIELLCKAGPEGEALGD
CPFCHYVQMVLRYKGLRYRLVPLAPEDKPEWLMEGYGGKMPCLVHDEEAY
TDSATITQYLEYFFPGEVPLTLEEEDPELEEEVKAATSGVFGAFARYVKN
HDKAQDPPLQAALFEELGKADALLQKTGGPFLAGDRITLDDMALAPKLYH
VKVGVAHFKNVIIPPDLDALAAYMRNMFDMEIFQESSYPPDIITWGWGNA
RGQ*
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mRNA from alignment at scaffold_3:303294..304645-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_113 ID=mRNA_113|Name=jgi.p|Nanoce1779_2|576258|organism=Nannochloropsis oceanica|type=mRNA|length=1352bp|location=Sequence derived from alignment at scaffold_3:303294..304645- (Nannochloropsis oceanica)
AACAGAAGCCAAGTTCTGGCAAGGTTGACCAGCTTCTGACAAGGCAGGGT
GTCCCAAATACTTTTTTACTTTTTGTGCAAGCACGTCCAAACCCGTGAAA
AGCTAGCAGCAGCAGCAGCGCAGCAACAAGCCGCATACGCGTGACTATGA
CGGCCACCCGCGCAGCCACCACCACAAACGTCACGACGCGAGCATTTCTA
CGTGTTTTCATACAAGCCCTCCTGCTCCTCCTTCTGGTCGTGCCCACGGA
CGCCTTTTTCAGCCCCGTCTCGCCTAGCAGCAGCAGCAGTAGCAGAGGAT
CCACGCTCACTACCACCGCCGCACGCATAACCACCGCGGTGTTCTCTGGG
GTCTTTGAACCCACGACCATTGGGCCAAATACCCGAACCATCGGCACGAA
AGATAGCAGGAGCAGCTATAGCAGCGGTCGCAGCACCAGCACCGGCCGCA
ACCCCTTATTCTCAACCACTGCATTAGCCTCCTCAGCCCGCTCCACGACT
GGATTTGGGGATGCCCGAGGGCGCGGTGTGCGGGATGGTCAGGGTCGCAT
TGAGCTTCTGTGTAAGGCCGGACCGGAGGGGGAAGCCTTGGGAGATTGCC
CTTTCTGCCATTACGTGCAAATGGTGCTTCGATATAAGGGCCTACGGTAT
CGCCTCGTGCCCCTGGCACCGGAGGACAAGCCTGAGTGGCTCATGGAAGG
GTACGGGGGTAAAATGCCTTGTTTGGTTCACGACGAGGAGGCTTACACGG
ACTCGGCTACCATTACGCAGTATCTGGAGTATTTCTTCCCCGGCGAGGTT
CCTCTGACATTGGAAGAAGAGGACCCGGAACTAGAGGAGGAGGTGAAGGC
CGCGACCTCGGGTGTGTTTGGCGCTTTTGCCCGCTACGTGAAAAACCACG
ACAAGGCACAAGATCCCCCCCTTCAAGCAGCCCTATTCGAAGAGCTAGGT
AAGGCGGACGCATTGCTGCAGAAGACGGGCGGGCCCTTCTTGGCTGGGGA
CAGGATCACCCTCGATGACATGGCTTTGGCTCCCAAGCTTTATCACGTGA
AAGTCGGCGTGGCTCATTTCAAAAATGTGATTATTCCCCCGGATTTGGAC
GCGTTAGCAGCGTATATGCGGAATATGTTTGATATGGAGATTTTCCAAGA
GAGTAGTTACCCTCCTGATATAATCACCTGGGGTTGGGGCAATGCCCGGG
GTCAGTAGATTCTAAGGAGGGAGAAAGGGAGGGAAGAAGGTAGGTAGGTA
GGTGAGTAGATAGATAGAGATGGGGACAAATAATTTGGGGGAACGTGTAC
GAAGGAAAGGAAAAAAAGTGCGATCATTTTGGGAGGAACAGATGGAGCAG
GG
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Coding sequence (CDS) from alignment at scaffold_3:303294..304645-

>mRNA_113 ID=mRNA_113|Name=jgi.p|Nanoce1779_2|576258|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_3:303294..304645- (Nannochloropsis oceanica)
ATGACGGCCACCCGCGCAGCCACCACCACAAACGTCACGACGCGAGCATT
TCTACGTGTTTTCATACAAGCCCTCCTGCTCCTCCTTCTGGTCGTGCCCA
CGGACGCCTTTTTCAGCCCCGTCTCGCCTAGCAGCAGCAGCAGTAGCAGA
GGATCCACGCTCACTACCACCGCCGCACGCATAACCACCGCGGTGTTCTC
TGGGGTCTTTGAACCCACGACCATTGGGCCAAATACCCGAACCATCGGCA
CGAAAGATAGCAGGAGCAGCTATAGCAGCGGTCGCAGCACCAGCACCGGC
CGCAACCCCTTATTCTCAACCACTGCATTAGCCTCCTCAGCCCGCTCCAC
GACTGGATTTGGGGATGCCCGAGGGCGCGGTGTGCGGGATGGTCAGGGTC
GCATTGAGCTTCTGTGTAAGGCCGGACCGGAGGGGGAAGCCTTGGGAGAT
TGCCCTTTCTGCCATTACGTGCAAATGGTGCTTCGATATAAGGGCCTACG
GTATCGCCTCGTGCCCCTGGCACCGGAGGACAAGCCTGAGTGGCTCATGG
AAGGGTACGGGGGTAAAATGCCTTGTTTGGTTCACGACGAGGAGGCTTAC
ACGGACTCGGCTACCATTACGCAGTATCTGGAGTATTTCTTCCCCGGCGA
GGTTCCTCTGACATTGGAAGAAGAGGACCCGGAACTAGAGGAGGAGGTGA
AGGCCGCGACCTCGGGTGTGTTTGGCGCTTTTGCCCGCTACGTGAAAAAC
CACGACAAGGCACAAGATCCCCCCCTTCAAGCAGCCCTATTCGAAGAGCT
AGGTAAGGCGGACGCATTGCTGCAGAAGACGGGCGGGCCCTTCTTGGCTG
GGGACAGGATCACCCTCGATGACATGGCTTTGGCTCCCAAGCTTTATCAC
GTGAAAGTCGGCGTGGCTCATTTCAAAAATGTGATTATTCCCCCGGATTT
GGACGCGTTAGCAGCGTATATGCGGAATATGTTTGATATGGAGATTTTCC
AAGAGAGTAGTTACCCTCCTGATATAATCACCTGGGGTTGGGGCAATGCC
CGGGGTCAGTAG
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Synonyms
Publications