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Properties
| Property Name | Value |
|---|
| TranscriptId | 612620 |
| Track | FilteredModels2 |
| ProteinId | 612534 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_65 | supercontig | scaffold_65:37867..40121 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11131 ID=mRNA_11131|Name=jgi.p|Nanoce1779_2|612534|organism=Nannochloropsis oceanica|type=mRNA|length=1286bp
CTCATTGAGTACCCTTAACTGTGAGCAAAATATAGAAACAACATCAATAA
AGAAGAAGAACAGCAATAACAAGAACAATCTTTTTTTTGTTTCGTCGGTG
GGGATGATATGCCCGCTATATCTTTCGTTTTACTTCTCCATCTATGCCAT
GCACTCTGATAAGATAGGTAACAGGACACGGGCGATGTCATGCATTTAAT
GTACTTGCGACTTGCGGTGAAGATAGATACCAGTCTCCATGCCTGCATGT
GGCTGTAACGGACATTTAAGGGTCGTCCTCCATCACTCAGATACACCACG
TTGCGTAGCACCAACCCAGTCACCTTGTTTCTCTAGTCCAGAAACCTGTT
CTTGCCGGGCGCTAGGTAACTCTGCCTAAGCACAGGACCAAGGCACATGC
ACCCATCAACAGTTGTACTATGTGTCTAGGCACGCAGGATCGACCTCCTC
TCCCCCGCCTACGTCTTCATATTTTGCAATTACACCTCGCAAAGCTCGCT
TTCGTTTTTTTCCGGGGCCTCGCCTGCTCCTTCATCCTCGTCTTTATCTC
CCAGTCAGAACACGCCCAAGCTCACTCAAAACTATTTCTCCACTAACATC
TCTCCCTCTCTGTCTTCGTTTTGATTACCTGCTGACACGTGAATCTCTTC
TCATTTACTCTCCAGCACATCATGCACGTACTTTCTTACGCCGCCTTGGC
CTTGGCTGCCTGTGCTTCCCAGACTCTTGCCTTTGTGCCCGCAGGACCGC
TGTCGGGAATGGCTTCGAGCAGCAAGAGCCGCCTGCACGCCACCAAGATG
ACCATCGACGTCGGGAGCAAGCTACCCCTCACCACCACCTTCCAGCACCT
GGCTGACGGCAAGCCCACGGATGTGCCCGCATTGGAACTTTTCGCAGGGA
AGAAAATTGTGCTGGTCGGCGTCCCCGGGGCTTTGACTCCCACCTGCTCG
AACACCCACGTGCCGGGCTACATCGCCAAGGCCGCCGACTTCAAGGCCAA
GGGCGTGGATGACATCATCGTGCTGGCCGTCAACGATTGCTTCGCCATGC
GCGCTTGGGAGAAGACGTTCGAGACGGACAAGGTGAAGTTCTACGCGGAC
GGTGGCGCCTCCTTTACCAAGGCTGCGGGCTTGGAGTTTGACACGGGCGA
TTTCGGGGGCCTCCGTATGCAGCGAATGTCAGCTCTGGTGGAGGACGGCG
TGGTGAAGAAGATTCACTTGGAGGGGGGGGGCGGCCTCTCCTCCTCCGCC
GCGGACGTGCTGCTCGGCGAGCTCTAAGGAGGGAGG back to topprotein sequence of jgi.p|Nanoce1779_2|612534 >mRNA_11131-protein ID=mRNA_11131-protein|Name=jgi.p|Nanoce1779_2|612534|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MHVLSYAALALAACASQTLAFVPAGPLSGMASSSKSRLHATKMTIDVGSK
LPLTTTFQHLADGKPTDVPALELFAGKKIVLVGVPGALTPTCSNTHVPGY
IAKAADFKAKGVDDIIVLAVNDCFAMRAWEKTFETDKVKFYADGGASFTK
AAGLEFDTGDFGGLRMQRMSALVEDGVVKKIHLEGGGGLSSSAADVLLGE
L* back to topmRNA from alignment at scaffold_65:37867..40121+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11131 ID=mRNA_11131|Name=jgi.p|Nanoce1779_2|612534|organism=Nannochloropsis oceanica|type=mRNA|length=2255bp|location=Sequence derived from alignment at scaffold_65:37867..40121+ (Nannochloropsis oceanica)
CTCATTGAGTACCCTTAACTGTGAGCAAAATATAGAAACAACATCAATAA
AGAAGAAGAACAGCAATAACAAGAACAATCTTTTTTTTGTTTCGTCGGTG
GGGATGATATGCCCGCTATATCTTTCGTTTTACTTCTCCATCTATGCCAT
GCACTCTGATAAGATAGGTAACAGGACACGGGCGATGTCATGCATTTAAT
GTACTTGCGACTTGCGGTGAAGATAGATACCAGTCTCCATGCCTGCATGT
GGCTGTAACGGACATTTAAGGGTCGTCCTCCATCACTCAGATACACCACG
TTGCGTAGCACCAACCCAGTCACCTTGTTTCTCTAGTCCAGAAACCTGTT
CTTGCCGGGCGCTAGGTAACTCTGCCTAAGCACAGGACCAAGGCACATGC
ACCCATCAACAGTTGTACTATGTGTCTAGGCACGCAGGATCGACCTCCTC
TCCCCCGCCTACGTCTTCATATTTTGCAATTACACCTCGCAAAGCTCGCT
TTCGTTTTTTTCCGGGGCCTCGCCTGCTCCTTCATCCTCGTCTTTATCTC
CCAGTCAGAACACGCCCAAGCTCACTCAAAACTATTTCTCCACTAACATC
TCTCCCTCTCTGTCTTCGTTTTGATTACCTGCTGACACGTGAATCTCTTC
TCATTTACTCTCCAGCACATCATGCACGTACTTTCTTACGCCGCCTTGGC
CTTGGCTGCCTGTGCTTCCCAGACTCTTGCCTTTGTGCCCGCAGGACCGC
TGTCGGGAATGGCTTCGAGCAGCAAGAGGTATGTAAAGGGAAGGAGGAAG
GAAGGTAGGGGGGTAGGAAGGTGGGAAGGGGAGGGGGGGGAGGTTAGAGG
CGGATGAAATGAACGAGACGTGCCGGGATTTTGTGACTGAGTTCTGAAGC
AAGAAAATGTTGTAGGGTGGATGACTTTCCGCGTGCTTCTAAGCCTGCCT
ACTCGGTGTTAGGCTTACCCACCCCTCCTCCCGTTCCCTCCTCCCTCCGT
AGCCGCCTGCACGCCACCAAGATGACCATCGACGTCGGGAGCAAGCTACC
CCTCACCACCACCTTCCAGCACCTGGCTGACGGCAAGCCCACGGTATGCC
CCTTCATTCATCTCTCTCTCGCTTCCTTACTCCCCCCTGCCTTTGCACAT
ACATCCGAGGGAAATCTCGCGATCGACGTCATCGCGTATCCTCGTCACCC
TCCCTCCCTCTCCCCCCCTTTCCCTCCCCTGCCTCCCTCACTCAGGATGT
GCCCGCATTGGAACTTTTCGCAGGGAAGAAAATTGTGCTGGTCGGCGTCC
CCGGGGCTTTGACTCCCACCTGCTCGGTAGGGAAGGAGGCTGACGGGGAA
GGACGGAGGGAAGGGAAGGAGGATGAGGAATGCTTGATCCAGAGGTTTCC
ACTGTGATGCCCCTCTCCCATCGTACCCGTCTGGCCATACCAGTCATTCT
GTCAGCCATCTCCTACCACTCAGGAACAAGAAGAGGAAAAATTGTTACCT
TAACATCCCTCCCTTTCTTCCCACCCTCCCTCCCTCCCTCCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGAACACC
CACGTGCCGGGCTACATCGCCAAGGCCGCCGACTTCAAGGCCAAGGGCGT
GGATGACATCATCGTGCTGGCCGTCAACGATTGCTTCGCCATGCGCGCTT
GGGAGAAGACGTTCGAGACGGACAAGGTGCGTGCCCCTCCCTCCCTCCCT
CCCTCCCTCCTTCCCACCTTCCCTCCTTCCCCCCAGCGTTTGGTTGCCAT
GGCATCTGCCTCGTCGGATCCACCCTTACATTTCTCCAGATGCCGTTTCT
CACCCCTAAAACAAAATATCTGACCCCTTTCTATCCTTTTCCCCCTGCTC
TCCCTCCCTCCCTCCCTTCCTCCCTCCAGGTGAAGTTCTACGCGGACGGT
GGCGCCTCCTTTACCAAGGCTGCGGGCTTGGAGTTTGACACGGGCGATTT
CGGGGGCCTCCGTATGCAGCGAATGTCAGCTCTGGTACGTCCTCCATCCC
TTCAGCCCTCCCTTTGTTCCCTCCTTACTTACTGTCTTCATACCGACTGA
CTTATCTTCCCAATGTCCTTCCCTCCCTCCCTCCCTCCCTCCTCCTCTCC
CCTCAGGTGGAGGACGGCGTGGTGAAGAAGATTCACTTGGAGGGGGGGGG
CGGCCTCTCCTCCTCCGCCGCGGACGTGCTGCTCGGCGAGCTCTAAGGAG
GGAGG back to topCoding sequence (CDS) from alignment at scaffold_65:37867..40121+ >mRNA_11131 ID=mRNA_11131|Name=jgi.p|Nanoce1779_2|612534|organism=Nannochloropsis oceanica|type=CDS|length=3636bp|location=Sequence derived from alignment at scaffold_65:37867..40121+ (Nannochloropsis oceanica)
ATGCACGTACTTTCTTACGCCGCCTTGGCCTTGGCTGCCTGTGCTTCCCA
GACTCTTGCCTTTGTGCCCGCAGGACCGCTGTCGGGAATGGCTTCGAGCA
GCAAGAGCCGCCTGCACGCCACCAAGATGACCATCGACGTCGGGAGCAAG
CTACCCCTCACCACCACCTTCCAGCACCTGGCTGACGGCAAGCCCACGGA
TGTGCCCGCATTGGAACTTTTCGCAGGGAAGAAAATTGTGCTGGTCGGCG
TCCCCGGGGCTTTGACTCCCACCTGCTCGAACACCCACGTGCCGGGCTAC
ATCGCCAAGGCCGCCGACTTCAAGGCCAAGGGCGTGGATGACATCATCGT
GCTGGCCGTCAACGATTGCTTCGCCATGCGCGCTTGGGAGAAGACGTTCG
AGACGGACAAGGTGAAGTTCTACGCGGACGGTGGCGCCTCCTTTACCAAG
GCTGCGGGCTTGGAGTTTGACACGGGCGATTTCGGGGGCCTCCGTATGCA
GCGAATGTCAGCTCTGGTGGAGGACGGCGTGGTGAAGAAGATTCACTTGG
AGGGGGGGGGCGGCCTCTCCTCCTCCGCCGCGGACGTGCTGCTCGGCGAG
CTCTAAATGCACGTACTTTCTTACGCCGCCTTGGCCTTGGCTGCCTGTGC
TTCCCAGACTCTTGCCTTTGTGCCCGCAGGACCGCTGTCGGGAATGGCTT
CGAGCAGCAAGAGCCGCCTGCACGCCACCAAGATGACCATCGACGTCGGG
AGCAAGCTACCCCTCACCACCACCTTCCAGCACCTGGCTGACGGCAAGCC
CACGGATGTGCCCGCATTGGAACTTTTCGCAGGGAAGAAAATTGTGCTGG
TCGGCGTCCCCGGGGCTTTGACTCCCACCTGCTCGAACACCCACGTGCCG
GGCTACATCGCCAAGGCCGCCGACTTCAAGGCCAAGGGCGTGGATGACAT
CATCGTGCTGGCCGTCAACGATTGCTTCGCCATGCGCGCTTGGGAGAAGA
CGTTCGAGACGGACAAGGTGAAGTTCTACGCGGACGGTGGCGCCTCCTTT
ACCAAGGCTGCGGGCTTGGAGTTTGACACGGGCGATTTCGGGGGCCTCCG
TATGCAGCGAATGTCAGCTCTGGTGGAGGACGGCGTGGTGAAGAAGATTC
ACTTGGAGGGGGGGGGCGGCCTCTCCTCCTCCGCCGCGGACGTGCTGCTC
GGCGAGCTCTAAATGCACGTACTTTCTTACGCCGCCTTGGCCTTGGCTGC
CTGTGCTTCCCAGACTCTTGCCTTTGTGCCCGCAGGACCGCTGTCGGGAA
TGGCTTCGAGCAGCAAGAGCCGCCTGCACGCCACCAAGATGACCATCGAC
GTCGGGAGCAAGCTACCCCTCACCACCACCTTCCAGCACCTGGCTGACGG
CAAGCCCACGGATGTGCCCGCATTGGAACTTTTCGCAGGGAAGAAAATTG
TGCTGGTCGGCGTCCCCGGGGCTTTGACTCCCACCTGCTCGAACACCCAC
GTGCCGGGCTACATCGCCAAGGCCGCCGACTTCAAGGCCAAGGGCGTGGA
TGACATCATCGTGCTGGCCGTCAACGATTGCTTCGCCATGCGCGCTTGGG
AGAAGACGTTCGAGACGGACAAGGTGAAGTTCTACGCGGACGGTGGCGCC
TCCTTTACCAAGGCTGCGGGCTTGGAGTTTGACACGGGCGATTTCGGGGG
CCTCCGTATGCAGCGAATGTCAGCTCTGGTGGAGGACGGCGTGGTGAAGA
AGATTCACTTGGAGGGGGGGGGCGGCCTCTCCTCCTCCGCCGCGGACGTG
CTGCTCGGCGAGCTCTAAATGCACGTACTTTCTTACGCCGCCTTGGCCTT
GGCTGCCTGTGCTTCCCAGACTCTTGCCTTTGTGCCCGCAGGACCGCTGT
CGGGAATGGCTTCGAGCAGCAAGAGCCGCCTGCACGCCACCAAGATGACC
ATCGACGTCGGGAGCAAGCTACCCCTCACCACCACCTTCCAGCACCTGGC
TGACGGCAAGCCCACGGATGTGCCCGCATTGGAACTTTTCGCAGGGAAGA
AAATTGTGCTGGTCGGCGTCCCCGGGGCTTTGACTCCCACCTGCTCGAAC
ACCCACGTGCCGGGCTACATCGCCAAGGCCGCCGACTTCAAGGCCAAGGG
CGTGGATGACATCATCGTGCTGGCCGTCAACGATTGCTTCGCCATGCGCG
CTTGGGAGAAGACGTTCGAGACGGACAAGGTGAAGTTCTACGCGGACGGT
GGCGCCTCCTTTACCAAGGCTGCGGGCTTGGAGTTTGACACGGGCGATTT
CGGGGGCCTCCGTATGCAGCGAATGTCAGCTCTGGTGGAGGACGGCGTGG
TGAAGAAGATTCACTTGGAGGGGGGGGGCGGCCTCTCCTCCTCCGCCGCG
GACGTGCTGCTCGGCGAGCTCTAAATGCACGTACTTTCTTACGCCGCCTT
GGCCTTGGCTGCCTGTGCTTCCCAGACTCTTGCCTTTGTGCCCGCAGGAC
CGCTGTCGGGAATGGCTTCGAGCAGCAAGAGCCGCCTGCACGCCACCAAG
ATGACCATCGACGTCGGGAGCAAGCTACCCCTCACCACCACCTTCCAGCA
CCTGGCTGACGGCAAGCCCACGGATGTGCCCGCATTGGAACTTTTCGCAG
GGAAGAAAATTGTGCTGGTCGGCGTCCCCGGGGCTTTGACTCCCACCTGC
TCGAACACCCACGTGCCGGGCTACATCGCCAAGGCCGCCGACTTCAAGGC
CAAGGGCGTGGATGACATCATCGTGCTGGCCGTCAACGATTGCTTCGCCA
TGCGCGCTTGGGAGAAGACGTTCGAGACGGACAAGGTGAAGTTCTACGCG
GACGGTGGCGCCTCCTTTACCAAGGCTGCGGGCTTGGAGTTTGACACGGG
CGATTTCGGGGGCCTCCGTATGCAGCGAATGTCAGCTCTGGTGGAGGACG
GCGTGGTGAAGAAGATTCACTTGGAGGGGGGGGGCGGCCTCTCCTCCTCC
GCCGCGGACGTGCTGCTCGGCGAGCTCTAAATGCACGTACTTTCTTACGC
CGCCTTGGCCTTGGCTGCCTGTGCTTCCCAGACTCTTGCCTTTGTGCCCG
CAGGACCGCTGTCGGGAATGGCTTCGAGCAGCAAGAGCCGCCTGCACGCC
ACCAAGATGACCATCGACGTCGGGAGCAAGCTACCCCTCACCACCACCTT
CCAGCACCTGGCTGACGGCAAGCCCACGGATGTGCCCGCATTGGAACTTT
TCGCAGGGAAGAAAATTGTGCTGGTCGGCGTCCCCGGGGCTTTGACTCCC
ACCTGCTCGAACACCCACGTGCCGGGCTACATCGCCAAGGCCGCCGACTT
CAAGGCCAAGGGCGTGGATGACATCATCGTGCTGGCCGTCAACGATTGCT
TCGCCATGCGCGCTTGGGAGAAGACGTTCGAGACGGACAAGGTGAAGTTC
TACGCGGACGGTGGCGCCTCCTTTACCAAGGCTGCGGGCTTGGAGTTTGA
CACGGGCGATTTCGGGGGCCTCCGTATGCAGCGAATGTCAGCTCTGGTGG
AGGACGGCGTGGTGAAGAAGATTCACTTGGAGGGGGGGGGCGGCCTCTCC
TCCTCCGCCGCGGACGTGCTGCTCGGCGAGCTCTAA back to top
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