jgi.p|Nanoce1779_2|383127, mRNA_11136 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|383127
Unique Name	mRNA_11136
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	869
Alignment location	scaffold_65:56079..58073 +

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Properties


Property Name	Value
TranscriptId	383213
Track	FilteredModels2
ProteinId	383127

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_65	supercontig	scaffold_65:56079..58073 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|383127	gene_11136	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|383127	mRNA_11136-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11136	CDS_11136	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_65:56079..58073+
coding sequence from alignment at scaffold_65:56079..58073+

mRNA sequence

>mRNA_11136 ID=mRNA_11136|Name=jgi.p|Nanoce1779_2|383127|organism=Nannochloropsis oceanica|type=mRNA|length=869bp
GCGCGTCTAGAAGACGAGGCTTGTGTCACGTTTCCGTTGTTTTTGAAGGG
GAGGAAGGAGGAACTGAAGGAGGGGGGGGTCTCTCTTCTCCTCTCTGCGT
ATGACGACTCGAAGAAGAGGGATCGTCTGCGAGTCCCGGCCACTTTTTGA
AGGCGCTCGCACCGTAAAAATGCTGCGGGAGATGGGGTATACGGATGTGA
TGCTCATCACCGACGCACAGATGGGGATCTTCGCCCAACTCGCCAACCTT
TGCCTACTAGGGGCCGACAGCCTCCTCGTTCCCCCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCCGCCTATGGCCATCAATAAGGCTGGCT
CTCTGCCCCTGGCATTGTGCTGTCAACATTTCGGAGTGCCTGTCTACGTC
CTCTCAAGCGAGCTCAAGATCTCCTCCTCCTCGCACTCCTTCTCGCCCTT
GGCCATGGAAGCCATGAGTCGAGAGGAAGTGACAGAAGACTGTGCTGTCG
GGAGACTGCTTGAGCCCTTCCTCGATGGCGTTGAGATATCAAATGTCTAC
TTCGAGGGTCTTCCTCTGGGAGAGAGAGAAAGAACGAAAGGAGGAGGGGG
AGGAGGAGGAGTGGTGACAGCGGTAGTAATGGAGGGCGGGGTATGCAAGG
ACGTTCGAGAAAGGGCCGAGCGGCGGAAGGAGGCCTTTGAGGCACTCTTC
TATGGGTGAAGAGAGAGGGGGATGATGAAGGAACGAGGTCAAGAAATGGA
AAAGGGAATGGGATGGGGGAGTGTCTATAGTGCTAAGTGTTGAGAGTAGA
GCAGATGATTGCAAAACCAAGGAAACCCTAAACAGTCAGGCTGAAGAGGG
AGGCCGTGACGTCTTACAT

protein sequence of jgi.p|Nanoce1779_2|383127

>mRNA_11136-protein ID=mRNA_11136-protein|Name=jgi.p|Nanoce1779_2|383127|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MTTRRRGIVCESRPLFEGARTVKMLREMGYTDVMLITDAQMGIFAQLANL
CLLGADSLLVPPLPPSLPPSLPPSPPMAINKAGSLPLALCCQHFGVPVYV
LSSELKISSSSHSFSPLAMEAMSREEVTEDCAVGRLLEPFLDGVEISNVY
FEGLPLGERERTKGGGGGGGVVTAVVMEGGVCKDVRERAERRKEAFEALF
YG*

mRNA from alignment at scaffold_65:56079..58073+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11136 ID=mRNA_11136|Name=jgi.p|Nanoce1779_2|383127|organism=Nannochloropsis oceanica|type=mRNA|length=1995bp|location=Sequence derived from alignment at scaffold_65:56079..58073+ (Nannochloropsis oceanica)
GCGCGTCTAGAAGACGAGGCTTGTGTCACGTTTCCGTTGTTTTTGAAGGG
GAGGAAGGAGGAACTGAAGGAGGGGGGGGTCTCTCTTCTCCTCTCTGCGT
ATGACGACTCGAAGAAGAGGGGTGAGAGGAGGACGGGAGGGAGGGAGGGG
GGGAGGGGGCTGACGATTATGACGCTATCGTTGTCGTCGACTGTGATGGA
GGTAATGGAGGGATTCAGAAAGAGGTTGGAGGAGGAGGAGGAGGAAGGGA
GGGAGGAAGGGGGAGGAGAAGTGAAGGTGGTGAGTGGGGAGGGAGGGAGA
GAAGGAGGGAGGGAGAGAGAAATAAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGATCAACCTGTGGTCTGTAGCTGAGAAGAGTCACTCAAATTCA
TCCGTCAATGGTACACTCACGCCGCAGCCCCTCTCTCCGTCCTTTCCACC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGTGTCAGATCGTCTGC
GAGTCCCGGCCACTTTTTGAAGGCGCTCGCACCGTAAAAATGCTGCGGGA
GATGGGGTATACGGATGTGATGCTCATCACCGACGCACAGGTAGGGAGGG
AGGGAGGGAGGGCAGAATTTCACTTTCACACCGCACACGCAATTCTTACT
CTCCTCCCTCCTCCTCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCAAGATGGGGATCTTCGCCCAACTCGCCAACC
TTTGCCTACTAGGGGCCGACAGCCTCCTCGTTCCCCCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCCGCCTATGGCCATCAATAAGGCTGG
CTCTCTGCCCCTGGCATTGTGCTGTCAACATTTCGGAGTGCCTGTCTACG
TCCTCTCAAGCGAGCTCAAGGTACGTCCCTCTCTCCTTTCAACCCTTCTT
CCCTCCTTCCCTCCCTCCTTCAACGCTCCCCTCCCTTCTTTCCTTTCCTC
TTCCCACCCCCCCTCTCTTCTGCCCTCCCTCCTTCCTCCCTTGGCAGCCA
CACGGCTTTTTCCTTTTTCTCCACATCACGACCAAAATGAATCATTGTAC
CTCCCCGGCCTCCGCCCAACCGTCCCTCTGTCCCTCCCGCCCTTTCTCCC
TCCCTCCCTCTCTGCCTAGATCTCCTCCTCCTCGCACTCCTTCTCGCCCT
TGGCCATGGAAGCCATGAGTCGAGAGGAAGTGACAGAAGACTGTGCTGTC
GGGAGACTGCTTGAGGTGAGCGAAGGGAGGGAGGGAGGGAGAGAGGGAGG
GAGGGATGGGAAATGGAAGATATACGAAATAGGAAACATATTTTCTCTTT
CTTTTTGATTTGTTTTTAAATGAAAAGGAGCACCGCAACTGAAAATTTTC
ATCCGTATGTATCGAAGCCAGACTTTTTCATTTATTCACGTTGGTGTTTC
TCGATATGCTCTTTGCCCCTTCCTCCATCCCCCCTCTCCTCCTTCCCTCC
CTCTAGCCCTTCCTCGATGGCGTTGAGATATCAAATGTCTACTTCGAGGG
TCTTCCTCTGGGAGAGAGAGAAAGAACGAAAGGAGGAGGGGGAGGAGGAG
GAGTGGTGACAGCGGTAGTAATGGAGGGCGGGGTATGCAAGGACGTTCGA
GAAAGGTGAGGGGAAAGGGAGGATGGATGGAGGGAAGTGGAAAGAGGGGG
TTTCAACTTTTAAGGCTGATACCTAATGAGAGAATAGTGAGAGGACTTGT
CCCTTGATAAACGCATACACTATCCAAAATAATTTACAGGGCCGAGCGGC
GGAAGGAGGCCTTTGAGGCACTCTTCTATGGGTGAAGAGAGAGGGGGATG
ATGAAGGAACGAGGTCAAGAAATGGAAAAGGGAATGGGATGGGGGAGTGT
CTATAGTGCTAAGTGTTGAGAGTAGAGCAGATGATTGCAAAACCAAGGAA
ACCCTAAACAGTCAGGCTGAAGAGGGAGGCCGTGACGTCTTACAT

Coding sequence (CDS) from alignment at scaffold_65:56079..58073+

>mRNA_11136 ID=mRNA_11136|Name=jgi.p|Nanoce1779_2|383127|organism=Nannochloropsis oceanica|type=CDS|length=3654bp|location=Sequence derived from alignment at scaffold_65:56079..58073+ (Nannochloropsis oceanica)
ATGACGACTCGAAGAAGAGGGATCGTCTGCGAGTCCCGGCCACTTTTTGA
AGGCGCTCGCACCGTAAAAATGCTGCGGGAGATGGGGTATACGGATGTGA
TGCTCATCACCGACGCACAGATGGGGATCTTCGCCCAACTCGCCAACCTT
TGCCTACTAGGGGCCGACAGCCTCCTCGTTCCCCCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCCGCCTATGGCCATCAATAAGGCTGGCT
CTCTGCCCCTGGCATTGTGCTGTCAACATTTCGGAGTGCCTGTCTACGTC
CTCTCAAGCGAGCTCAAGATCTCCTCCTCCTCGCACTCCTTCTCGCCCTT
GGCCATGGAAGCCATGAGTCGAGAGGAAGTGACAGAAGACTGTGCTGTCG
GGAGACTGCTTGAGCCCTTCCTCGATGGCGTTGAGATATCAAATGTCTAC
TTCGAGGGTCTTCCTCTGGGAGAGAGAGAAAGAACGAAAGGAGGAGGGGG
AGGAGGAGGAGTGGTGACAGCGGTAGTAATGGAGGGCGGGGTATGCAAGG
ACGTTCGAGAAAGGGCCGAGCGGCGGAAGGAGGCCTTTGAGGCACTCTTC
TATGGGTGAATGACGACTCGAAGAAGAGGGATCGTCTGCGAGTCCCGGCC
ACTTTTTGAAGGCGCTCGCACCGTAAAAATGCTGCGGGAGATGGGGTATA
CGGATGTGATGCTCATCACCGACGCACAGATGGGGATCTTCGCCCAACTC
GCCAACCTTTGCCTACTAGGGGCCGACAGCCTCCTCGTTCCCCCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCGCCTATGGCCATCAATA
AGGCTGGCTCTCTGCCCCTGGCATTGTGCTGTCAACATTTCGGAGTGCCT
GTCTACGTCCTCTCAAGCGAGCTCAAGATCTCCTCCTCCTCGCACTCCTT
CTCGCCCTTGGCCATGGAAGCCATGAGTCGAGAGGAAGTGACAGAAGACT
GTGCTGTCGGGAGACTGCTTGAGCCCTTCCTCGATGGCGTTGAGATATCA
AATGTCTACTTCGAGGGTCTTCCTCTGGGAGAGAGAGAAAGAACGAAAGG
AGGAGGGGGAGGAGGAGGAGTGGTGACAGCGGTAGTAATGGAGGGCGGGG
TATGCAAGGACGTTCGAGAAAGGGCCGAGCGGCGGAAGGAGGCCTTTGAG
GCACTCTTCTATGGGTGAATGACGACTCGAAGAAGAGGGATCGTCTGCGA
GTCCCGGCCACTTTTTGAAGGCGCTCGCACCGTAAAAATGCTGCGGGAGA
TGGGGTATACGGATGTGATGCTCATCACCGACGCACAGATGGGGATCTTC
GCCCAACTCGCCAACCTTTGCCTACTAGGGGCCGACAGCCTCCTCGTTCC
CCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCGCCTATGG
CCATCAATAAGGCTGGCTCTCTGCCCCTGGCATTGTGCTGTCAACATTTC
GGAGTGCCTGTCTACGTCCTCTCAAGCGAGCTCAAGATCTCCTCCTCCTC
GCACTCCTTCTCGCCCTTGGCCATGGAAGCCATGAGTCGAGAGGAAGTGA
CAGAAGACTGTGCTGTCGGGAGACTGCTTGAGCCCTTCCTCGATGGCGTT
GAGATATCAAATGTCTACTTCGAGGGTCTTCCTCTGGGAGAGAGAGAAAG
AACGAAAGGAGGAGGGGGAGGAGGAGGAGTGGTGACAGCGGTAGTAATGG
AGGGCGGGGTATGCAAGGACGTTCGAGAAAGGGCCGAGCGGCGGAAGGAG
GCCTTTGAGGCACTCTTCTATGGGTGAATGACGACTCGAAGAAGAGGGAT
CGTCTGCGAGTCCCGGCCACTTTTTGAAGGCGCTCGCACCGTAAAAATGC
TGCGGGAGATGGGGTATACGGATGTGATGCTCATCACCGACGCACAGATG
GGGATCTTCGCCCAACTCGCCAACCTTTGCCTACTAGGGGCCGACAGCCT
CCTCGTTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
CGCCTATGGCCATCAATAAGGCTGGCTCTCTGCCCCTGGCATTGTGCTGT
CAACATTTCGGAGTGCCTGTCTACGTCCTCTCAAGCGAGCTCAAGATCTC
CTCCTCCTCGCACTCCTTCTCGCCCTTGGCCATGGAAGCCATGAGTCGAG
AGGAAGTGACAGAAGACTGTGCTGTCGGGAGACTGCTTGAGCCCTTCCTC
GATGGCGTTGAGATATCAAATGTCTACTTCGAGGGTCTTCCTCTGGGAGA
GAGAGAAAGAACGAAAGGAGGAGGGGGAGGAGGAGGAGTGGTGACAGCGG
TAGTAATGGAGGGCGGGGTATGCAAGGACGTTCGAGAAAGGGCCGAGCGG
CGGAAGGAGGCCTTTGAGGCACTCTTCTATGGGTGAATGACGACTCGAAG
AAGAGGGATCGTCTGCGAGTCCCGGCCACTTTTTGAAGGCGCTCGCACCG
TAAAAATGCTGCGGGAGATGGGGTATACGGATGTGATGCTCATCACCGAC
GCACAGATGGGGATCTTCGCCCAACTCGCCAACCTTTGCCTACTAGGGGC
CGACAGCCTCCTCGTTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCCGCCTATGGCCATCAATAAGGCTGGCTCTCTGCCCCTGGCA
TTGTGCTGTCAACATTTCGGAGTGCCTGTCTACGTCCTCTCAAGCGAGCT
CAAGATCTCCTCCTCCTCGCACTCCTTCTCGCCCTTGGCCATGGAAGCCA
TGAGTCGAGAGGAAGTGACAGAAGACTGTGCTGTCGGGAGACTGCTTGAG
CCCTTCCTCGATGGCGTTGAGATATCAAATGTCTACTTCGAGGGTCTTCC
TCTGGGAGAGAGAGAAAGAACGAAAGGAGGAGGGGGAGGAGGAGGAGTGG
TGACAGCGGTAGTAATGGAGGGCGGGGTATGCAAGGACGTTCGAGAAAGG
GCCGAGCGGCGGAAGGAGGCCTTTGAGGCACTCTTCTATGGGTGAATGAC
GACTCGAAGAAGAGGGATCGTCTGCGAGTCCCGGCCACTTTTTGAAGGCG
CTCGCACCGTAAAAATGCTGCGGGAGATGGGGTATACGGATGTGATGCTC
ATCACCGACGCACAGATGGGGATCTTCGCCCAACTCGCCAACCTTTGCCT
ACTAGGGGCCGACAGCCTCCTCGTTCCCCCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCCGCCTATGGCCATCAATAAGGCTGGCTCTCTG
CCCCTGGCATTGTGCTGTCAACATTTCGGAGTGCCTGTCTACGTCCTCTC
AAGCGAGCTCAAGATCTCCTCCTCCTCGCACTCCTTCTCGCCCTTGGCCA
TGGAAGCCATGAGTCGAGAGGAAGTGACAGAAGACTGTGCTGTCGGGAGA
CTGCTTGAGCCCTTCCTCGATGGCGTTGAGATATCAAATGTCTACTTCGA
GGGTCTTCCTCTGGGAGAGAGAGAAAGAACGAAAGGAGGAGGGGGAGGAG
GAGGAGTGGTGACAGCGGTAGTAATGGAGGGCGGGGTATGCAAGGACGTT
CGAGAAAGGGCCGAGCGGCGGAAGGAGGCCTTTGAGGCACTCTTCTATGG
GTGA

Synonyms

Publications