jgi.p|Nanoce1779_2|151818, mRNA_1129 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|151818
Unique Name	mRNA_1129
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2880
Alignment location	scaffold_2:1298874..1301753 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	151904
Track	FilteredModels2
ProteinId	151818

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1298874..1301753 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|151818	gene_1129	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|151818	mRNA_1129-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1129	CDS_1129	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1298874..1301753-
coding sequence from alignment at scaffold_2:1298874..1301753-

mRNA sequence

>mRNA_1129 ID=mRNA_1129|Name=jgi.p|Nanoce1779_2|151818|organism=Nannochloropsis oceanica|type=mRNA|length=2880bp
CTTCAAATTATTTTCCCCCCCTCCATGCCCACCCTTTCACCATAGAAAGA
AATTTTGAAGGAAATCCGTCTCCTCAAAACCATGCAACATACCAACATCG
TCCGCTTCCATGACGCCGTCATCCAGCCCGGGGGCTCTTCCTCTTCCTCC
TGCTCCTCCCAATTAGAGGCGCTCATCTTAATGGAGCACTGCACGGGCGG
TTCTCTCTTTGAGACAATCAAACGGAGGGGACAACGTCGATTTAGTAACC
CCGAGATATTACAAATAGCCTGGGATGTAAGTAGCGCCGTTGCCGTCATG
CATCACCAGCAACCTCTTGCTATCGCTCATCGCGATTTGAAGCTCGAGAA
CATCCTACTCTCCTTCCCTTCCTCCAACGGCAGCAGTTTCAGTCACTACA
GCAGCGATGTAGGCGATCAAGGAGGGAAAGGCGTAGTGTACAAACTCATC
GACTTTGGCTCTGCAGTGGAAGGGCCAGTGCCACTAAGGAATGCTCAGGA
GCGCGCGTGCGAAGAAGAGAGGATCGAGAAGACAACAACGCAGATGTACC
GGGCACCAGAGATGGTTGACTTATACTTAAGGAGAGAGCTAGACCATTCA
GTGGACGTGTGGGCGCTCGGTTGTGTGTTTTTCACAGTTTTGCACTTTGT
TCACCCGTTTCAAGATGCTGGCAAGCTGGGGATATTGAATAATAAACGTC
GCAAGGTCGAGGGAGGGGGGGATGGCGAGGGGGACGTACAGGAGTTGATT
GATCGGATGTTGCTGCCGGATGCGATGGCGCGGTTGAATATAGATGAGGT
AATGGAGCATGTGAGATGCCTTAGAGAAGGGAGGGGGCTACCCCCCCGCA
CACGGTTCACAAGGGAAGAAGAATTGCAGCAACGTCGAGCGGCCGGACAA
ATGGCAGGCGCGGTAGGACGGAGTAGGTCTCCATCAGGACTATCGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAGCAGTCAGAGCTT
TGAATCCTAATTCGGCGGCGGCTCGTCGGTTGGCCGGCAGGTCTCGAGGA
ATGTCCGCTACCGTTTCAGCAGCCGTCTCTGCCACGTTTACGGAAGGGGT
TGCTTCGGGAGTGGGTGCGACTCCAGCGGCGACGACGACGGTGGCAGATT
TGGGTTCGACTGGAGAAGCAGGATTAAGAGGAGGAGGAGGAGGAGAAGAA
GGAAGAGGAGGAGGAGGAGGGGGAGAAGAAACGGCTGCTGATGCCCTCTT
TGTGGATAATACCGAGGAGGGAGTAGGGAGTGAAGAGGAGGAAGAGGCGG
TTGGTAGCTTTGTGTGTCTGCCCCCTACGGAGCAATTTCAGGCCATGGAC
CCCTTTCCCGATACACCGATGGCTGGTCGAGCAGCAGCGACAGGAGAGGC
TGCAGCGACATCAGGGACTAGTATGAGGAGTAGTGATGGGTTCCTCTCGC
CTGCCTCACTGCTTGATTTTCCGTCTTCCTCCTCCTCCATAATTTCACCG
CAACCAGGCGTGCGCAAGCCCTCTTTTGATGACGAGAATTTCGGTGCTGT
TTCGACAATTACAGCAGCCACCACCGCCAGCAGCAGCAGCAGCAGCAGCA
GTGGGAGGAACAGCAGCAACAAGAGGAGGGGCCCAAGGGAAGAAAACCAG
GCAGAATGGAACACACCCTCTGGCACGTTCGATCCTATTTTCGACACCCA
CCCCAATACCAGCACCTCCACGACTGCCCACCACACCACGCCCTCAGCTA
CCTTCCATTCTCTCCCTACTGATTCCGCTGTCAACGTTTTGGGCCCCGAG
GAGACAACAATCGACTTCCTTGCCCTGTCCGGCAGCCCTGGGACCACCAG
TGGCATGGGTGGATTAGGTTTCTCTCAACAGCGACCGCCCACTTTCCCTA
CCGCCATCGACAGCAGCAGCAGCAGCAGCAGCAACAGCGGCAGCAGGGAC
AGAAACAACAATACCGGTCGCATCTACAAGAATGGCCTTCCTGCGTCGGC
ATCACTTGTTCCTCCCTCGAAACCACCCAAGCCGGCTCGTCCACCAGCGA
TGAAGCCTCCTCCTCCCTCTTTCCAAGAACAGATGGCAGACCCCTTATCC
TCCCTTGTCCACCCCGCATCTCCGTCGTTTCCACAAATAATGCAGTCACA
GTATCAGCAACAACAGCAACAACAGCAACAGCAGCAACAGCAGCATCAGT
ACCATCAATCACCGCCACGGTCGCTGTACCCAGCGGTCAACCCGTATTGT
AGCGGTGGTGGGTGGAAACCGCCACAGCAACAACAGCAGCAACAGCAACT
CAACCCTTATAACATCAATAACAGCGCATTCAATTTCGGTAGCGCAGGCG
GAGGGGGAGGGACAGGAGGAGGAGTATTCGCGGCTCCTCTTCCACCGCAT
CATCCGCAATACTACCATCACCAACAGCAGCAACAACAGCAGCAGCAGCA
GTCGCTGACTTCCCGTTCAGGAGGAGGCACTGTGGACGGAAGTATCACAG
AGAATCACCACAGAAGCAGCAGCAGCAGCAGCTACCAAGGCCACCCGGGA
TTTGCCTCAGGTGTGATCAGCCAATCTTCTCTAGGGTTTTACCAAGCGGA
CGCATTTGGGTGCGGCTCGAGCCCAACCCACGAGGGAGGTCAAGGAAGCC
CGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGGTTGGGACTCG
TTTGATTTTTGACGAGAGGGGGAGGAAGAGAGGAAGAGAGGAGAGAGATG
TGCATGTGGTTATTACCTAGGCGCTGGAAAAAGTACCAGGATGATGATGT
AAATATCATCGCATTTTGAAATGCATCAAATAATTCATCAATCGCTACGA
AGGAAATAAGAAAGGAAAAAAACTTCTAAC

protein sequence of jgi.p|Nanoce1779_2|151818

>mRNA_1129-protein ID=mRNA_1129-protein|Name=jgi.p|Nanoce1779_2|151818|organism=Nannochloropsis oceanica|type=polypeptide|length=877bp
MQHTNIVRFHDAVIQPGGSSSSSCSSQLEALILMEHCTGGSLFETIKRRG
QRRFSNPEILQIAWDVSSAVAVMHHQQPLAIAHRDLKLENILLSFPSSNG
SSFSHYSSDVGDQGGKGVVYKLIDFGSAVEGPVPLRNAQERACEEERIEK
TTTQMYRAPEMVDLYLRRELDHSVDVWALGCVFFTVLHFVHPFQDAGKLG
ILNNKRRKVEGGGDGEGDVQELIDRMLLPDAMARLNIDEVMEHVRCLREG
RGLPPRTRFTREEELQQRRAAGQMAGAVGRSRSPSGLSQQQQQQQQQQQQ
QPAVRALNPNSAAARRLAGRSRGMSATVSAAVSATFTEGVASGVGATPAA
TTTVADLGSTGEAGLRGGGGGEEGRGGGGGGEETAADALFVDNTEEGVGS
EEEEEAVGSFVCLPPTEQFQAMDPFPDTPMAGRAAATGEAAATSGTSMRS
SDGFLSPASLLDFPSSSSSIISPQPGVRKPSFDDENFGAVSTITAATTAS
SSSSSSSGRNSSNKRRGPREENQAEWNTPSGTFDPIFDTHPNTSTSTTAH
HTTPSATFHSLPTDSAVNVLGPEETTIDFLALSGSPGTTSGMGGLGFSQQ
RPPTFPTAIDSSSSSSSNSGSRDRNNNTGRIYKNGLPASASLVPPSKPPK
PARPPAMKPPPPSFQEQMADPLSSLVHPASPSFPQIMQSQYQQQQQQQQQ
QQQQHQYHQSPPRSLYPAVNPYCSGGGWKPPQQQQQQQQLNPYNINNSAF
NFGSAGGGGGTGGGVFAAPLPPHHPQYYHHQQQQQQQQQQSLTSRSGGGT
VDGSITENHHRSSSSSSYQGHPGFASGVISQSSLGFYQADAFGCGSSPTH
EGGQGSPKQQQQQQQQQQHGWDSFDF*

mRNA from alignment at scaffold_2:1298874..1301753-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1129 ID=mRNA_1129|Name=jgi.p|Nanoce1779_2|151818|organism=Nannochloropsis oceanica|type=mRNA|length=2880bp|location=Sequence derived from alignment at scaffold_2:1298874..1301753- (Nannochloropsis oceanica)
CTTCAAATTATTTTCCCCCCCTCCATGCCCACCCTTTCACCATAGAAAGA
AATTTTGAAGGAAATCCGTCTCCTCAAAACCATGCAACATACCAACATCG
TCCGCTTCCATGACGCCGTCATCCAGCCCGGGGGCTCTTCCTCTTCCTCC
TGCTCCTCCCAATTAGAGGCGCTCATCTTAATGGAGCACTGCACGGGCGG
TTCTCTCTTTGAGACAATCAAACGGAGGGGACAACGTCGATTTAGTAACC
CCGAGATATTACAAATAGCCTGGGATGTAAGTAGCGCCGTTGCCGTCATG
CATCACCAGCAACCTCTTGCTATCGCTCATCGCGATTTGAAGCTCGAGAA
CATCCTACTCTCCTTCCCTTCCTCCAACGGCAGCAGTTTCAGTCACTACA
GCAGCGATGTAGGCGATCAAGGAGGGAAAGGCGTAGTGTACAAACTCATC
GACTTTGGCTCTGCAGTGGAAGGGCCAGTGCCACTAAGGAATGCTCAGGA
GCGCGCGTGCGAAGAAGAGAGGATCGAGAAGACAACAACGCAGATGTACC
GGGCACCAGAGATGGTTGACTTATACTTAAGGAGAGAGCTAGACCATTCA
GTGGACGTGTGGGCGCTCGGTTGTGTGTTTTTCACAGTTTTGCACTTTGT
TCACCCGTTTCAAGATGCTGGCAAGCTGGGGATATTGAATAATAAACGTC
GCAAGGTCGAGGGAGGGGGGGATGGCGAGGGGGACGTACAGGAGTTGATT
GATCGGATGTTGCTGCCGGATGCGATGGCGCGGTTGAATATAGATGAGGT
AATGGAGCATGTGAGATGCCTTAGAGAAGGGAGGGGGCTACCCCCCCGCA
CACGGTTCACAAGGGAAGAAGAATTGCAGCAACGTCGAGCGGCCGGACAA
ATGGCAGGCGCGGTAGGACGGAGTAGGTCTCCATCAGGACTATCGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAGCAGTCAGAGCTT
TGAATCCTAATTCGGCGGCGGCTCGTCGGTTGGCCGGCAGGTCTCGAGGA
ATGTCCGCTACCGTTTCAGCAGCCGTCTCTGCCACGTTTACGGAAGGGGT
TGCTTCGGGAGTGGGTGCGACTCCAGCGGCGACGACGACGGTGGCAGATT
TGGGTTCGACTGGAGAAGCAGGATTAAGAGGAGGAGGAGGAGGAGAAGAA
GGAAGAGGAGGAGGAGGAGGGGGAGAAGAAACGGCTGCTGATGCCCTCTT
TGTGGATAATACCGAGGAGGGAGTAGGGAGTGAAGAGGAGGAAGAGGCGG
TTGGTAGCTTTGTGTGTCTGCCCCCTACGGAGCAATTTCAGGCCATGGAC
CCCTTTCCCGATACACCGATGGCTGGTCGAGCAGCAGCGACAGGAGAGGC
TGCAGCGACATCAGGGACTAGTATGAGGAGTAGTGATGGGTTCCTCTCGC
CTGCCTCACTGCTTGATTTTCCGTCTTCCTCCTCCTCCATAATTTCACCG
CAACCAGGCGTGCGCAAGCCCTCTTTTGATGACGAGAATTTCGGTGCTGT
TTCGACAATTACAGCAGCCACCACCGCCAGCAGCAGCAGCAGCAGCAGCA
GTGGGAGGAACAGCAGCAACAAGAGGAGGGGCCCAAGGGAAGAAAACCAG
GCAGAATGGAACACACCCTCTGGCACGTTCGATCCTATTTTCGACACCCA
CCCCAATACCAGCACCTCCACGACTGCCCACCACACCACGCCCTCAGCTA
CCTTCCATTCTCTCCCTACTGATTCCGCTGTCAACGTTTTGGGCCCCGAG
GAGACAACAATCGACTTCCTTGCCCTGTCCGGCAGCCCTGGGACCACCAG
TGGCATGGGTGGATTAGGTTTCTCTCAACAGCGACCGCCCACTTTCCCTA
CCGCCATCGACAGCAGCAGCAGCAGCAGCAGCAACAGCGGCAGCAGGGAC
AGAAACAACAATACCGGTCGCATCTACAAGAATGGCCTTCCTGCGTCGGC
ATCACTTGTTCCTCCCTCGAAACCACCCAAGCCGGCTCGTCCACCAGCGA
TGAAGCCTCCTCCTCCCTCTTTCCAAGAACAGATGGCAGACCCCTTATCC
TCCCTTGTCCACCCCGCATCTCCGTCGTTTCCACAAATAATGCAGTCACA
GTATCAGCAACAACAGCAACAACAGCAACAGCAGCAACAGCAGCATCAGT
ACCATCAATCACCGCCACGGTCGCTGTACCCAGCGGTCAACCCGTATTGT
AGCGGTGGTGGGTGGAAACCGCCACAGCAACAACAGCAGCAACAGCAACT
CAACCCTTATAACATCAATAACAGCGCATTCAATTTCGGTAGCGCAGGCG
GAGGGGGAGGGACAGGAGGAGGAGTATTCGCGGCTCCTCTTCCACCGCAT
CATCCGCAATACTACCATCACCAACAGCAGCAACAACAGCAGCAGCAGCA
GTCGCTGACTTCCCGTTCAGGAGGAGGCACTGTGGACGGAAGTATCACAG
AGAATCACCACAGAAGCAGCAGCAGCAGCAGCTACCAAGGCCACCCGGGA
TTTGCCTCAGGTGTGATCAGCCAATCTTCTCTAGGGTTTTACCAAGCGGA
CGCATTTGGGTGCGGCTCGAGCCCAACCCACGAGGGAGGTCAAGGAAGCC
CGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGGTTGGGACTCG
TTTGATTTTTGACGAGAGGGGGAGGAAGAGAGGAAGAGAGGAGAGAGATG
TGCATGTGGTTATTACCTAGGCGCTGGAAAAAGTACCAGGATGATGATGT
AAATATCATCGCATTTTGAAATGCATCAAATAATTCATCAATCGCTACGA
AGGAAATAAGAAAGGAAAAAAACTTCTAAC

Coding sequence (CDS) from alignment at scaffold_2:1298874..1301753-

>mRNA_1129 ID=mRNA_1129|Name=jgi.p|Nanoce1779_2|151818|organism=Nannochloropsis oceanica|type=CDS|length=2631bp|location=Sequence derived from alignment at scaffold_2:1298874..1301753- (Nannochloropsis oceanica)
ATGCAACATACCAACATCGTCCGCTTCCATGACGCCGTCATCCAGCCCGG
GGGCTCTTCCTCTTCCTCCTGCTCCTCCCAATTAGAGGCGCTCATCTTAA
TGGAGCACTGCACGGGCGGTTCTCTCTTTGAGACAATCAAACGGAGGGGA
CAACGTCGATTTAGTAACCCCGAGATATTACAAATAGCCTGGGATGTAAG
TAGCGCCGTTGCCGTCATGCATCACCAGCAACCTCTTGCTATCGCTCATC
GCGATTTGAAGCTCGAGAACATCCTACTCTCCTTCCCTTCCTCCAACGGC
AGCAGTTTCAGTCACTACAGCAGCGATGTAGGCGATCAAGGAGGGAAAGG
CGTAGTGTACAAACTCATCGACTTTGGCTCTGCAGTGGAAGGGCCAGTGC
CACTAAGGAATGCTCAGGAGCGCGCGTGCGAAGAAGAGAGGATCGAGAAG
ACAACAACGCAGATGTACCGGGCACCAGAGATGGTTGACTTATACTTAAG
GAGAGAGCTAGACCATTCAGTGGACGTGTGGGCGCTCGGTTGTGTGTTTT
TCACAGTTTTGCACTTTGTTCACCCGTTTCAAGATGCTGGCAAGCTGGGG
ATATTGAATAATAAACGTCGCAAGGTCGAGGGAGGGGGGGATGGCGAGGG
GGACGTACAGGAGTTGATTGATCGGATGTTGCTGCCGGATGCGATGGCGC
GGTTGAATATAGATGAGGTAATGGAGCATGTGAGATGCCTTAGAGAAGGG
AGGGGGCTACCCCCCCGCACACGGTTCACAAGGGAAGAAGAATTGCAGCA
ACGTCGAGCGGCCGGACAAATGGCAGGCGCGGTAGGACGGAGTAGGTCTC
CATCAGGACTATCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCCAGCAGTCAGAGCTTTGAATCCTAATTCGGCGGCGGCTCGTCGGTT
GGCCGGCAGGTCTCGAGGAATGTCCGCTACCGTTTCAGCAGCCGTCTCTG
CCACGTTTACGGAAGGGGTTGCTTCGGGAGTGGGTGCGACTCCAGCGGCG
ACGACGACGGTGGCAGATTTGGGTTCGACTGGAGAAGCAGGATTAAGAGG
AGGAGGAGGAGGAGAAGAAGGAAGAGGAGGAGGAGGAGGGGGAGAAGAAA
CGGCTGCTGATGCCCTCTTTGTGGATAATACCGAGGAGGGAGTAGGGAGT
GAAGAGGAGGAAGAGGCGGTTGGTAGCTTTGTGTGTCTGCCCCCTACGGA
GCAATTTCAGGCCATGGACCCCTTTCCCGATACACCGATGGCTGGTCGAG
CAGCAGCGACAGGAGAGGCTGCAGCGACATCAGGGACTAGTATGAGGAGT
AGTGATGGGTTCCTCTCGCCTGCCTCACTGCTTGATTTTCCGTCTTCCTC
CTCCTCCATAATTTCACCGCAACCAGGCGTGCGCAAGCCCTCTTTTGATG
ACGAGAATTTCGGTGCTGTTTCGACAATTACAGCAGCCACCACCGCCAGC
AGCAGCAGCAGCAGCAGCAGTGGGAGGAACAGCAGCAACAAGAGGAGGGG
CCCAAGGGAAGAAAACCAGGCAGAATGGAACACACCCTCTGGCACGTTCG
ATCCTATTTTCGACACCCACCCCAATACCAGCACCTCCACGACTGCCCAC
CACACCACGCCCTCAGCTACCTTCCATTCTCTCCCTACTGATTCCGCTGT
CAACGTTTTGGGCCCCGAGGAGACAACAATCGACTTCCTTGCCCTGTCCG
GCAGCCCTGGGACCACCAGTGGCATGGGTGGATTAGGTTTCTCTCAACAG
CGACCGCCCACTTTCCCTACCGCCATCGACAGCAGCAGCAGCAGCAGCAG
CAACAGCGGCAGCAGGGACAGAAACAACAATACCGGTCGCATCTACAAGA
ATGGCCTTCCTGCGTCGGCATCACTTGTTCCTCCCTCGAAACCACCCAAG
CCGGCTCGTCCACCAGCGATGAAGCCTCCTCCTCCCTCTTTCCAAGAACA
GATGGCAGACCCCTTATCCTCCCTTGTCCACCCCGCATCTCCGTCGTTTC
CACAAATAATGCAGTCACAGTATCAGCAACAACAGCAACAACAGCAACAG
CAGCAACAGCAGCATCAGTACCATCAATCACCGCCACGGTCGCTGTACCC
AGCGGTCAACCCGTATTGTAGCGGTGGTGGGTGGAAACCGCCACAGCAAC
AACAGCAGCAACAGCAACTCAACCCTTATAACATCAATAACAGCGCATTC
AATTTCGGTAGCGCAGGCGGAGGGGGAGGGACAGGAGGAGGAGTATTCGC
GGCTCCTCTTCCACCGCATCATCCGCAATACTACCATCACCAACAGCAGC
AACAACAGCAGCAGCAGCAGTCGCTGACTTCCCGTTCAGGAGGAGGCACT
GTGGACGGAAGTATCACAGAGAATCACCACAGAAGCAGCAGCAGCAGCAG
CTACCAAGGCCACCCGGGATTTGCCTCAGGTGTGATCAGCCAATCTTCTC
TAGGGTTTTACCAAGCGGACGCATTTGGGTGCGGCTCGAGCCCAACCCAC
GAGGGAGGTCAAGGAAGCCCGAAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCATGGTTGGGACTCGTTTGATTTTTGA

Synonyms

Publications