jgi.p|Nanoce1779_2|575405, mRNA_1121 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575405
Unique NamemRNA_1121
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1082
Alignment locationscaffold_2:1279340..1281357 +

Link to JBrowse

Properties
Property NameValue
TranscriptId575491
TrackFilteredModels2
ProteinId575405
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1279340..1281357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575405gene_1121Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575405mRNA_1121-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1121CDS_1121Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1121 ID=mRNA_1121|Name=jgi.p|Nanoce1779_2|575405|organism=Nannochloropsis oceanica|type=mRNA|length=1082bp
CAGACAGGAATACCACCCTCCCACAACCCATGATGGGCGATCAAAGGGGC
CGGGGGAAGGCCTACATGGAAGAGGCCGACAAGGCTCTGAAGCGCTTCGC
CCTCTTCAACGCCAACCAAAAGTTTGAGGACGCATCAGAAGCCTACACCA
AGGCAGGAAACTGCTTCAAGGTCGCCAAGGCATGGGCGGAGGGAGGGGAG
GCCTTCACGAGGGCAAGTGAGTTGCATGTCAAACTTGGCAGCACGTACGA
TGCGGCAAATGCAGCACAGGAAGCGGCAAACTGCTACAAAAATATCAACC
CCGAGGACGCAATTGGGTCCTTTCGTCAAGCCGCGACACTCTTAATGGAA
TTGGGGAAGTTTAAGCAGATCGGGAAGATTCACAAGGACATCGCCGAGAT
ATACGAGAAGGAGGGGAGCTATGACGAAGCCGTGGAGAACTACATGCAGG
CGGCCGAATACTTCAACAGCGAGAACAACAAGAGCAGTGCCAATGACGCC
ATGCAGAAGACAGCCTTCCTCCTCACCACCACCCGTGGGGCCGCGGATCC
CTCCCTTGATAACTATGCGCGTGCGGCTAATATTTTTGAGGAGATGGGCG
TGGCGGCGCTGGACAACCGCCTGTTGCAGTACAATGCCAAGAGCCACTTC
ATGAACGCCCTGCTTTGCTACATGGCAATGGGGGACGAGGTGGCGGTGAA
GCAGAAATTGGAGCACTACAAGGCGTCGGATTACACTTTCGCCGATGCCC
GCGAGTGCAAATTTATCGAGAAGCTCGTCCAGGCCTGGGAGGAAAGCAGC
GCAGATGATTACACGGATCACTGTGCTGAGTACAACGCCATCTCGGCGCT
CGATCCCTGGAAGACGTCGCTGTTGGTGAAGACCAAGAGGATGATCGCCG
CTGTGGAACACGGGGAGGAGGACGTGGATCTGACGTAGAAGGAGGGAGGG
GAGGAGAGAACCCTAGGGAAGGAAGATAGAAGGAGGGGTCGAAGTATATA
AGTGGAGGGAAAAGAAGGGAGGGAGAGAGGGAGGGAAAGAGGGAGGGCGG
AAGGGAAGAAAGATAGAAGGAGGGGTCGAAGT
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protein sequence of jgi.p|Nanoce1779_2|575405

>mRNA_1121-protein ID=mRNA_1121-protein|Name=jgi.p|Nanoce1779_2|575405|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MMGDQRGRGKAYMEEADKALKRFALFNANQKFEDASEAYTKAGNCFKVAK
AWAEGGEAFTRASELHVKLGSTYDAANAAQEAANCYKNINPEDAIGSFRQ
AATLLMELGKFKQIGKIHKDIAEIYEKEGSYDEAVENYMQAAEYFNSENN
KSSANDAMQKTAFLLTTTRGAADPSLDNYARAANIFEEMGVAALDNRLLQ
YNAKSHFMNALLCYMAMGDEVAVKQKLEHYKASDYTFADARECKFIEKLV
QAWEESSADDYTDHCAEYNAISALDPWKTSLLVKTKRMIAAVEHGEEDVD
LT*
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mRNA from alignment at scaffold_2:1279340..1281357+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1121 ID=mRNA_1121|Name=jgi.p|Nanoce1779_2|575405|organism=Nannochloropsis oceanica|type=mRNA|length=2018bp|location=Sequence derived from alignment at scaffold_2:1279340..1281357+ (Nannochloropsis oceanica)
CAGACAGGAATACCACCCTCCCACAACCCATGATGGGCGATCAAAGGGGC CGGGGGAAGGCCTACATGGAAGAGGCCGACAAGGTAACATATCACAAGTA CCCCCTTCTCTCGCCTCCCTCCTTCCAGCGTTAACCCTCTCCTATCTCAC CTATATCCATTTCACCCAAACAGGCTCTGAAGCGCTTCGCCCTCTTCAAC GCCAACCAAAAGTTTGAGGACGCATCAGAAGCCTACACCAAGGCAGGAAA CTGCTTCAAGGTCGCCAAGGCATGGGCGGAGGGAGGGGAGGCCTTCACGA GGGCAAGTGAGTTGCATGTCAAACTTGGCAGCACGTACGATGCGGCAAAT GCAGCACAGGAAGCGGGTGAGTAATATAGCGAGGGAATGGAAAGAGGGGA TGGAAGAGCAGGAACAGATATCCGAAGACATTGACAACATCCATTTCTTC GTGCTGGAAGTACATGGCATTCACCCCTCCCTTTCTCCTTCTTTCGTTCC CTCCCCTACCGCCCTCTCTCCCTTTGTCCTCCGCACAAATACAAACCCAG CAAACTGCTACAAAAATATCAACCCCGAGGACGCAATTGGGTCCTTTCGT CAAGCCGCGACACTCTTAATGGAATTGGGGAAGTTTAAGCAGATCGGGAA GATTCACAAGGACATCGCCGAGATATACGAGAAGGAGGGGAGCTATGACG AAGGTAAGGAGGGAGAGAGGGAGGGAAGGAGTGGGACGTGGGAGTAGAAA GGATGCCGTCCATGACAACGAATTGGCTCAAATATCTATGGTTCTTTTCA TGCCTTCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCCAT AGCCGTGGAGAACTACATGCAGGCGGCCGAATACTTCAACAGCGAGAACA ACAAGAGCAGTGCCAATGACGCCATGCAGAAGACAGCCTTCCTCCTCACC ACCACCCGTGGGGCCGCGGATCCCTCCCTTGATAACTATGCGCGTGCGGC TAATATTTTTGAGGAGGTGCGAGGGACGGGAGGGACGGGACGGACGGACG GGCGGGCGGACGGACATAAGGGAGGGAGGATCGAAAGGCCCCATGAGAAT GCCATTGTTTCATCGCGTCCTCCCTCTCCCCCTCCCTCCCTTCCTCTCCC TCCCTTCCTCCTTCTCGTAGATGGGCGTGGCGGCGCTGGACAACCGCCTG TTGCAGTACAATGCCAAGAGCCACTTCATGAACGCCCTGCTTTGCTACAT GGCAATGGGGGACGAGGTAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGG ATGGTGCAGTACACCTGAAAGGACTGCGCGTGATGAAGATGGGCACGGAT TGAGGAAGCGAAGAGGGGCGTAGAGAGGATTTTAAGATGGCTTCTGTGAT CTCTCTACGGCTCGAAACACCACCACCCCATCTTTTAATTCTTTCTTATT TCTGTTGCCCTCCTTCCTTGTTGTATCTTTCATGCACTGCAGGTGGCGGT GAAGCAGAAATTGGAGCACTACAAGGCGTCGGATTACACTTTCGCCGATG CCCGCGAGTGCAAATTTATCGAGAAGCTCGTCCAGGTAGGGAGGGAGGGA GGGAGGGAGGGAGAGAGGGAGGGAGAGAGGACGTTTCGACACGCTTACTA ACCCTTGGCCCTCCCTCCTTTCCTTCACTCCCTCCCTCCCCCCCTCCCCC CTCATTCCTGCCCCATAGGCCTGGGAGGAAAGCAGCGCAGATGATTACAC GGATCACTGTGCTGAGTACAACGCCATCTCGGCGCTCGATCCCTGGAAGA CGTCGCTGTTGGTGAAGACCAAGAGGATGATCGCCGCTGTGGAACACGGG GAGGAGGACGTGGATCTGACGTAGAAGGAGGGAGGGGAGGAGAGAACCCT AGGGAAGGAAGATAGAAGGAGGGGTCGAAGTATATAAGTGGAGGGAAAAG AAGGGAGGGAGAGAGGGAGGGAAAGAGGGAGGGCGGAAGGGAAGAAAGAT AGAAGGAGGGGTCGAAGT
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Coding sequence (CDS) from alignment at scaffold_2:1279340..1281357+

>mRNA_1121 ID=mRNA_1121|Name=jgi.p|Nanoce1779_2|575405|organism=Nannochloropsis oceanica|type=CDS|length=6363bp|location=Sequence derived from alignment at scaffold_2:1279340..1281357+ (Nannochloropsis oceanica)
ATGATGGGCGATCAAAGGGGCCGGGGGAAGGCCTACATGGAAGAGGCCGA
CAAGGCTCTGAAGCGCTTCGCCCTCTTCAACGCCAACCAAAAGTTTGAGG
ACGCATCAGAAGCCTACACCAAGGCAGGAAACTGCTTCAAGGTCGCCAAG
GCATGGGCGGAGGGAGGGGAGGCCTTCACGAGGGCAAGTGAGTTGCATGT
CAAACTTGGCAGCACGTACGATGCGGCAAATGCAGCACAGGAAGCGGCAA
ACTGCTACAAAAATATCAACCCCGAGGACGCAATTGGGTCCTTTCGTCAA
GCCGCGACACTCTTAATGGAATTGGGGAAGTTTAAGCAGATCGGGAAGAT
TCACAAGGACATCGCCGAGATATACGAGAAGGAGGGGAGCTATGACGAAG
CCGTGGAGAACTACATGCAGGCGGCCGAATACTTCAACAGCGAGAACAAC
AAGAGCAGTGCCAATGACGCCATGCAGAAGACAGCCTTCCTCCTCACCAC
CACCCGTGGGGCCGCGGATCCCTCCCTTGATAACTATGCGCGTGCGGCTA
ATATTTTTGAGGAGATGGGCGTGGCGGCGCTGGACAACCGCCTGTTGCAG
TACAATGCCAAGAGCCACTTCATGAACGCCCTGCTTTGCTACATGGCAAT
GGGGGACGAGGTGGCGGTGAAGCAGAAATTGGAGCACTACAAGGCGTCGG
ATTACACTTTCGCCGATGCCCGCGAGTGCAAATTTATCGAGAAGCTCGTC
CAGGCCTGGGAGGAAAGCAGCGCAGATGATTACACGGATCACTGTGCTGA
GTACAACGCCATCTCGGCGCTCGATCCCTGGAAGACGTCGCTGTTGGTGA
AGACCAAGAGGATGATCGCCGCTGTGGAACACGGGGAGGAGGACGTGGAT
CTGACGTAGATGATGGGCGATCAAAGGGGCCGGGGGAAGGCCTACATGGA
AGAGGCCGACAAGGCTCTGAAGCGCTTCGCCCTCTTCAACGCCAACCAAA
AGTTTGAGGACGCATCAGAAGCCTACACCAAGGCAGGAAACTGCTTCAAG
GTCGCCAAGGCATGGGCGGAGGGAGGGGAGGCCTTCACGAGGGCAAGTGA
GTTGCATGTCAAACTTGGCAGCACGTACGATGCGGCAAATGCAGCACAGG
AAGCGGCAAACTGCTACAAAAATATCAACCCCGAGGACGCAATTGGGTCC
TTTCGTCAAGCCGCGACACTCTTAATGGAATTGGGGAAGTTTAAGCAGAT
CGGGAAGATTCACAAGGACATCGCCGAGATATACGAGAAGGAGGGGAGCT
ATGACGAAGCCGTGGAGAACTACATGCAGGCGGCCGAATACTTCAACAGC
GAGAACAACAAGAGCAGTGCCAATGACGCCATGCAGAAGACAGCCTTCCT
CCTCACCACCACCCGTGGGGCCGCGGATCCCTCCCTTGATAACTATGCGC
GTGCGGCTAATATTTTTGAGGAGATGGGCGTGGCGGCGCTGGACAACCGC
CTGTTGCAGTACAATGCCAAGAGCCACTTCATGAACGCCCTGCTTTGCTA
CATGGCAATGGGGGACGAGGTGGCGGTGAAGCAGAAATTGGAGCACTACA
AGGCGTCGGATTACACTTTCGCCGATGCCCGCGAGTGCAAATTTATCGAG
AAGCTCGTCCAGGCCTGGGAGGAAAGCAGCGCAGATGATTACACGGATCA
CTGTGCTGAGTACAACGCCATCTCGGCGCTCGATCCCTGGAAGACGTCGC
TGTTGGTGAAGACCAAGAGGATGATCGCCGCTGTGGAACACGGGGAGGAG
GACGTGGATCTGACGTAGATGATGGGCGATCAAAGGGGCCGGGGGAAGGC
CTACATGGAAGAGGCCGACAAGGCTCTGAAGCGCTTCGCCCTCTTCAACG
CCAACCAAAAGTTTGAGGACGCATCAGAAGCCTACACCAAGGCAGGAAAC
TGCTTCAAGGTCGCCAAGGCATGGGCGGAGGGAGGGGAGGCCTTCACGAG
GGCAAGTGAGTTGCATGTCAAACTTGGCAGCACGTACGATGCGGCAAATG
CAGCACAGGAAGCGGCAAACTGCTACAAAAATATCAACCCCGAGGACGCA
ATTGGGTCCTTTCGTCAAGCCGCGACACTCTTAATGGAATTGGGGAAGTT
TAAGCAGATCGGGAAGATTCACAAGGACATCGCCGAGATATACGAGAAGG
AGGGGAGCTATGACGAAGCCGTGGAGAACTACATGCAGGCGGCCGAATAC
TTCAACAGCGAGAACAACAAGAGCAGTGCCAATGACGCCATGCAGAAGAC
AGCCTTCCTCCTCACCACCACCCGTGGGGCCGCGGATCCCTCCCTTGATA
ACTATGCGCGTGCGGCTAATATTTTTGAGGAGATGGGCGTGGCGGCGCTG
GACAACCGCCTGTTGCAGTACAATGCCAAGAGCCACTTCATGAACGCCCT
GCTTTGCTACATGGCAATGGGGGACGAGGTGGCGGTGAAGCAGAAATTGG
AGCACTACAAGGCGTCGGATTACACTTTCGCCGATGCCCGCGAGTGCAAA
TTTATCGAGAAGCTCGTCCAGGCCTGGGAGGAAAGCAGCGCAGATGATTA
CACGGATCACTGTGCTGAGTACAACGCCATCTCGGCGCTCGATCCCTGGA
AGACGTCGCTGTTGGTGAAGACCAAGAGGATGATCGCCGCTGTGGAACAC
GGGGAGGAGGACGTGGATCTGACGTAGATGATGGGCGATCAAAGGGGCCG
GGGGAAGGCCTACATGGAAGAGGCCGACAAGGCTCTGAAGCGCTTCGCCC
TCTTCAACGCCAACCAAAAGTTTGAGGACGCATCAGAAGCCTACACCAAG
GCAGGAAACTGCTTCAAGGTCGCCAAGGCATGGGCGGAGGGAGGGGAGGC
CTTCACGAGGGCAAGTGAGTTGCATGTCAAACTTGGCAGCACGTACGATG
CGGCAAATGCAGCACAGGAAGCGGCAAACTGCTACAAAAATATCAACCCC
GAGGACGCAATTGGGTCCTTTCGTCAAGCCGCGACACTCTTAATGGAATT
GGGGAAGTTTAAGCAGATCGGGAAGATTCACAAGGACATCGCCGAGATAT
ACGAGAAGGAGGGGAGCTATGACGAAGCCGTGGAGAACTACATGCAGGCG
GCCGAATACTTCAACAGCGAGAACAACAAGAGCAGTGCCAATGACGCCAT
GCAGAAGACAGCCTTCCTCCTCACCACCACCCGTGGGGCCGCGGATCCCT
CCCTTGATAACTATGCGCGTGCGGCTAATATTTTTGAGGAGATGGGCGTG
GCGGCGCTGGACAACCGCCTGTTGCAGTACAATGCCAAGAGCCACTTCAT
GAACGCCCTGCTTTGCTACATGGCAATGGGGGACGAGGTGGCGGTGAAGC
AGAAATTGGAGCACTACAAGGCGTCGGATTACACTTTCGCCGATGCCCGC
GAGTGCAAATTTATCGAGAAGCTCGTCCAGGCCTGGGAGGAAAGCAGCGC
AGATGATTACACGGATCACTGTGCTGAGTACAACGCCATCTCGGCGCTCG
ATCCCTGGAAGACGTCGCTGTTGGTGAAGACCAAGAGGATGATCGCCGCT
GTGGAACACGGGGAGGAGGACGTGGATCTGACGTAGATGATGGGCGATCA
AAGGGGCCGGGGGAAGGCCTACATGGAAGAGGCCGACAAGGCTCTGAAGC
GCTTCGCCCTCTTCAACGCCAACCAAAAGTTTGAGGACGCATCAGAAGCC
TACACCAAGGCAGGAAACTGCTTCAAGGTCGCCAAGGCATGGGCGGAGGG
AGGGGAGGCCTTCACGAGGGCAAGTGAGTTGCATGTCAAACTTGGCAGCA
CGTACGATGCGGCAAATGCAGCACAGGAAGCGGCAAACTGCTACAAAAAT
ATCAACCCCGAGGACGCAATTGGGTCCTTTCGTCAAGCCGCGACACTCTT
AATGGAATTGGGGAAGTTTAAGCAGATCGGGAAGATTCACAAGGACATCG
CCGAGATATACGAGAAGGAGGGGAGCTATGACGAAGCCGTGGAGAACTAC
ATGCAGGCGGCCGAATACTTCAACAGCGAGAACAACAAGAGCAGTGCCAA
TGACGCCATGCAGAAGACAGCCTTCCTCCTCACCACCACCCGTGGGGCCG
CGGATCCCTCCCTTGATAACTATGCGCGTGCGGCTAATATTTTTGAGGAG
ATGGGCGTGGCGGCGCTGGACAACCGCCTGTTGCAGTACAATGCCAAGAG
CCACTTCATGAACGCCCTGCTTTGCTACATGGCAATGGGGGACGAGGTGG
CGGTGAAGCAGAAATTGGAGCACTACAAGGCGTCGGATTACACTTTCGCC
GATGCCCGCGAGTGCAAATTTATCGAGAAGCTCGTCCAGGCCTGGGAGGA
AAGCAGCGCAGATGATTACACGGATCACTGTGCTGAGTACAACGCCATCT
CGGCGCTCGATCCCTGGAAGACGTCGCTGTTGGTGAAGACCAAGAGGATG
ATCGCCGCTGTGGAACACGGGGAGGAGGACGTGGATCTGACGTAGATGAT
GGGCGATCAAAGGGGCCGGGGGAAGGCCTACATGGAAGAGGCCGACAAGG
CTCTGAAGCGCTTCGCCCTCTTCAACGCCAACCAAAAGTTTGAGGACGCA
TCAGAAGCCTACACCAAGGCAGGAAACTGCTTCAAGGTCGCCAAGGCATG
GGCGGAGGGAGGGGAGGCCTTCACGAGGGCAAGTGAGTTGCATGTCAAAC
TTGGCAGCACGTACGATGCGGCAAATGCAGCACAGGAAGCGGCAAACTGC
TACAAAAATATCAACCCCGAGGACGCAATTGGGTCCTTTCGTCAAGCCGC
GACACTCTTAATGGAATTGGGGAAGTTTAAGCAGATCGGGAAGATTCACA
AGGACATCGCCGAGATATACGAGAAGGAGGGGAGCTATGACGAAGCCGTG
GAGAACTACATGCAGGCGGCCGAATACTTCAACAGCGAGAACAACAAGAG
CAGTGCCAATGACGCCATGCAGAAGACAGCCTTCCTCCTCACCACCACCC
GTGGGGCCGCGGATCCCTCCCTTGATAACTATGCGCGTGCGGCTAATATT
TTTGAGGAGATGGGCGTGGCGGCGCTGGACAACCGCCTGTTGCAGTACAA
TGCCAAGAGCCACTTCATGAACGCCCTGCTTTGCTACATGGCAATGGGGG
ACGAGGTGGCGGTGAAGCAGAAATTGGAGCACTACAAGGCGTCGGATTAC
ACTTTCGCCGATGCCCGCGAGTGCAAATTTATCGAGAAGCTCGTCCAGGC
CTGGGAGGAAAGCAGCGCAGATGATTACACGGATCACTGTGCTGAGTACA
ACGCCATCTCGGCGCTCGATCCCTGGAAGACGTCGCTGTTGGTGAAGACC
AAGAGGATGATCGCCGCTGTGGAACACGGGGAGGAGGACGTGGATCTGAC
GTAGATGATGGGCGATCAAAGGGGCCGGGGGAAGGCCTACATGGAAGAGG
CCGACAAGGCTCTGAAGCGCTTCGCCCTCTTCAACGCCAACCAAAAGTTT
GAGGACGCATCAGAAGCCTACACCAAGGCAGGAAACTGCTTCAAGGTCGC
CAAGGCATGGGCGGAGGGAGGGGAGGCCTTCACGAGGGCAAGTGAGTTGC
ATGTCAAACTTGGCAGCACGTACGATGCGGCAAATGCAGCACAGGAAGCG
GCAAACTGCTACAAAAATATCAACCCCGAGGACGCAATTGGGTCCTTTCG
TCAAGCCGCGACACTCTTAATGGAATTGGGGAAGTTTAAGCAGATCGGGA
AGATTCACAAGGACATCGCCGAGATATACGAGAAGGAGGGGAGCTATGAC
GAAGCCGTGGAGAACTACATGCAGGCGGCCGAATACTTCAACAGCGAGAA
CAACAAGAGCAGTGCCAATGACGCCATGCAGAAGACAGCCTTCCTCCTCA
CCACCACCCGTGGGGCCGCGGATCCCTCCCTTGATAACTATGCGCGTGCG
GCTAATATTTTTGAGGAGATGGGCGTGGCGGCGCTGGACAACCGCCTGTT
GCAGTACAATGCCAAGAGCCACTTCATGAACGCCCTGCTTTGCTACATGG
CAATGGGGGACGAGGTGGCGGTGAAGCAGAAATTGGAGCACTACAAGGCG
TCGGATTACACTTTCGCCGATGCCCGCGAGTGCAAATTTATCGAGAAGCT
CGTCCAGGCCTGGGAGGAAAGCAGCGCAGATGATTACACGGATCACTGTG
CTGAGTACAACGCCATCTCGGCGCTCGATCCCTGGAAGACGTCGCTGTTG
GTGAAGACCAAGAGGATGATCGCCGCTGTGGAACACGGGGAGGAGGACGT
GGATCTGACGTAG
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Synonyms
Publications