jgi.p|Nanoce1779_2|575433, mRNA_1128 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575433
Unique NamemRNA_1128
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1225
Alignment locationscaffold_2:1297331..1298734 +

Link to JBrowse

Properties
Property NameValue
TranscriptId575519
TrackFilteredModels2
ProteinId575433
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1297331..1298734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575433gene_1128Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575433mRNA_1128-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1128CDS_1128Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1128 ID=mRNA_1128|Name=jgi.p|Nanoce1779_2|575433|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp
ACGGCTAGGGCAATTGCTTCCTCTTTCAAACTCAACCTCATCCAACACAA
AACAACGAAATTGGAGGACGTCATCGACGCCCGCTGGCCCTGGGGATTAT
GATTTCCGCCGTCGCCTCTGAAGCAGCAGGAACGACAGGCACACGGGCAT
CAGAAAGTAACCTCCTACTGCATAATTGTGTGAGGGTCTTGCTCGACGCA
GGGGAGCGGCTGCGCTTACCACAGGAGACCATCGCTACGGCCGTCATAAT
CTTTCACCGGTTTTTCGCCAAGCGGAGCCTGTCTGATCACCTTGCTAAAC
AACGCATGGACGTGGTGCTCATGACCTGCCTCTTCCTTGCTGCCAAGGTG
GAGGAGCAGCCACGCCGTATTCGGGATGCAATCAATTGTGTCTATTTTGC
GCAGAGGCGAATGCAGATTCTTCGTACTGCCTTTACTGCAGATGTTGCTG
GTGGTAACAAAGGTGACAAAGGGGGGGAAAGAGAAGTAGGGAAGAATAGT
GGAGACTTCCGACAGCAGGACGAAAGAAGACATGGAGTGGCAACAGCACC
GCAACGGGAAGCAGATGCTATTTTGCCGTTAGACCGCGGGTACTGGGAAA
TGAAAGAAAGCGTTGTCGACATGGAGCAGCTTGTCTTGCGTGTCCTGGGC
TTCGACCTTGATACCTATCGACCATACCGCATCCTCCTCAACTATGCCCG
TTCGTTACGTGCACGTCCTGTAACGGTCGAAGTGGCCTGGGCGCTCTTAA
ACGATTCCTTGTTCTCGCCTGCCTTTTGCTTGACGAGGCCATCGCAAGCC
CAGGCTGTGGCTGTGCTGCATTTGGCACAGCGGTTTCTAATGGTGCAAGA
GCAGGAAGAGGAGGAAGAAGAGAAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAAGATTCGGGTACAACAGCGGGGAGTACCAGCAGC
AGCAACAGCTTCAAGCCCAGAAAACACAATTTTGTCATTAAGAGCAGCAT
ACGCTTCAGAAATACGAGCGGTGAAATGCCGGTCAATCGGGGCATGTGGA
CAGTGCTGGGAGCAAAGGCTGAAGATGTCGAAGCTTGTAGTAACGATCTC
CTGGCGTTGTATGAGGAGGGGATCGAGCCTTCTTTTGAGAGGGGATGAAT
GGGTATGGAGGGTGAAGAAAGATATGAGGAGGAGGGAGGAAATAGCGTGG
TGGTATGGGGGGGGGTCACTGGAGG
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protein sequence of jgi.p|Nanoce1779_2|575433

>mRNA_1128-protein ID=mRNA_1128-protein|Name=jgi.p|Nanoce1779_2|575433|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MISAVASEAAGTTGTRASESNLLLHNCVRVLLDAGERLRLPQETIATAVI
IFHRFFAKRSLSDHLAKQRMDVVLMTCLFLAAKVEEQPRRIRDAINCVYF
AQRRMQILRTAFTADVAGGNKGDKGGEREVGKNSGDFRQQDERRHGVATA
PQREADAILPLDRGYWEMKESVVDMEQLVLRVLGFDLDTYRPYRILLNYA
RSLRARPVTVEVAWALLNDSLFSPAFCLTRPSQAQAVAVLHLAQRFLMVQ
EQEEEEEEKQQQQQQQQQQQQQQDSGTTAGSTSSSNSFKPRKHNFVIKSS
IRFRNTSGEMPVNRGMWTVLGAKAEDVEACSNDLLALYEEGIEPSFERG*
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mRNA from alignment at scaffold_2:1297331..1298734+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1128 ID=mRNA_1128|Name=jgi.p|Nanoce1779_2|575433|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp|location=Sequence derived from alignment at scaffold_2:1297331..1298734+ (Nannochloropsis oceanica)
ACGGCTAGGGCAATTGCTTCCTCTTTCAAACTCAACCTCATCCAACACAA
AACAACGAAATTGGAGGACGTCATCGACGCCCGCTGGCCCTGGGGATTAT
GATTTCCGCCGTCGCCTCTGAAGCAGCAGGAACGACAGGCACACGGGCAT
CAGAAAGTAACCTCCTACTGCATAATTGTGTGAGGGTCTTGCTCGACGCA
GGGGAGCGGCTGCGCTTACCACAGGTGCGTGCACACATTTTATTGAGTAT
TAATCTAGCGCATCCTATTGCCTGAATCTGCCCTTCAGATACCTCGATGG
TGTCTGTCTTTCCTATGCTCCTCCTTCCCCTGCCCAATCCTTTCCATCTC
CCCACCCCGACTCCCAATGCCTCACTCCACCATCATCCGTCTCCTTCCCA
CAGGAGACCATCGCTACGGCCGTCATAATCTTTCACCGGTTTTTCGCCAA
GCGGAGCCTGTCTGATCACCTTGCTAAACAACGCATGGACGTGGTGCTCA
TGACCTGCCTCTTCCTTGCTGCCAAGGTGGAGGAGCAGCCACGCCGTATT
CGGGATGCAATCAATTGTGTCTATTTTGCGCAGAGGCGAATGCAGATTCT
TCGTACTGCCTTTACTGCAGATGTTGCTGGTGGTAACAAAGGTGACAAAG
GGGGGGAAAGAGAAGTAGGGAAGAATAGTGGAGACTTCCGACAGCAGGAC
GAAAGAAGACATGGAGTGGCAACAGCACCGCAACGGGAAGCAGATGCTAT
TTTGCCGTTAGACCGCGGGTACTGGGAAATGAAAGAAAGCGTTGTCGACA
TGGAGCAGCTTGTCTTGCGTGTCCTGGGCTTCGACCTTGATACCTATCGA
CCATACCGCATCCTCCTCAACTATGCCCGTTCGTTACGTGCACGTCCTGT
AACGGTCGAAGTGGCCTGGGCGCTCTTAAACGATTCCTTGTTCTCGCCTG
CCTTTTGCTTGACGAGGCCATCGCAAGCCCAGGCTGTGGCTGTGCTGCAT
TTGGCACAGCGGTTTCTAATGGTGCAAGAGCAGGAAGAGGAGGAAGAAGA
GAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGATT
CGGGTACAACAGCGGGGAGTACCAGCAGCAGCAACAGCTTCAAGCCCAGA
AAACACAATTTTGTCATTAAGAGCAGCATACGCTTCAGAAATACGAGCGG
TGAAATGCCGGTCAATCGGGGCATGTGGACAGTGCTGGGAGCAAAGGCTG
AAGATGTCGAAGCTTGTAGTAACGATCTCCTGGCGTTGTATGAGGAGGGG
ATCGAGCCTTCTTTTGAGAGGGGATGAATGGGTATGGAGGGTGAAGAAAG
ATATGAGGAGGAGGGAGGAAATAGCGTGGTGGTATGGGGGGGGGTCACTG
GAGG
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Coding sequence (CDS) from alignment at scaffold_2:1297331..1298734+

>mRNA_1128 ID=mRNA_1128|Name=jgi.p|Nanoce1779_2|575433|organism=Nannochloropsis oceanica|type=CDS|length=2100bp|location=Sequence derived from alignment at scaffold_2:1297331..1298734+ (Nannochloropsis oceanica)
ATGATTTCCGCCGTCGCCTCTGAAGCAGCAGGAACGACAGGCACACGGGC
ATCAGAAAGTAACCTCCTACTGCATAATTGTGTGAGGGTCTTGCTCGACG
CAGGGGAGCGGCTGCGCTTACCACAGGAGACCATCGCTACGGCCGTCATA
ATCTTTCACCGGTTTTTCGCCAAGCGGAGCCTGTCTGATCACCTTGCTAA
ACAACGCATGGACGTGGTGCTCATGACCTGCCTCTTCCTTGCTGCCAAGG
TGGAGGAGCAGCCACGCCGTATTCGGGATGCAATCAATTGTGTCTATTTT
GCGCAGAGGCGAATGCAGATTCTTCGTACTGCCTTTACTGCAGATGTTGC
TGGTGGTAACAAAGGTGACAAAGGGGGGGAAAGAGAAGTAGGGAAGAATA
GTGGAGACTTCCGACAGCAGGACGAAAGAAGACATGGAGTGGCAACAGCA
CCGCAACGGGAAGCAGATGCTATTTTGCCGTTAGACCGCGGGTACTGGGA
AATGAAAGAAAGCGTTGTCGACATGGAGCAGCTTGTCTTGCGTGTCCTGG
GCTTCGACCTTGATACCTATCGACCATACCGCATCCTCCTCAACTATGCC
CGTTCGTTACGTGCACGTCCTGTAACGGTCGAAGTGGCCTGGGCGCTCTT
AAACGATTCCTTGTTCTCGCCTGCCTTTTGCTTGACGAGGCCATCGCAAG
CCCAGGCTGTGGCTGTGCTGCATTTGGCACAGCGGTTTCTAATGGTGCAA
GAGCAGGAAGAGGAGGAAGAAGAGAAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAAGATTCGGGTACAACAGCGGGGAGTACCAGCA
GCAGCAACAGCTTCAAGCCCAGAAAACACAATTTTGTCATTAAGAGCAGC
ATACGCTTCAGAAATACGAGCGGTGAAATGCCGGTCAATCGGGGCATGTG
GACAGTGCTGGGAGCAAAGGCTGAAGATGTCGAAGCTTGTAGTAACGATC
TCCTGGCGTTGTATGAGGAGGGGATCGAGCCTTCTTTTGAGAGGGGATGA
ATGATTTCCGCCGTCGCCTCTGAAGCAGCAGGAACGACAGGCACACGGGC
ATCAGAAAGTAACCTCCTACTGCATAATTGTGTGAGGGTCTTGCTCGACG
CAGGGGAGCGGCTGCGCTTACCACAGGAGACCATCGCTACGGCCGTCATA
ATCTTTCACCGGTTTTTCGCCAAGCGGAGCCTGTCTGATCACCTTGCTAA
ACAACGCATGGACGTGGTGCTCATGACCTGCCTCTTCCTTGCTGCCAAGG
TGGAGGAGCAGCCACGCCGTATTCGGGATGCAATCAATTGTGTCTATTTT
GCGCAGAGGCGAATGCAGATTCTTCGTACTGCCTTTACTGCAGATGTTGC
TGGTGGTAACAAAGGTGACAAAGGGGGGGAAAGAGAAGTAGGGAAGAATA
GTGGAGACTTCCGACAGCAGGACGAAAGAAGACATGGAGTGGCAACAGCA
CCGCAACGGGAAGCAGATGCTATTTTGCCGTTAGACCGCGGGTACTGGGA
AATGAAAGAAAGCGTTGTCGACATGGAGCAGCTTGTCTTGCGTGTCCTGG
GCTTCGACCTTGATACCTATCGACCATACCGCATCCTCCTCAACTATGCC
CGTTCGTTACGTGCACGTCCTGTAACGGTCGAAGTGGCCTGGGCGCTCTT
AAACGATTCCTTGTTCTCGCCTGCCTTTTGCTTGACGAGGCCATCGCAAG
CCCAGGCTGTGGCTGTGCTGCATTTGGCACAGCGGTTTCTAATGGTGCAA
GAGCAGGAAGAGGAGGAAGAAGAGAAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAAGATTCGGGTACAACAGCGGGGAGTACCAGCA
GCAGCAACAGCTTCAAGCCCAGAAAACACAATTTTGTCATTAAGAGCAGC
ATACGCTTCAGAAATACGAGCGGTGAAATGCCGGTCAATCGGGGCATGTG
GACAGTGCTGGGAGCAAAGGCTGAAGATGTCGAAGCTTGTAGTAACGATC
TCCTGGCGTTGTATGAGGAGGGGATCGAGCCTTCTTTTGAGAGGGGATGA
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Synonyms
Publications