jgi.p|Nanoce1779_2|576257, mRNA_112 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576257
Unique Name	mRNA_112
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2607
Alignment location	scaffold_3:300695..303301 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576343
Track	FilteredModels2
ProteinId	576257

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:300695..303301 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576257	gene_112	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576257	mRNA_112-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_112	CDS_112	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:300695..303301+
coding sequence from alignment at scaffold_3:300695..303301+

mRNA sequence

>mRNA_112 ID=mRNA_112|Name=jgi.p|Nanoce1779_2|576257|organism=Nannochloropsis oceanica|type=mRNA|length=2607bp
ATTGGACTGACCTTGGAGGGGGCAGCGTGGGTGGGGGCAGGGAAGTTAGG
AGGTAGCAACAGTAGCAGCAGCAGCAGCAGCAGCGGTGCCACGATCAGCA
TGGTGAAGGGAGGGGAGATGGTAGAGATTTCGCCGGGTCGGTATTTGAAG
CGACGCTACTGGCCCTTTACCATCCGGCTTTTGACCTGCCTTGCCTCCGG
CAGGGGGACGACTATGCTACCTCTGACGACGACCTCAACGGGCGGCAGTA
CCGTAGTGCGTCGCACTGGCACATTCCCGCCTTCTTCTTCTTCCTCCTCC
TTGTCTGTCTTTCCCCCCCCCGGCGACACGGTAGCTTCACGTCTTCTGAA
CCTTGTGAATAACTTCCAACACCACATCCCTCTGCCATCCTCTGCGGAAC
TCTCCCTCCTGGCGATGAGGCCCCATCGCAACCACAATTCTTTCTCCTCT
TCTTCCTCTTTGTCTTGGTACAATATTCCCACGCTTGAACAAGACCTCTT
CGGCCGCCTCCTCCTTCTCAGCAATGTTGCCCTGGCTGTTGCCCCCCTCC
CAGGTCAGCAGCAATCGATACAAGCCAAAAACAGCCGCAAGCTTCAAGTC
CTCCGCCTCCTCGCTCACGTAGGTGGGGCTACACGTTTGCTTGTTCGCTC
CTCTCCCTCTCCTTCGTCATTATCCCAGTTCTCCTCCTCCTTTCTTCCTC
CCTCCCACCTCCTCGCTTACTCCTTTGCCTCGCTCCTCCTTCGCTTTGCC
GCAGAGGCCATTCAAGAGAAGCTGCTCGACGACCTTATCTCCACCCTTTT
TCCAGCTTTTTTCCTCCCTGAACCCCAACATCTCAAATGGACCTCCAACT
CTTCCACCCGTGCACTTATTCCCCTTGCTCCTCCCTCGTCTTCTCCAGAA
ACCAGCACTGCGGGCCTTTCACTCGCGGCAGGCTATGTGGGGGATGTGCT
TCGGTGCCTGGCCCAGGTCCGTTATGGACGAGAGGCCATCATTCAATGGC
TACGAAATTTCCTGCAAGGTGGGTTGGTGCTATTCTTGTCGGACGGGGCC
AAAATTGTGGCTTTGGGTGAGGCGACGACGTCTGGCAGGGAGAGAAGCAA
AGGTTGTGATGAGGGAGGGAGAGGACAAGCACGACTTTTAGCATCGATCG
CCCACGGGCTCTGGCATGCTTGTCCATGTGAACGCCTGCATGTGCCTGCA
GCTGTAGCGCAAGCGAGGGCAAGTGTGGCTTATGAGAAATTACTGGGACC
GTTGGAAGAAGCGATGAACAAGGTTGTCCTGTTCCAGGTGTCCTCCAACA
TCTCCACCAGGTCCTCCTCTGCTTCTTCCTCCTCCTCCATTGCACTGATC
CGACAAGTAGAGACCACCCAAATAGAGAGCAAACTACCTTTTTTCCGGCG
GCAATTTATTCTTGATCTCGACCTTCCCACTGGTCTTTACGCGCCGTTTG
CTCCTACCTTGACGGCACCGGAGAGGGAACGTGCCACAACGAAAGCGTTG
GTGCTCCTGAAGTTGCTGCGGCAGCTCTTTGATCCCCCTCACTGTTCGTG
CCCAAGCAAGAAAGGGGTAAACCAAGGGGAAGAACAAGACGTAGGGGCTT
GTCCAAGTCAGGACCTTTTTCCTGCGATGGGCCCGGTGGTGGGGATGCTT
TTCCAGGCAAGTCGAGGGGGGAAAGGAAGAGCGGGTGATATTGAAGACCG
CTTGTTCTCGCCGGCAATGCGTGTAGCTTTAGCTTTGCTGCAGTGCCCCT
TGAAAGTTACAAGTCAATGCGTAATGACGATGCCAACGAGAACGAGGGTG
ACGTTGTGGCAGTGGGCCACGAACTCTGGCTCTGATGCTGCTGTTGCTGC
TGCTAACGGTGGCGGTGGCGGTGCGGGTGCTGGATGCCAGGACGGCTGCC
AAACAGAATCCAAGCTGCAAGACTTTGTCCTGGAGTGGGGTTGTCTAGTG
GGTCTCCTAGCTGTGGCGCGGGGCGGGGCCATAGGCAGTAGCGCTCAGCA
GCTGCAGCAACAAGAATTGGACTTGCTGATGGAGGCGCTCCAGAAACAAA
CAGGCGCCCGCTTTGCTGAGGTTGAATTGTTACGGGCCAAAAATCTCTTC
ACCCCTTCGAAGCACGTGTGGGGACGACAGGGAGGGAACGCTGATACTGG
AGTTGTGACACCAGATATTTGGAAGGTAGCCAAGGGCGGTAGCAGCAGAG
GTTGTACTGAAGAGGAGGCGGCATTGGCCAAGGAAGTGCAAGCGTATCTA
CTGGCGGGGATGACTGAAGCGCTTGAGAGCGTCGCAGGGAGAGGAGCAGC
GAAAGAGAGGTGTCTCGGTTTGTGGGAGCAGGTCAGACCTTGGTTGTCAA
ACAATCTTTAGGCTGTTCAGTTTTGTCAAAGGAACAAGCGAAACAGTGTA
CATGCCAAATCAGATCGTCGATTTCTGAGAGGGTAGCGTATTGGGATGTT
GAACACCAGGCAGATCATGCACCTACCCCAGCGTAAGAAGTGTAGATAAA
TGGCGGTGAGGTAACGACGTCAATGGTATATAGCTCTCGAGCAATGAGCA
GGCTGTCGTTTGACAAGACCCGACAGATAGGAAGAATAAATGCAACCATC
CCTGCTC

protein sequence of jgi.p|Nanoce1779_2|576257

>mRNA_112-protein ID=mRNA_112-protein|Name=jgi.p|Nanoce1779_2|576257|organism=Nannochloropsis oceanica|type=polypeptide|length=754bp
MVKGGEMVEISPGRYLKRRYWPFTIRLLTCLASGRGTTMLPLTTTSTGGS
TVVRRTGTFPPSSSSSSLSVFPPPGDTVASRLLNLVNNFQHHIPLPSSAE
LSLLAMRPHRNHNSFSSSSSLSWYNIPTLEQDLFGRLLLLSNVALAVAPL
PGQQQSIQAKNSRKLQVLRLLAHVGGATRLLVRSSPSPSSLSQFSSSFLP
PSHLLAYSFASLLLRFAAEAIQEKLLDDLISTLFPAFFLPEPQHLKWTSN
SSTRALIPLAPPSSSPETSTAGLSLAAGYVGDVLRCLAQVRYGREAIIQW
LRNFLQGGLVLFLSDGAKIVALGEATTSGRERSKGCDEGGRGQARLLASI
AHGLWHACPCERLHVPAAVAQARASVAYEKLLGPLEEAMNKVVLFQVSSN
ISTRSSSASSSSSIALIRQVETTQIESKLPFFRRQFILDLDLPTGLYAPF
APTLTAPERERATTKALVLLKLLRQLFDPPHCSCPSKKGVNQGEEQDVGA
CPSQDLFPAMGPVVGMLFQASRGGKGRAGDIEDRLFSPAMRVALALLQCP
LKVTSQCVMTMPTRTRVTLWQWATNSGSDAAVAAANGGGGGAGAGCQDGC
QTESKLQDFVLEWGCLVGLLAVARGGAIGSSAQQLQQQELDLLMEALQKQ
TGARFAEVELLRAKNLFTPSKHVWGRQGGNADTGVVTPDIWKVAKGGSSR
GCTEEEAALAKEVQAYLLAGMTEALESVAGRGAAKERCLGLWEQVRPWLS
NNL*

mRNA from alignment at scaffold_3:300695..303301+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_112 ID=mRNA_112|Name=jgi.p|Nanoce1779_2|576257|organism=Nannochloropsis oceanica|type=mRNA|length=2607bp|location=Sequence derived from alignment at scaffold_3:300695..303301+ (Nannochloropsis oceanica)
ATTGGACTGACCTTGGAGGGGGCAGCGTGGGTGGGGGCAGGGAAGTTAGG
AGGTAGCAACAGTAGCAGCAGCAGCAGCAGCAGCGGTGCCACGATCAGCA
TGGTGAAGGGAGGGGAGATGGTAGAGATTTCGCCGGGTCGGTATTTGAAG
CGACGCTACTGGCCCTTTACCATCCGGCTTTTGACCTGCCTTGCCTCCGG
CAGGGGGACGACTATGCTACCTCTGACGACGACCTCAACGGGCGGCAGTA
CCGTAGTGCGTCGCACTGGCACATTCCCGCCTTCTTCTTCTTCCTCCTCC
TTGTCTGTCTTTCCCCCCCCCGGCGACACGGTAGCTTCACGTCTTCTGAA
CCTTGTGAATAACTTCCAACACCACATCCCTCTGCCATCCTCTGCGGAAC
TCTCCCTCCTGGCGATGAGGCCCCATCGCAACCACAATTCTTTCTCCTCT
TCTTCCTCTTTGTCTTGGTACAATATTCCCACGCTTGAACAAGACCTCTT
CGGCCGCCTCCTCCTTCTCAGCAATGTTGCCCTGGCTGTTGCCCCCCTCC
CAGGTCAGCAGCAATCGATACAAGCCAAAAACAGCCGCAAGCTTCAAGTC
CTCCGCCTCCTCGCTCACGTAGGTGGGGCTACACGTTTGCTTGTTCGCTC
CTCTCCCTCTCCTTCGTCATTATCCCAGTTCTCCTCCTCCTTTCTTCCTC
CCTCCCACCTCCTCGCTTACTCCTTTGCCTCGCTCCTCCTTCGCTTTGCC
GCAGAGGCCATTCAAGAGAAGCTGCTCGACGACCTTATCTCCACCCTTTT
TCCAGCTTTTTTCCTCCCTGAACCCCAACATCTCAAATGGACCTCCAACT
CTTCCACCCGTGCACTTATTCCCCTTGCTCCTCCCTCGTCTTCTCCAGAA
ACCAGCACTGCGGGCCTTTCACTCGCGGCAGGCTATGTGGGGGATGTGCT
TCGGTGCCTGGCCCAGGTCCGTTATGGACGAGAGGCCATCATTCAATGGC
TACGAAATTTCCTGCAAGGTGGGTTGGTGCTATTCTTGTCGGACGGGGCC
AAAATTGTGGCTTTGGGTGAGGCGACGACGTCTGGCAGGGAGAGAAGCAA
AGGTTGTGATGAGGGAGGGAGAGGACAAGCACGACTTTTAGCATCGATCG
CCCACGGGCTCTGGCATGCTTGTCCATGTGAACGCCTGCATGTGCCTGCA
GCTGTAGCGCAAGCGAGGGCAAGTGTGGCTTATGAGAAATTACTGGGACC
GTTGGAAGAAGCGATGAACAAGGTTGTCCTGTTCCAGGTGTCCTCCAACA
TCTCCACCAGGTCCTCCTCTGCTTCTTCCTCCTCCTCCATTGCACTGATC
CGACAAGTAGAGACCACCCAAATAGAGAGCAAACTACCTTTTTTCCGGCG
GCAATTTATTCTTGATCTCGACCTTCCCACTGGTCTTTACGCGCCGTTTG
CTCCTACCTTGACGGCACCGGAGAGGGAACGTGCCACAACGAAAGCGTTG
GTGCTCCTGAAGTTGCTGCGGCAGCTCTTTGATCCCCCTCACTGTTCGTG
CCCAAGCAAGAAAGGGGTAAACCAAGGGGAAGAACAAGACGTAGGGGCTT
GTCCAAGTCAGGACCTTTTTCCTGCGATGGGCCCGGTGGTGGGGATGCTT
TTCCAGGCAAGTCGAGGGGGGAAAGGAAGAGCGGGTGATATTGAAGACCG
CTTGTTCTCGCCGGCAATGCGTGTAGCTTTAGCTTTGCTGCAGTGCCCCT
TGAAAGTTACAAGTCAATGCGTAATGACGATGCCAACGAGAACGAGGGTG
ACGTTGTGGCAGTGGGCCACGAACTCTGGCTCTGATGCTGCTGTTGCTGC
TGCTAACGGTGGCGGTGGCGGTGCGGGTGCTGGATGCCAGGACGGCTGCC
AAACAGAATCCAAGCTGCAAGACTTTGTCCTGGAGTGGGGTTGTCTAGTG
GGTCTCCTAGCTGTGGCGCGGGGCGGGGCCATAGGCAGTAGCGCTCAGCA
GCTGCAGCAACAAGAATTGGACTTGCTGATGGAGGCGCTCCAGAAACAAA
CAGGCGCCCGCTTTGCTGAGGTTGAATTGTTACGGGCCAAAAATCTCTTC
ACCCCTTCGAAGCACGTGTGGGGACGACAGGGAGGGAACGCTGATACTGG
AGTTGTGACACCAGATATTTGGAAGGTAGCCAAGGGCGGTAGCAGCAGAG
GTTGTACTGAAGAGGAGGCGGCATTGGCCAAGGAAGTGCAAGCGTATCTA
CTGGCGGGGATGACTGAAGCGCTTGAGAGCGTCGCAGGGAGAGGAGCAGC
GAAAGAGAGGTGTCTCGGTTTGTGGGAGCAGGTCAGACCTTGGTTGTCAA
ACAATCTTTAGGCTGTTCAGTTTTGTCAAAGGAACAAGCGAAACAGTGTA
CATGCCAAATCAGATCGTCGATTTCTGAGAGGGTAGCGTATTGGGATGTT
GAACACCAGGCAGATCATGCACCTACCCCAGCGTAAGAAGTGTAGATAAA
TGGCGGTGAGGTAACGACGTCAATGGTATATAGCTCTCGAGCAATGAGCA
GGCTGTCGTTTGACAAGACCCGACAGATAGGAAGAATAAATGCAACCATC
CCTGCTC

Coding sequence (CDS) from alignment at scaffold_3:300695..303301+

>mRNA_112 ID=mRNA_112|Name=jgi.p|Nanoce1779_2|576257|organism=Nannochloropsis oceanica|type=CDS|length=2262bp|location=Sequence derived from alignment at scaffold_3:300695..303301+ (Nannochloropsis oceanica)
ATGGTGAAGGGAGGGGAGATGGTAGAGATTTCGCCGGGTCGGTATTTGAA
GCGACGCTACTGGCCCTTTACCATCCGGCTTTTGACCTGCCTTGCCTCCG
GCAGGGGGACGACTATGCTACCTCTGACGACGACCTCAACGGGCGGCAGT
ACCGTAGTGCGTCGCACTGGCACATTCCCGCCTTCTTCTTCTTCCTCCTC
CTTGTCTGTCTTTCCCCCCCCCGGCGACACGGTAGCTTCACGTCTTCTGA
ACCTTGTGAATAACTTCCAACACCACATCCCTCTGCCATCCTCTGCGGAA
CTCTCCCTCCTGGCGATGAGGCCCCATCGCAACCACAATTCTTTCTCCTC
TTCTTCCTCTTTGTCTTGGTACAATATTCCCACGCTTGAACAAGACCTCT
TCGGCCGCCTCCTCCTTCTCAGCAATGTTGCCCTGGCTGTTGCCCCCCTC
CCAGGTCAGCAGCAATCGATACAAGCCAAAAACAGCCGCAAGCTTCAAGT
CCTCCGCCTCCTCGCTCACGTAGGTGGGGCTACACGTTTGCTTGTTCGCT
CCTCTCCCTCTCCTTCGTCATTATCCCAGTTCTCCTCCTCCTTTCTTCCT
CCCTCCCACCTCCTCGCTTACTCCTTTGCCTCGCTCCTCCTTCGCTTTGC
CGCAGAGGCCATTCAAGAGAAGCTGCTCGACGACCTTATCTCCACCCTTT
TTCCAGCTTTTTTCCTCCCTGAACCCCAACATCTCAAATGGACCTCCAAC
TCTTCCACCCGTGCACTTATTCCCCTTGCTCCTCCCTCGTCTTCTCCAGA
AACCAGCACTGCGGGCCTTTCACTCGCGGCAGGCTATGTGGGGGATGTGC
TTCGGTGCCTGGCCCAGGTCCGTTATGGACGAGAGGCCATCATTCAATGG
CTACGAAATTTCCTGCAAGGTGGGTTGGTGCTATTCTTGTCGGACGGGGC
CAAAATTGTGGCTTTGGGTGAGGCGACGACGTCTGGCAGGGAGAGAAGCA
AAGGTTGTGATGAGGGAGGGAGAGGACAAGCACGACTTTTAGCATCGATC
GCCCACGGGCTCTGGCATGCTTGTCCATGTGAACGCCTGCATGTGCCTGC
AGCTGTAGCGCAAGCGAGGGCAAGTGTGGCTTATGAGAAATTACTGGGAC
CGTTGGAAGAAGCGATGAACAAGGTTGTCCTGTTCCAGGTGTCCTCCAAC
ATCTCCACCAGGTCCTCCTCTGCTTCTTCCTCCTCCTCCATTGCACTGAT
CCGACAAGTAGAGACCACCCAAATAGAGAGCAAACTACCTTTTTTCCGGC
GGCAATTTATTCTTGATCTCGACCTTCCCACTGGTCTTTACGCGCCGTTT
GCTCCTACCTTGACGGCACCGGAGAGGGAACGTGCCACAACGAAAGCGTT
GGTGCTCCTGAAGTTGCTGCGGCAGCTCTTTGATCCCCCTCACTGTTCGT
GCCCAAGCAAGAAAGGGGTAAACCAAGGGGAAGAACAAGACGTAGGGGCT
TGTCCAAGTCAGGACCTTTTTCCTGCGATGGGCCCGGTGGTGGGGATGCT
TTTCCAGGCAAGTCGAGGGGGGAAAGGAAGAGCGGGTGATATTGAAGACC
GCTTGTTCTCGCCGGCAATGCGTGTAGCTTTAGCTTTGCTGCAGTGCCCC
TTGAAAGTTACAAGTCAATGCGTAATGACGATGCCAACGAGAACGAGGGT
GACGTTGTGGCAGTGGGCCACGAACTCTGGCTCTGATGCTGCTGTTGCTG
CTGCTAACGGTGGCGGTGGCGGTGCGGGTGCTGGATGCCAGGACGGCTGC
CAAACAGAATCCAAGCTGCAAGACTTTGTCCTGGAGTGGGGTTGTCTAGT
GGGTCTCCTAGCTGTGGCGCGGGGCGGGGCCATAGGCAGTAGCGCTCAGC
AGCTGCAGCAACAAGAATTGGACTTGCTGATGGAGGCGCTCCAGAAACAA
ACAGGCGCCCGCTTTGCTGAGGTTGAATTGTTACGGGCCAAAAATCTCTT
CACCCCTTCGAAGCACGTGTGGGGACGACAGGGAGGGAACGCTGATACTG
GAGTTGTGACACCAGATATTTGGAAGGTAGCCAAGGGCGGTAGCAGCAGA
GGTTGTACTGAAGAGGAGGCGGCATTGGCCAAGGAAGTGCAAGCGTATCT
ACTGGCGGGGATGACTGAAGCGCTTGAGAGCGTCGCAGGGAGAGGAGCAG
CGAAAGAGAGGTGTCTCGGTTTGTGGGAGCAGGTCAGACCTTGGTTGTCA
AACAATCTTTAG

Synonyms

Publications