jgi.p|Nanoce1779_2|612504, mRNA_11127 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612504
Unique Name	mRNA_11127
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	954
Alignment location	scaffold_65:14604..17029 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612590
Track	FilteredModels2
ProteinId	612504

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_65	supercontig	scaffold_65:14604..17029 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612504	gene_11127	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612504	mRNA_11127-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11127	CDS_11127	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_65:14604..17029+
coding sequence from alignment at scaffold_65:14604..17029+

mRNA sequence

>mRNA_11127 ID=mRNA_11127|Name=jgi.p|Nanoce1779_2|612504|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
ACAGGACTCTTTGTAAGACAGCCCACCCCCCTCGCTCGCCGCAGAACATC
ACGGGACGAACCGACGCGAGCGTGAAGAAAGTGCGCCTACCTACGGAGAA
AGAATGAGTACAAGCCATGCTGTTCCAGACTTCCTGCTGGAGGAGCTGGG
AAGTCAGGCGCCCGGCTTGGAGAGCGACGGAAGGCCGGAGCTCAACGACG
ACGTGGACCGACTCACGCGATGGTGGCTGCAGGAGGAGGCAGCCCCAGAA
TTACTGCCTTTCCAGACGGAGACCGTGCAAGACTTGCATGCCCTAGTGGA
GCAGCAGCAGGGTTTCGTGGACGAGTCGCGCAACACAGTGGAAGAGGCCA
GCTCTGCCCTACTCTATCAGATGGAGATCGACCGGGTTAAGTACGTGCTA
GCCCGATACCTCCGAGCTCGTCTTTGCAAACTCGAGAGACACATTTTGCA
TGTGGCCTTGGACCCAGACATGCGTCAACGCCTCTCTCCGTACGAGTTGC
GGTTCGCCGGTCAATACCTGGACCTGGTGGACAAGCACGCCCACGCCATG
GTCCTTGACCATATGCCAGAAGGCTTCCAGTCGCTCACACAGGAGGCCCA
CGGAGAGCGGCCGGTCGATGCGCCGGACCTCGATCGCTTCGTTTTCTGCC
GCGTCCGCCAAGATAGCTTCAACGTACAGGTGGACGACTCGGCCGACGCT
GGCTCGAACGTGGCGGGCATCCAGGATTTGATGGAAGGAGACGTGCATGT
GCTTAAATACAGGGTGGTAAGACCTTTGGTGGAGAGGGAGGCGGTGGAAC
TCATCTAACGTGCACAAAAATGAACAAATATAAAGAATTGAAAAGGAAGA
GAGAGAAAAGGAGGAAGAGAACGACTGAAGGTGGGCGATGTAGCTTGGGT
GAGGGAGGGAGGGAGGGAGGAACGCAAAGAACAAAGATTTGTATGTATGC
CGGT

protein sequence of jgi.p|Nanoce1779_2|612504

>mRNA_11127-protein ID=mRNA_11127-protein|Name=jgi.p|Nanoce1779_2|612504|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MSTSHAVPDFLLEELGSQAPGLESDGRPELNDDVDRLTRWWLQEEAAPEL
LPFQTETVQDLHALVEQQQGFVDESRNTVEEASSALLYQMEIDRVKYVLA
RYLRARLCKLERHILHVALDPDMRQRLSPYELRFAGQYLDLVDKHAHAMV
LDHMPEGFQSLTQEAHGERPVDAPDLDRFVFCRVRQDSFNVQVDDSADAG
SNVAGIQDLMEGDVHVLKYRVVRPLVEREAVELI*

mRNA from alignment at scaffold_65:14604..17029+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11127 ID=mRNA_11127|Name=jgi.p|Nanoce1779_2|612504|organism=Nannochloropsis oceanica|type=mRNA|length=2426bp|location=Sequence derived from alignment at scaffold_65:14604..17029+ (Nannochloropsis oceanica)
ACAGGACTCTTTGTAAGACAGCCCACCCCCCTCGCTCGCCGCAGAACATC
ACGGGACGAACCGACGCGAGCGTGAAGGTAAATCAGCGAAGGCCAAGCAA
GGCAGGGGGCTTGGACGATGCCACAATAAGCACCAAAAGCAATACACCCA
CAAGCCCCATGCACGTCTACTGCGAATTCGCTGGTAGAGAGCGAAGCTGT
CATTTCCGTCGGTCTGTGAAGCAAGCCATCATGCAGCTCCGGCTGCGGCC
GAAAAGCGATGAGCGCCTCGCATCTTCCTCACGGCTGCCCCCTCTCCGCT
CTTTCTCGATAAACACACAGAAAGTGCGCCTACCTACGGAGAAAGAATGA
GTACAAGCCATGCTGTTCCAGACTTCCTGCTGGAGGAGCTGGGAAGTCAG
GTATGTACCGTGGAGCTACCGATGCACCCTCCCCTCCCTCCCTCCCCTCC
TGCCCTGCCTCGTTTCACCCGTCTCCATGTTGTGGTGAGCCATACAGCAA
AGTCGCCTTTATCTGCTTCATCTTCCCCTTCTTTATAGTCTTAGTCTCCG
TGCCGGCTAGTCGAGATCCCTGCGAACATAGGTCTTACCCTGTCCCTCGG
CCGCATCCCACATTCCACCCCTCCGTCCCTCCCTTCCTCCCTCCTCAGGC
GCCCGGCTTGGAGAGCGACGGAAGGCCGGAGCTCAACGACGACGTGGACC
GACTCACGCGATGGTGGCTGCAGGAGGAGGCAGCCCCAGAATTACTGCCT
TTCCAGACGGAGACCGTGCAAGACTTGCATGCCCTAGTGGAGCAGCAGCA
GGTAGGGAGAGGGAGGGAAAGCGGGAAAGAGGGAGGGAAGGAGGAAAGGG
AGGGTGGGTGAATGCCAGCGATACTAGTCCGTTCATGCGAAACCGGAATG
GCCCTGTCTTACCCTCCCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCT
TCCCAGGGTTTCGTGGACGAGTCGCGCAACACAGTGGAAGAGGCCAGCTC
TGCCCTACTCTATCAGATGGAGATCGACCGGTACACCCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCATCAC
TCCCTCCCCTGCCTGCCTTTCTTTCCTTCATATCTCCTCTGACCCTCCCT
CCTCTCCCTCCCTCCCTCCATCTCCCCCCAAGGGTTAAGTACGTGCTAGC
CCGATACCTCCGAGCTCGTCTTTGCAAACTCGAGAGACACATTTTGCATG
TGGCCTTGGACCCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGAGTGTGCAGAGGATCAGAGAGAAAGACTTGAGATGACCATTCACAACG
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGTTCCTCCCAGACAT
GCGTCAACGCCTCTCTCCGTACGAGTTGCGGTTCGCCGGTCAATACCTGG
ACCTGGTGGTGAGGGAGGGAGGGAGAGAGGGAGAGAGGGAGGGAGGAAGG
GAGGAAGGGAGGAAGGGAGGGAGGGAGGGAGGATTTTTTGGATGATTGAC
CTGCTGATTGATGGATGGATGGATAGATGGAGCCTTTTTCCAAGTCATTC
TCTACATCAGCTTGAGCCTCATGCCATCATCCCTTCCTCCCTCCCTCCCT
CTCTCCCACGTCAGGACAAGCACGCCCACGCCATGGTCCTTGACCATATG
CCAGAAGGCTTCCAGTCGCTCACACAGGTAGTGAGGGGGGGAGGGAGAGA
GGGAGGGAGGGAAAAAGGAAAGAGGATGTACGACAGGAAAAAAGGCCTGA
TATTTACGCAACCGTCCTCCTCGCCCGCCGTCCCTCCTTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCGTCTGCA
GGAGGCCCACGGAGAGCGGCCGGTCGATGCGCCGGACCTCGATCGCTTCG
TTTTCTGCCGCGTCCGCCAAGATAGCTTCAACGTACAGGTAAGGAAGGAG
GGGAGGATGGGGAGAGGAAGCAATAGAAGGGGGTAAGGAGGGAAGGAGGG
AAGGAAGGAAGGAGGACACACGGGCATATGAATGGTCCTTGAATTTTCAT
CCTTGCTTCTTCCTCTCTCCCTCCCTTTGGCTTTCCCTCCATTCTCCTCA
GGTGGACGACTCGGCCGACGCTGGCTCGAACGTGGCGGGCATCCAGGATT
TGATGGAAGGAGACGTGCATGTGCTTAAATACAGGGTGGTAAGACCTTTG
GTGGAGAGGGAGGCGGTGGAACTCATCTAACGTGCACAAAAATGAACAAA
TATAAAGAATTGAAAAGGAAGAGAGAGAAAAGGAGGAAGAGAACGACTGA
AGGTGGGCGATGTAGCTTGGGTGAGGGAGGGAGGGAGGGAGGAACGCAAA
GAACAAAGATTTGTATGTATGCCGGT

Coding sequence (CDS) from alignment at scaffold_65:14604..17029+

>mRNA_11127 ID=mRNA_11127|Name=jgi.p|Nanoce1779_2|612504|organism=Nannochloropsis oceanica|type=CDS|length=5640bp|location=Sequence derived from alignment at scaffold_65:14604..17029+ (Nannochloropsis oceanica)
ATGAGTACAAGCCATGCTGTTCCAGACTTCCTGCTGGAGGAGCTGGGAAG
TCAGGCGCCCGGCTTGGAGAGCGACGGAAGGCCGGAGCTCAACGACGACG
TGGACCGACTCACGCGATGGTGGCTGCAGGAGGAGGCAGCCCCAGAATTA
CTGCCTTTCCAGACGGAGACCGTGCAAGACTTGCATGCCCTAGTGGAGCA
GCAGCAGGGTTTCGTGGACGAGTCGCGCAACACAGTGGAAGAGGCCAGCT
CTGCCCTACTCTATCAGATGGAGATCGACCGGGTTAAGTACGTGCTAGCC
CGATACCTCCGAGCTCGTCTTTGCAAACTCGAGAGACACATTTTGCATGT
GGCCTTGGACCCAGACATGCGTCAACGCCTCTCTCCGTACGAGTTGCGGT
TCGCCGGTCAATACCTGGACCTGGTGGACAAGCACGCCCACGCCATGGTC
CTTGACCATATGCCAGAAGGCTTCCAGTCGCTCACACAGGAGGCCCACGG
AGAGCGGCCGGTCGATGCGCCGGACCTCGATCGCTTCGTTTTCTGCCGCG
TCCGCCAAGATAGCTTCAACGTACAGGTGGACGACTCGGCCGACGCTGGC
TCGAACGTGGCGGGCATCCAGGATTTGATGGAAGGAGACGTGCATGTGCT
TAAATACAGGGTGGTAAGACCTTTGGTGGAGAGGGAGGCGGTGGAACTCA
TCTAAATGAGTACAAGCCATGCTGTTCCAGACTTCCTGCTGGAGGAGCTG
GGAAGTCAGGCGCCCGGCTTGGAGAGCGACGGAAGGCCGGAGCTCAACGA
CGACGTGGACCGACTCACGCGATGGTGGCTGCAGGAGGAGGCAGCCCCAG
AATTACTGCCTTTCCAGACGGAGACCGTGCAAGACTTGCATGCCCTAGTG
GAGCAGCAGCAGGGTTTCGTGGACGAGTCGCGCAACACAGTGGAAGAGGC
CAGCTCTGCCCTACTCTATCAGATGGAGATCGACCGGGTTAAGTACGTGC
TAGCCCGATACCTCCGAGCTCGTCTTTGCAAACTCGAGAGACACATTTTG
CATGTGGCCTTGGACCCAGACATGCGTCAACGCCTCTCTCCGTACGAGTT
GCGGTTCGCCGGTCAATACCTGGACCTGGTGGACAAGCACGCCCACGCCA
TGGTCCTTGACCATATGCCAGAAGGCTTCCAGTCGCTCACACAGGAGGCC
CACGGAGAGCGGCCGGTCGATGCGCCGGACCTCGATCGCTTCGTTTTCTG
CCGCGTCCGCCAAGATAGCTTCAACGTACAGGTGGACGACTCGGCCGACG
CTGGCTCGAACGTGGCGGGCATCCAGGATTTGATGGAAGGAGACGTGCAT
GTGCTTAAATACAGGGTGGTAAGACCTTTGGTGGAGAGGGAGGCGGTGGA
ACTCATCTAAATGAGTACAAGCCATGCTGTTCCAGACTTCCTGCTGGAGG
AGCTGGGAAGTCAGGCGCCCGGCTTGGAGAGCGACGGAAGGCCGGAGCTC
AACGACGACGTGGACCGACTCACGCGATGGTGGCTGCAGGAGGAGGCAGC
CCCAGAATTACTGCCTTTCCAGACGGAGACCGTGCAAGACTTGCATGCCC
TAGTGGAGCAGCAGCAGGGTTTCGTGGACGAGTCGCGCAACACAGTGGAA
GAGGCCAGCTCTGCCCTACTCTATCAGATGGAGATCGACCGGGTTAAGTA
CGTGCTAGCCCGATACCTCCGAGCTCGTCTTTGCAAACTCGAGAGACACA
TTTTGCATGTGGCCTTGGACCCAGACATGCGTCAACGCCTCTCTCCGTAC
GAGTTGCGGTTCGCCGGTCAATACCTGGACCTGGTGGACAAGCACGCCCA
CGCCATGGTCCTTGACCATATGCCAGAAGGCTTCCAGTCGCTCACACAGG
AGGCCCACGGAGAGCGGCCGGTCGATGCGCCGGACCTCGATCGCTTCGTT
TTCTGCCGCGTCCGCCAAGATAGCTTCAACGTACAGGTGGACGACTCGGC
CGACGCTGGCTCGAACGTGGCGGGCATCCAGGATTTGATGGAAGGAGACG
TGCATGTGCTTAAATACAGGGTGGTAAGACCTTTGGTGGAGAGGGAGGCG
GTGGAACTCATCTAAATGAGTACAAGCCATGCTGTTCCAGACTTCCTGCT
GGAGGAGCTGGGAAGTCAGGCGCCCGGCTTGGAGAGCGACGGAAGGCCGG
AGCTCAACGACGACGTGGACCGACTCACGCGATGGTGGCTGCAGGAGGAG
GCAGCCCCAGAATTACTGCCTTTCCAGACGGAGACCGTGCAAGACTTGCA
TGCCCTAGTGGAGCAGCAGCAGGGTTTCGTGGACGAGTCGCGCAACACAG
TGGAAGAGGCCAGCTCTGCCCTACTCTATCAGATGGAGATCGACCGGGTT
AAGTACGTGCTAGCCCGATACCTCCGAGCTCGTCTTTGCAAACTCGAGAG
ACACATTTTGCATGTGGCCTTGGACCCAGACATGCGTCAACGCCTCTCTC
CGTACGAGTTGCGGTTCGCCGGTCAATACCTGGACCTGGTGGACAAGCAC
GCCCACGCCATGGTCCTTGACCATATGCCAGAAGGCTTCCAGTCGCTCAC
ACAGGAGGCCCACGGAGAGCGGCCGGTCGATGCGCCGGACCTCGATCGCT
TCGTTTTCTGCCGCGTCCGCCAAGATAGCTTCAACGTACAGGTGGACGAC
TCGGCCGACGCTGGCTCGAACGTGGCGGGCATCCAGGATTTGATGGAAGG
AGACGTGCATGTGCTTAAATACAGGGTGGTAAGACCTTTGGTGGAGAGGG
AGGCGGTGGAACTCATCTAAATGAGTACAAGCCATGCTGTTCCAGACTTC
CTGCTGGAGGAGCTGGGAAGTCAGGCGCCCGGCTTGGAGAGCGACGGAAG
GCCGGAGCTCAACGACGACGTGGACCGACTCACGCGATGGTGGCTGCAGG
AGGAGGCAGCCCCAGAATTACTGCCTTTCCAGACGGAGACCGTGCAAGAC
TTGCATGCCCTAGTGGAGCAGCAGCAGGGTTTCGTGGACGAGTCGCGCAA
CACAGTGGAAGAGGCCAGCTCTGCCCTACTCTATCAGATGGAGATCGACC
GGGTTAAGTACGTGCTAGCCCGATACCTCCGAGCTCGTCTTTGCAAACTC
GAGAGACACATTTTGCATGTGGCCTTGGACCCAGACATGCGTCAACGCCT
CTCTCCGTACGAGTTGCGGTTCGCCGGTCAATACCTGGACCTGGTGGACA
AGCACGCCCACGCCATGGTCCTTGACCATATGCCAGAAGGCTTCCAGTCG
CTCACACAGGAGGCCCACGGAGAGCGGCCGGTCGATGCGCCGGACCTCGA
TCGCTTCGTTTTCTGCCGCGTCCGCCAAGATAGCTTCAACGTACAGGTGG
ACGACTCGGCCGACGCTGGCTCGAACGTGGCGGGCATCCAGGATTTGATG
GAAGGAGACGTGCATGTGCTTAAATACAGGGTGGTAAGACCTTTGGTGGA
GAGGGAGGCGGTGGAACTCATCTAAATGAGTACAAGCCATGCTGTTCCAG
ACTTCCTGCTGGAGGAGCTGGGAAGTCAGGCGCCCGGCTTGGAGAGCGAC
GGAAGGCCGGAGCTCAACGACGACGTGGACCGACTCACGCGATGGTGGCT
GCAGGAGGAGGCAGCCCCAGAATTACTGCCTTTCCAGACGGAGACCGTGC
AAGACTTGCATGCCCTAGTGGAGCAGCAGCAGGGTTTCGTGGACGAGTCG
CGCAACACAGTGGAAGAGGCCAGCTCTGCCCTACTCTATCAGATGGAGAT
CGACCGGGTTAAGTACGTGCTAGCCCGATACCTCCGAGCTCGTCTTTGCA
AACTCGAGAGACACATTTTGCATGTGGCCTTGGACCCAGACATGCGTCAA
CGCCTCTCTCCGTACGAGTTGCGGTTCGCCGGTCAATACCTGGACCTGGT
GGACAAGCACGCCCACGCCATGGTCCTTGACCATATGCCAGAAGGCTTCC
AGTCGCTCACACAGGAGGCCCACGGAGAGCGGCCGGTCGATGCGCCGGAC
CTCGATCGCTTCGTTTTCTGCCGCGTCCGCCAAGATAGCTTCAACGTACA
GGTGGACGACTCGGCCGACGCTGGCTCGAACGTGGCGGGCATCCAGGATT
TGATGGAAGGAGACGTGCATGTGCTTAAATACAGGGTGGTAAGACCTTTG
GTGGAGAGGGAGGCGGTGGAACTCATCTAAATGAGTACAAGCCATGCTGT
TCCAGACTTCCTGCTGGAGGAGCTGGGAAGTCAGGCGCCCGGCTTGGAGA
GCGACGGAAGGCCGGAGCTCAACGACGACGTGGACCGACTCACGCGATGG
TGGCTGCAGGAGGAGGCAGCCCCAGAATTACTGCCTTTCCAGACGGAGAC
CGTGCAAGACTTGCATGCCCTAGTGGAGCAGCAGCAGGGTTTCGTGGACG
AGTCGCGCAACACAGTGGAAGAGGCCAGCTCTGCCCTACTCTATCAGATG
GAGATCGACCGGGTTAAGTACGTGCTAGCCCGATACCTCCGAGCTCGTCT
TTGCAAACTCGAGAGACACATTTTGCATGTGGCCTTGGACCCAGACATGC
GTCAACGCCTCTCTCCGTACGAGTTGCGGTTCGCCGGTCAATACCTGGAC
CTGGTGGACAAGCACGCCCACGCCATGGTCCTTGACCATATGCCAGAAGG
CTTCCAGTCGCTCACACAGGAGGCCCACGGAGAGCGGCCGGTCGATGCGC
CGGACCTCGATCGCTTCGTTTTCTGCCGCGTCCGCCAAGATAGCTTCAAC
GTACAGGTGGACGACTCGGCCGACGCTGGCTCGAACGTGGCGGGCATCCA
GGATTTGATGGAAGGAGACGTGCATGTGCTTAAATACAGGGTGGTAAGAC
CTTTGGTGGAGAGGGAGGCGGTGGAACTCATCTAAATGAGTACAAGCCAT
GCTGTTCCAGACTTCCTGCTGGAGGAGCTGGGAAGTCAGGCGCCCGGCTT
GGAGAGCGACGGAAGGCCGGAGCTCAACGACGACGTGGACCGACTCACGC
GATGGTGGCTGCAGGAGGAGGCAGCCCCAGAATTACTGCCTTTCCAGACG
GAGACCGTGCAAGACTTGCATGCCCTAGTGGAGCAGCAGCAGGGTTTCGT
GGACGAGTCGCGCAACACAGTGGAAGAGGCCAGCTCTGCCCTACTCTATC
AGATGGAGATCGACCGGGTTAAGTACGTGCTAGCCCGATACCTCCGAGCT
CGTCTTTGCAAACTCGAGAGACACATTTTGCATGTGGCCTTGGACCCAGA
CATGCGTCAACGCCTCTCTCCGTACGAGTTGCGGTTCGCCGGTCAATACC
TGGACCTGGTGGACAAGCACGCCCACGCCATGGTCCTTGACCATATGCCA
GAAGGCTTCCAGTCGCTCACACAGGAGGCCCACGGAGAGCGGCCGGTCGA
TGCGCCGGACCTCGATCGCTTCGTTTTCTGCCGCGTCCGCCAAGATAGCT
TCAACGTACAGGTGGACGACTCGGCCGACGCTGGCTCGAACGTGGCGGGC
ATCCAGGATTTGATGGAAGGAGACGTGCATGTGCTTAAATACAGGGTGGT
AAGACCTTTGGTGGAGAGGGAGGCGGTGGAACTCATCTAA

Synonyms

Publications