jgi.p|Nanoce1779_2|522950, mRNA_1124 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|522950
Unique NamemRNA_1124
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length459
Alignment locationscaffold_2:1289841..1290299 -

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Properties
Property NameValue
TranscriptId523036
TrackFilteredModels2
ProteinId522950
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1289841..1290299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522950gene_1124Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1124CDS_1124Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522950mRNA_1124-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1124 ID=mRNA_1124|Name=jgi.p|Nanoce1779_2|522950|organism=Nannochloropsis oceanica|type=mRNA|length=459bp
ATGGCGGGGTTAGAGATAGGGGAGGACGGGGACGTGGTGGAAAGGGAGGG
AGGTGTGGAGGGCGTAGAGGAAGACGATTCAAGCAGTGATGATGAGACGG
GCCAGCGGCAGCAAACGGGCAACGCTGCTGATGCCTACGATGAGGATGAC
GATGCTCCTGAGCCTTTCTTGGATCCGTTGACCATGGAAGTGATGGTAGA
CCCGGCATTAACGCCATCGGGGTACTCGTATGAGAGGGCGGTGATTGTCG
AGCAGATCCGACGGAGGGGTGTGGATCCCATGACACAGCAGCCGTTGGCG
GAGGAGGATTTGAGGCCGAACAGGGCGTTGAGAGAGATGATCGGATTGTG
GAGATTGCGACAGAGGCAGCAGCAGGAGCAGCAGTCGCATGCGGGGAGGC
AAGCGCGGGAGTTCGAGGGGGAGGGAGGGGGAGAGGGGGAGAGTGAAGGT
CGAGGGTGA
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protein sequence of jgi.p|Nanoce1779_2|522950

>mRNA_1124-protein ID=mRNA_1124-protein|Name=jgi.p|Nanoce1779_2|522950|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MAGLEIGEDGDVVEREGGVEGVEEDDSSSDDETGQRQQTGNAADAYDEDD
DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLA
EEDLRPNRALREMIGLWRLRQRQQQEQQSHAGRQAREFEGEGGGEGESEG
RG*
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mRNA from alignment at scaffold_2:1289841..1290299-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1124 ID=mRNA_1124|Name=jgi.p|Nanoce1779_2|522950|organism=Nannochloropsis oceanica|type=mRNA|length=459bp|location=Sequence derived from alignment at scaffold_2:1289841..1290299- (Nannochloropsis oceanica)
ATGGCGGGGTTAGAGATAGGGGAGGACGGGGACGTGGTGGAAAGGGAGGG
AGGTGTGGAGGGCGTAGAGGAAGACGATTCAAGCAGTGATGATGAGACGG
GCCAGCGGCAGCAAACGGGCAACGCTGCTGATGCCTACGATGAGGATGAC
GATGCTCCTGAGCCTTTCTTGGATCCGTTGACCATGGAAGTGATGGTAGA
CCCGGCATTAACGCCATCGGGGTACTCGTATGAGAGGGCGGTGATTGTCG
AGCAGATCCGACGGAGGGGTGTGGATCCCATGACACAGCAGCCGTTGGCG
GAGGAGGATTTGAGGCCGAACAGGGCGTTGAGAGAGATGATCGGATTGTG
GAGATTGCGACAGAGGCAGCAGCAGGAGCAGCAGTCGCATGCGGGGAGGC
AAGCGCGGGAGTTCGAGGGGGAGGGAGGGGGAGAGGGGGAGAGTGAAGGT
CGAGGGTGA
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Coding sequence (CDS) from alignment at scaffold_2:1289841..1290299-

>mRNA_1124 ID=mRNA_1124|Name=jgi.p|Nanoce1779_2|522950|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_2:1289841..1290299- (Nannochloropsis oceanica)
ATGGCGGGGTTAGAGATAGGGGAGGACGGGGACGTGGTGGAAAGGGAGGG
AGGTGTGGAGGGCGTAGAGGAAGACGATTCAAGCAGTGATGATGAGACGG
GCCAGCGGCAGCAAACGGGCAACGCTGCTGATGCCTACGATGAGGATGAC
GATGCTCCTGAGCCTTTCTTGGATCCGTTGACCATGGAAGTGATGGTAGA
CCCGGCATTAACGCCATCGGGGTACTCGTATGAGAGGGCGGTGATTGTCG
AGCAGATCCGACGGAGGGGTGTGGATCCCATGACACAGCAGCCGTTGGCG
GAGGAGGATTTGAGGCCGAACAGGGCGTTGAGAGAGATGATCGGATTGTG
GAGATTGCGACAGAGGCAGCAGCAGGAGCAGCAGTCGCATGCGGGGAGGC
AAGCGCGGGAGTTCGAGGGGGAGGGAGGGGGAGAGGGGGAGAGTGAAGGT
CGAGGGTGA
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Synonyms
Publications