jgi.p|Nanoce1779_2|612538, mRNA_11132 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612538
Unique NamemRNA_11132
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length627
Alignment locationscaffold_65:40320..40946 +

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Properties
Property NameValue
TranscriptId612624
TrackFilteredModels2
ProteinId612538
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:40320..40946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612538gene_11132Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612538mRNA_11132-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11132CDS_11132Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11132 ID=mRNA_11132|Name=jgi.p|Nanoce1779_2|612538|organism=Nannochloropsis oceanica|type=mRNA|length=627bp
GAAGACTCTTTGTTGTGAGTGATGGAGGGAAGGAAGGAGGGAGGGAAGGG
GGGACGGTTGTGCAGCGTTGAATACATCTGTGTTTATTTGTATTTATATA
CACGAACACATCTACATATATATTTGTATATCTTTAAATGTCGGCATAAA
TGTATTCAGGGTATTCGTTTGTCTCTGTCATCTGTGTATTGGTCTTCTTT
GGTTCCTTTTCAGATCACCCTCAATTAATTTCTTTCGTTGTTTGTTTTCT
CGCGCCCTCGTCTTCCTTCCTCTTTCCCCGCTCCTTCTCCATCTCCTCCT
TCATCTCCGCCGTCTTTCTTTCCCCTGCTCTTCATCCCTCCTCGCTCAGT
CCGAAACAGATCCCTGACACCCTCCCTCTATCCCCCCCTCTTCCCCTCCC
CTCCCTTCCCTTCCTGTCTTCCCGTATCCTCCTCCCTCTTATCGATTCCC
CACATTTATTTGCTTTTCTCCCTTTTCGTGATCTTTGAACCACAAGTCCC
TCCATCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCTTCACCCTCTAG
TCGCTATCACTGTCACTGGAGGAGGAAGAGGAGGAGGAAGACCCGCTGCT
GCTGCTGCTGCTACCACTGCTACTACT
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protein sequence of jgi.p|Nanoce1779_2|612538

>mRNA_11132-protein ID=mRNA_11132-protein|Name=jgi.p|Nanoce1779_2|612538|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MYSGYSFVSVICVLVFFGSFSDHPQLISFVVCFLAPSSSFLFPRSFSISS
FISAVFLSPALHPSSLSPKQIPDTLPLSPPLPLPSLPFLSSRILLPLIDS
PHLFAFLPFRDL*
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mRNA from alignment at scaffold_65:40320..40946+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11132 ID=mRNA_11132|Name=jgi.p|Nanoce1779_2|612538|organism=Nannochloropsis oceanica|type=mRNA|length=627bp|location=Sequence derived from alignment at scaffold_65:40320..40946+ (Nannochloropsis oceanica)
GAAGACTCTTTGTTGTGAGTGATGGAGGGAAGGAAGGAGGGAGGGAAGGG
GGGACGGTTGTGCAGCGTTGAATACATCTGTGTTTATTTGTATTTATATA
CACGAACACATCTACATATATATTTGTATATCTTTAAATGTCGGCATAAA
TGTATTCAGGGTATTCGTTTGTCTCTGTCATCTGTGTATTGGTCTTCTTT
GGTTCCTTTTCAGATCACCCTCAATTAATTTCTTTCGTTGTTTGTTTTCT
CGCGCCCTCGTCTTCCTTCCTCTTTCCCCGCTCCTTCTCCATCTCCTCCT
TCATCTCCGCCGTCTTTCTTTCCCCTGCTCTTCATCCCTCCTCGCTCAGT
CCGAAACAGATCCCTGACACCCTCCCTCTATCCCCCCCTCTTCCCCTCCC
CTCCCTTCCCTTCCTGTCTTCCCGTATCCTCCTCCCTCTTATCGATTCCC
CACATTTATTTGCTTTTCTCCCTTTTCGTGATCTTTGAACCACAAGTCCC
TCCATCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCTTCACCCTCTAG
TCGCTATCACTGTCACTGGAGGAGGAAGAGGAGGAGGAAGACCCGCTGCT
GCTGCTGCTGCTACCACTGCTACTACT
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Coding sequence (CDS) from alignment at scaffold_65:40320..40946+

>mRNA_11132 ID=mRNA_11132|Name=jgi.p|Nanoce1779_2|612538|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_65:40320..40946+ (Nannochloropsis oceanica)
ATGTATTCAGGGTATTCGTTTGTCTCTGTCATCTGTGTATTGGTCTTCTT
TGGTTCCTTTTCAGATCACCCTCAATTAATTTCTTTCGTTGTTTGTTTTC
TCGCGCCCTCGTCTTCCTTCCTCTTTCCCCGCTCCTTCTCCATCTCCTCC
TTCATCTCCGCCGTCTTTCTTTCCCCTGCTCTTCATCCCTCCTCGCTCAG
TCCGAAACAGATCCCTGACACCCTCCCTCTATCCCCCCCTCTTCCCCTCC
CCTCCCTTCCCTTCCTGTCTTCCCGTATCCTCCTCCCTCTTATCGATTCC
CCACATTTATTTGCTTTTCTCCCTTTTCGTGATCTTTGA
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Synonyms
Publications