jgi.p|Nanoce1779_2|612508, mRNA_11128 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612508
Unique Name	mRNA_11128
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	880
Alignment location	scaffold_65:17452..19471 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612594
Track	FilteredModels2
ProteinId	612508

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_65	supercontig	scaffold_65:17452..19471 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612508	gene_11128	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612508	mRNA_11128-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11128	CDS_11128	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_65:17452..19471+
coding sequence from alignment at scaffold_65:17452..19471+

mRNA sequence

>mRNA_11128 ID=mRNA_11128|Name=jgi.p|Nanoce1779_2|612508|organism=Nannochloropsis oceanica|type=mRNA|length=880bp
AAAACATTAGCCAACCATGAGTTCAACGGGTGCGGGGTACGATGTCTCGC
CCACCACCTTCTCGCCCGACGGCCGCCTCTTCCAAGTGGAGTACGCGAGT
AAAGCGGTGGAGAACAGTGGCACGGCCATTGGGCTAAAGTGCAAGGACGG
CATTGTCCTGGCAGTGGAGAATCTGCTCTTGTCTAAGCTCCTGGTGGCCA
ACTCGAACCGACGCACCTTTGGGGTAGGCCCGCACGTCTCCATCGCCGTG
GCTGGCCTCGTTTCAGACGGCCGGCAAGTGGTAAACCGCGCCCGGGAAGA
GGCTGAGAACTACAAGGACAACTACGGCAGTGATATCCCCCCTTCAGTCC
TGGCCGATCGCCTGGCCCAGTTCGTCCACTTCTTCACCCTCAACTACTCC
CTGCGGCCGTTTGGAGCCTCCGTGCTCATCGCCGGTTATGACGCTTTCAT
GGAGGCTCTAGAGCTGCACGTCATCGAACCCTCAGGCGTGGCCTACAAAT
TCTTCGGTGCCGCCGTGGGGAAGGGCCGACAGGGAGCCAAGACCGAGATC
GAGAAACTGAAGCTTACCGAGACCACCTGCACCGATGCCATCAAGGAGAT
GGCGAAAATCCTCCACAAGCTGCATGACGAGAGCAAGGACAAACCATTCG
AGCTGGAGATGGCGTGGGTCACCGAGGCCAACGGATTTAAGGCCCAAACC
GTCCCCCGCGACGTTGTTGCGGCGGCTGAGAAGTGGGCCAAGGAGGCCAT
CGAGGCCGAGGATATGGACGAGAGTGATGATGAGGAGGGAGGGGCAGCAT
AAGGAATAAAAGAAAGGAGGAAGGGAAGAAGGGAAAGCTTTTCTATGGAA
TGGGAACAGAGAGGCGGGTGGATGTATTCA

protein sequence of jgi.p|Nanoce1779_2|612508

>mRNA_11128-protein ID=mRNA_11128-protein|Name=jgi.p|Nanoce1779_2|612508|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MSSTGAGYDVSPTTFSPDGRLFQVEYASKAVENSGTAIGLKCKDGIVLAV
ENLLLSKLLVANSNRRTFGVGPHVSIAVAGLVSDGRQVVNRAREEAENYK
DNYGSDIPPSVLADRLAQFVHFFTLNYSLRPFGASVLIAGYDAFMEALEL
HVIEPSGVAYKFFGAAVGKGRQGAKTEIEKLKLTETTCTDAIKEMAKILH
KLHDESKDKPFELEMAWVTEANGFKAQTVPRDVVAAAEKWAKEAIEAEDM
DESDDEEGGAA*

mRNA from alignment at scaffold_65:17452..19471+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11128 ID=mRNA_11128|Name=jgi.p|Nanoce1779_2|612508|organism=Nannochloropsis oceanica|type=mRNA|length=2020bp|location=Sequence derived from alignment at scaffold_65:17452..19471+ (Nannochloropsis oceanica)
AAAACATTAGCCAACCATGAGTTCAACGGGTGCGGGGTACGATGTCTCGC
CCACCACCTTCTCGCCCGACGGCCGCCTCTTCCAAGTGGAGTACGCGAGT
AAAGCGGTGGAGAACAGGTATGGAGGGGAGTGAGGGAAGGAGGGAGGGAG
GAGGAAGGGAGAGATGTGCCTCCAGCGGATATTTGCCGGAGAACAAATAA
GCGGGCGTTGTCTCCAGCTACTCATGTTACACTGGAGTAGAGGCTGGTGC
GTGTGTCCGCGGGCTCTGCTTGTGTGCTGGGCTTGGCCTTTCCTGCCTGC
TTCTTCTCATTTCTCCACTCGCACACGTCATTCCCATGCTCCTTTCCTTC
TTCTTCTCTCTCCCTCCCTCCAACCGCCCTCCTCCTCAGTGGCACGGCCA
TTGGGCTAAAGTGCAAGGACGGCATTGTCCTGGCAGTGGAGAATCTGCTC
TTGTCTAAGCTCCTGGTGGCCAACTCGAACCGACGCACCTTTGGGGTAGG
CCCGCACGTCTCCATCGCCGTGGCTGGTACGAGGAAGAGAGGGAGAGAGG
GAGGGAGGGAAAGGCTGGAGGGAGCACAACATCTCTATTTGGTACAACAG
CGCGCTGCGTCAGTGTCCTTACTTTTATCCACCTCGTCTTCCCTCTCTCC
CTCCTGCCCTCCGTCCAGGCCTCGTTTCAGACGGCCGGCAAGTGGTAAAC
CGCGCCCGGGAAGAGGCTGAGAACTACAAGGACAACTACGGCAGTGATAT
CCCCCCTTCAGGTACGTCCTCCCTGCCTCCCTCCCCTCCTCTACCCCTTT
ATTCGGCAGACAGTCACCTTCGCCGCATCTCGTTGCAATAAACTCCAGTA
GATAGACTGCCTTATCTCACTCACATGTTCATTCCAATTCATTCTTTCGG
CTCATTCCCCTACCTCCCACTCTTCTCTCAAAATACTGACTTCCCCCCCC
CCTTCCTCCCTCCCTCCCACCATTCCTAGTCCTGGCCGATCGCCTGGCCC
AGTTCGTCCACTTCTTCACCCTCAACTACTCCCTGCGGCCGTTTGGAGCC
TCCGTGCTCATCGCCGGTTATGACGCTTTCATGGAGGCTCTAGAGCTGCA
CGTCATCGAACCCTCAGGCGTGGCCTACGTAAGCGCTTCTCCTTCCCTCC
TTCCCTCCCTCCCTCCCTCGCACTCTCCTTCCCTCTCTTCCGTCTTTCTG
TTCGTCTTGTTAAGCCCGTCATTGGTCTGGAATCCACATATACCCACTTT
TGATAAATATATTTAAACCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCCTCCAGAAATTCTTCGGTGCCGCCGTGGGGAAGGGCCGACAGGGAGCC
AAGACCGAGATCGAGAAACTGAAGCTTACCGAGACCACCTGCACCGATGC
CATCAAGGAGATGGCGAAAATGTAAGAGAGCCCTCAATTCCTCCCTCCTT
TCCTCCCTCCCCTTCCTCCCTCCCTTTCCCCCTCCTCCTCACCATCATCG
TACTGGCCTCGCCGAGCCCGTCCTTTTGACACGCATATATATCCATTCTT
GCCCCTCCCTCCCTTCCTCCCCCCCTCCCTCCAGCCTCCACAAGCTGCAT
GACGAGAGCAAGGACAAACCATTCGAGCTGGAGATGGCGTGGGTCACCGA
GGCCAACGGATTTAAGGCCCAAACCGTCCCCCGCGACGTTGTGTAAGTCC
CCTCCTTCCTCCCCTTCCTTCCCTTCCTTTCTCCTTCCCTGCCTTTTCGG
TTGACATATGAATTAAATACGAAGAGAGGCAAGCACGAAGAGTTTCCAAT
CGCTCACACCTCTTTCCTTCGACTTTATCCCCCCTCTCCCTCCCCTCCCG
TCACTAGTGCGGCGGCTGAGAAGTGGGCCAAGGAGGCCATCGAGGCCGAG
GATATGGACGAGAGTGATGATGAGGAGGGAGGGGCAGCATAAGGAATAAA
AGAAAGGAGGAAGGGAAGAAGGGAAAGCTTTTCTATGGAATGGGAACAGA
GAGGCGGGTGGATGTATTCA

Coding sequence (CDS) from alignment at scaffold_65:17452..19471+

>mRNA_11128 ID=mRNA_11128|Name=jgi.p|Nanoce1779_2|612508|organism=Nannochloropsis oceanica|type=CDS|length=5502bp|location=Sequence derived from alignment at scaffold_65:17452..19471+ (Nannochloropsis oceanica)
ATGAGTTCAACGGGTGCGGGGTACGATGTCTCGCCCACCACCTTCTCGCC
CGACGGCCGCCTCTTCCAAGTGGAGTACGCGAGTAAAGCGGTGGAGAACA
GTGGCACGGCCATTGGGCTAAAGTGCAAGGACGGCATTGTCCTGGCAGTG
GAGAATCTGCTCTTGTCTAAGCTCCTGGTGGCCAACTCGAACCGACGCAC
CTTTGGGGTAGGCCCGCACGTCTCCATCGCCGTGGCTGGCCTCGTTTCAG
ACGGCCGGCAAGTGGTAAACCGCGCCCGGGAAGAGGCTGAGAACTACAAG
GACAACTACGGCAGTGATATCCCCCCTTCAGTCCTGGCCGATCGCCTGGC
CCAGTTCGTCCACTTCTTCACCCTCAACTACTCCCTGCGGCCGTTTGGAG
CCTCCGTGCTCATCGCCGGTTATGACGCTTTCATGGAGGCTCTAGAGCTG
CACGTCATCGAACCCTCAGGCGTGGCCTACAAATTCTTCGGTGCCGCCGT
GGGGAAGGGCCGACAGGGAGCCAAGACCGAGATCGAGAAACTGAAGCTTA
CCGAGACCACCTGCACCGATGCCATCAAGGAGATGGCGAAAATCCTCCAC
AAGCTGCATGACGAGAGCAAGGACAAACCATTCGAGCTGGAGATGGCGTG
GGTCACCGAGGCCAACGGATTTAAGGCCCAAACCGTCCCCCGCGACGTTG
TTGCGGCGGCTGAGAAGTGGGCCAAGGAGGCCATCGAGGCCGAGGATATG
GACGAGAGTGATGATGAGGAGGGAGGGGCAGCATAAATGAGTTCAACGGG
TGCGGGGTACGATGTCTCGCCCACCACCTTCTCGCCCGACGGCCGCCTCT
TCCAAGTGGAGTACGCGAGTAAAGCGGTGGAGAACAGTGGCACGGCCATT
GGGCTAAAGTGCAAGGACGGCATTGTCCTGGCAGTGGAGAATCTGCTCTT
GTCTAAGCTCCTGGTGGCCAACTCGAACCGACGCACCTTTGGGGTAGGCC
CGCACGTCTCCATCGCCGTGGCTGGCCTCGTTTCAGACGGCCGGCAAGTG
GTAAACCGCGCCCGGGAAGAGGCTGAGAACTACAAGGACAACTACGGCAG
TGATATCCCCCCTTCAGTCCTGGCCGATCGCCTGGCCCAGTTCGTCCACT
TCTTCACCCTCAACTACTCCCTGCGGCCGTTTGGAGCCTCCGTGCTCATC
GCCGGTTATGACGCTTTCATGGAGGCTCTAGAGCTGCACGTCATCGAACC
CTCAGGCGTGGCCTACAAATTCTTCGGTGCCGCCGTGGGGAAGGGCCGAC
AGGGAGCCAAGACCGAGATCGAGAAACTGAAGCTTACCGAGACCACCTGC
ACCGATGCCATCAAGGAGATGGCGAAAATCCTCCACAAGCTGCATGACGA
GAGCAAGGACAAACCATTCGAGCTGGAGATGGCGTGGGTCACCGAGGCCA
ACGGATTTAAGGCCCAAACCGTCCCCCGCGACGTTGTTGCGGCGGCTGAG
AAGTGGGCCAAGGAGGCCATCGAGGCCGAGGATATGGACGAGAGTGATGA
TGAGGAGGGAGGGGCAGCATAAATGAGTTCAACGGGTGCGGGGTACGATG
TCTCGCCCACCACCTTCTCGCCCGACGGCCGCCTCTTCCAAGTGGAGTAC
GCGAGTAAAGCGGTGGAGAACAGTGGCACGGCCATTGGGCTAAAGTGCAA
GGACGGCATTGTCCTGGCAGTGGAGAATCTGCTCTTGTCTAAGCTCCTGG
TGGCCAACTCGAACCGACGCACCTTTGGGGTAGGCCCGCACGTCTCCATC
GCCGTGGCTGGCCTCGTTTCAGACGGCCGGCAAGTGGTAAACCGCGCCCG
GGAAGAGGCTGAGAACTACAAGGACAACTACGGCAGTGATATCCCCCCTT
CAGTCCTGGCCGATCGCCTGGCCCAGTTCGTCCACTTCTTCACCCTCAAC
TACTCCCTGCGGCCGTTTGGAGCCTCCGTGCTCATCGCCGGTTATGACGC
TTTCATGGAGGCTCTAGAGCTGCACGTCATCGAACCCTCAGGCGTGGCCT
ACAAATTCTTCGGTGCCGCCGTGGGGAAGGGCCGACAGGGAGCCAAGACC
GAGATCGAGAAACTGAAGCTTACCGAGACCACCTGCACCGATGCCATCAA
GGAGATGGCGAAAATCCTCCACAAGCTGCATGACGAGAGCAAGGACAAAC
CATTCGAGCTGGAGATGGCGTGGGTCACCGAGGCCAACGGATTTAAGGCC
CAAACCGTCCCCCGCGACGTTGTTGCGGCGGCTGAGAAGTGGGCCAAGGA
GGCCATCGAGGCCGAGGATATGGACGAGAGTGATGATGAGGAGGGAGGGG
CAGCATAAATGAGTTCAACGGGTGCGGGGTACGATGTCTCGCCCACCACC
TTCTCGCCCGACGGCCGCCTCTTCCAAGTGGAGTACGCGAGTAAAGCGGT
GGAGAACAGTGGCACGGCCATTGGGCTAAAGTGCAAGGACGGCATTGTCC
TGGCAGTGGAGAATCTGCTCTTGTCTAAGCTCCTGGTGGCCAACTCGAAC
CGACGCACCTTTGGGGTAGGCCCGCACGTCTCCATCGCCGTGGCTGGCCT
CGTTTCAGACGGCCGGCAAGTGGTAAACCGCGCCCGGGAAGAGGCTGAGA
ACTACAAGGACAACTACGGCAGTGATATCCCCCCTTCAGTCCTGGCCGAT
CGCCTGGCCCAGTTCGTCCACTTCTTCACCCTCAACTACTCCCTGCGGCC
GTTTGGAGCCTCCGTGCTCATCGCCGGTTATGACGCTTTCATGGAGGCTC
TAGAGCTGCACGTCATCGAACCCTCAGGCGTGGCCTACAAATTCTTCGGT
GCCGCCGTGGGGAAGGGCCGACAGGGAGCCAAGACCGAGATCGAGAAACT
GAAGCTTACCGAGACCACCTGCACCGATGCCATCAAGGAGATGGCGAAAA
TCCTCCACAAGCTGCATGACGAGAGCAAGGACAAACCATTCGAGCTGGAG
ATGGCGTGGGTCACCGAGGCCAACGGATTTAAGGCCCAAACCGTCCCCCG
CGACGTTGTTGCGGCGGCTGAGAAGTGGGCCAAGGAGGCCATCGAGGCCG
AGGATATGGACGAGAGTGATGATGAGGAGGGAGGGGCAGCATAAATGAGT
TCAACGGGTGCGGGGTACGATGTCTCGCCCACCACCTTCTCGCCCGACGG
CCGCCTCTTCCAAGTGGAGTACGCGAGTAAAGCGGTGGAGAACAGTGGCA
CGGCCATTGGGCTAAAGTGCAAGGACGGCATTGTCCTGGCAGTGGAGAAT
CTGCTCTTGTCTAAGCTCCTGGTGGCCAACTCGAACCGACGCACCTTTGG
GGTAGGCCCGCACGTCTCCATCGCCGTGGCTGGCCTCGTTTCAGACGGCC
GGCAAGTGGTAAACCGCGCCCGGGAAGAGGCTGAGAACTACAAGGACAAC
TACGGCAGTGATATCCCCCCTTCAGTCCTGGCCGATCGCCTGGCCCAGTT
CGTCCACTTCTTCACCCTCAACTACTCCCTGCGGCCGTTTGGAGCCTCCG
TGCTCATCGCCGGTTATGACGCTTTCATGGAGGCTCTAGAGCTGCACGTC
ATCGAACCCTCAGGCGTGGCCTACAAATTCTTCGGTGCCGCCGTGGGGAA
GGGCCGACAGGGAGCCAAGACCGAGATCGAGAAACTGAAGCTTACCGAGA
CCACCTGCACCGATGCCATCAAGGAGATGGCGAAAATCCTCCACAAGCTG
CATGACGAGAGCAAGGACAAACCATTCGAGCTGGAGATGGCGTGGGTCAC
CGAGGCCAACGGATTTAAGGCCCAAACCGTCCCCCGCGACGTTGTTGCGG
CGGCTGAGAAGTGGGCCAAGGAGGCCATCGAGGCCGAGGATATGGACGAG
AGTGATGATGAGGAGGGAGGGGCAGCATAAATGAGTTCAACGGGTGCGGG
GTACGATGTCTCGCCCACCACCTTCTCGCCCGACGGCCGCCTCTTCCAAG
TGGAGTACGCGAGTAAAGCGGTGGAGAACAGTGGCACGGCCATTGGGCTA
AAGTGCAAGGACGGCATTGTCCTGGCAGTGGAGAATCTGCTCTTGTCTAA
GCTCCTGGTGGCCAACTCGAACCGACGCACCTTTGGGGTAGGCCCGCACG
TCTCCATCGCCGTGGCTGGCCTCGTTTCAGACGGCCGGCAAGTGGTAAAC
CGCGCCCGGGAAGAGGCTGAGAACTACAAGGACAACTACGGCAGTGATAT
CCCCCCTTCAGTCCTGGCCGATCGCCTGGCCCAGTTCGTCCACTTCTTCA
CCCTCAACTACTCCCTGCGGCCGTTTGGAGCCTCCGTGCTCATCGCCGGT
TATGACGCTTTCATGGAGGCTCTAGAGCTGCACGTCATCGAACCCTCAGG
CGTGGCCTACAAATTCTTCGGTGCCGCCGTGGGGAAGGGCCGACAGGGAG
CCAAGACCGAGATCGAGAAACTGAAGCTTACCGAGACCACCTGCACCGAT
GCCATCAAGGAGATGGCGAAAATCCTCCACAAGCTGCATGACGAGAGCAA
GGACAAACCATTCGAGCTGGAGATGGCGTGGGTCACCGAGGCCAACGGAT
TTAAGGCCCAAACCGTCCCCCGCGACGTTGTTGCGGCGGCTGAGAAGTGG
GCCAAGGAGGCCATCGAGGCCGAGGATATGGACGAGAGTGATGATGAGGA
GGGAGGGGCAGCATAAATGAGTTCAACGGGTGCGGGGTACGATGTCTCGC
CCACCACCTTCTCGCCCGACGGCCGCCTCTTCCAAGTGGAGTACGCGAGT
AAAGCGGTGGAGAACAGTGGCACGGCCATTGGGCTAAAGTGCAAGGACGG
CATTGTCCTGGCAGTGGAGAATCTGCTCTTGTCTAAGCTCCTGGTGGCCA
ACTCGAACCGACGCACCTTTGGGGTAGGCCCGCACGTCTCCATCGCCGTG
GCTGGCCTCGTTTCAGACGGCCGGCAAGTGGTAAACCGCGCCCGGGAAGA
GGCTGAGAACTACAAGGACAACTACGGCAGTGATATCCCCCCTTCAGTCC
TGGCCGATCGCCTGGCCCAGTTCGTCCACTTCTTCACCCTCAACTACTCC
CTGCGGCCGTTTGGAGCCTCCGTGCTCATCGCCGGTTATGACGCTTTCAT
GGAGGCTCTAGAGCTGCACGTCATCGAACCCTCAGGCGTGGCCTACAAAT
TCTTCGGTGCCGCCGTGGGGAAGGGCCGACAGGGAGCCAAGACCGAGATC
GAGAAACTGAAGCTTACCGAGACCACCTGCACCGATGCCATCAAGGAGAT
GGCGAAAATCCTCCACAAGCTGCATGACGAGAGCAAGGACAAACCATTCG
AGCTGGAGATGGCGTGGGTCACCGAGGCCAACGGATTTAAGGCCCAAACC
GTCCCCCGCGACGTTGTTGCGGCGGCTGAGAAGTGGGCCAAGGAGGCCAT
CGAGGCCGAGGATATGGACGAGAGTGATGATGAGGAGGGAGGGGCAGCAT
AA

Synonyms

Publications