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Properties
| Property Name | Value |
|---|
| TranscriptId | 612586 |
| Track | FilteredModels2 |
| ProteinId | 612500 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_65 | supercontig | scaffold_65:11242..13107 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11126 ID=mRNA_11126|Name=jgi.p|Nanoce1779_2|612500|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp
CAGTAGTTACTGCGGCCGGTATATGGGGAACAAGGATGCTATCGCGAATG
TCACACCCGATCCGGGGTCTACCAAGGAGACGTCGCAGATCATAGATGTC
AACTCTCCTTCCTCCCCCGTGCGCCCCTCCTCCTCTGCCCGCTTTCGAGG
AGCTGGGGGAGGAACAGGCGTGAGAGGATTGGTGCGAGATTCGAGCGTGA
GTGTTGGGCCTCGCGTACATTCCCTGAATTTCCTGTCTCCTCCCATGCCT
GCCAGTCCGCCGCCTGCTGCTGAGACCTCGAGCTACTACTCCAACCATTA
TAATCGCCGGTGTGATGCGTGGAGGGCCATTCGCTTGAAGACTCCGAAGG
AGATCTCCTGGCAGGCAAAGCTAGAATTTGCCTTGTTTAAGCAGGAGTGG
AGATGGATTGTGGTCGTCCTCCTGGCCGAATACTTCAATCTGGTGATGCA
CAATTTCGTCTACTACCTCGAGGGAGAGATATGGGGGGAGGCAGGGCCCC
CTCCGCCGTTGAAAGACTTGGGCATCATGCTCTTTGCGGGCGTCTTCCCT
CCCTCCGCCCAATGGGTCGTCAACCTCTCCCTCTACCTGTTGGTCGGCAT
GGTCCTGACCCTCTGCCTCGGCCGGCTCCTCTTGAACAACGTCCCCTGGG
GCGGGCCGCAAACGATGCTGGTCCAAGAGAGGGAGGACTGGGAGGAGGTC
AAGACATGCTCGATCCCCGTACCATTCGTCTACCTCTGCAAACGTGCCTG
CCAGGTCCTGTCCATCGCCTTAGTGCTCCGCGTCTTCTCCTACATGCTAA
CCCTAGAGCCCAATCCAGCGCCCTATTGCCACCCTCCGTACTGGGACCCG
CCCAATACCGTCGGGGAGATCATGGGCCGCGTGGAAATCACGGGGAGCTG
CGGGGACCTCCTCTTCTCGAGCCACACGCTGCACAGCATAGTGATGCTGC
TGACGGTCTTGCGCCACGCGCCCAGGTTGTACATCGTGTGCGGGATCAGT
GTCTGTTCCATGATACTGGTTATCATGGCCTTGCTGGCCTTCAAGAACCA
CTATTCGCACGACATCGTCACAGCCATCTACACTACCGTGCTGCTCTGGA
TGCTGATACCCGAGCCCACCGTGGCCGACTGCGATCTGTTGCACATCGAC
CTACCCCCGGGGGAGCTGTGGGGAGGGGGTACATAAGTACGATTATGTAG
GAGGGG back to topprotein sequence of jgi.p|Nanoce1779_2|612500 >mRNA_11126-protein ID=mRNA_11126-protein|Name=jgi.p|Nanoce1779_2|612500|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MGNKDAIANVTPDPGSTKETSQIIDVNSPSSPVRPSSSARFRGAGGGTGV
RGLVRDSSVSVGPRVHSLNFLSPPMPASPPPAAETSSYYSNHYNRRCDAW
RAIRLKTPKEISWQAKLEFALFKQEWRWIVVVLLAEYFNLVMHNFVYYLE
GEIWGEAGPPPPLKDLGIMLFAGVFPPSAQWVVNLSLYLLVGMVLTLCLG
RLLLNNVPWGGPQTMLVQEREDWEEVKTCSIPVPFVYLCKRACQVLSIAL
VLRVFSYMLTLEPNPAPYCHPPYWDPPNTVGEIMGRVEITGSCGDLLFSS
HTLHSIVMLLTVLRHAPRLYIVCGISVCSMILVIMALLAFKNHYSHDIVT
AIYTTVLLWMLIPEPTVADCDLLHIDLPPGELWGGGT* back to topmRNA from alignment at scaffold_65:11242..13107- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11126 ID=mRNA_11126|Name=jgi.p|Nanoce1779_2|612500|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp|location=Sequence derived from alignment at scaffold_65:11242..13107- (Nannochloropsis oceanica)
CAGTAGTTACTGCGGCCGGTATATGGGGAACAAGGATGCTATCGCGAATG
TCACACCCGATCCGGGGTCTACCAAGGAGACGTCGCAGATCATAGATGTC
AACTCTCCTTCCTCCCCCGTGCGCCCCTCCTCCTCTGCCCGCTTTCGAGG
AGCTGGGGGAGGAACAGGCGTGAGAGGATTGGTGCGAGATTCGAGCGTGA
GTGTTGGGCCTCGCGTACATTCCCTGAATTTCCTGTCTCCTCCCATGCCT
GCCAGTCCGCCGCCTGCTGCTGAGACCTCGAGCTACTACTCCAACCATTA
TAATCGCCGGTGTGATGCGTGGAGGGCCATTCGCTTGAAGACTCCGAAGG
AGGTAAATCAAATGAAAGATGGGAGGGGAAGGAAGGCAGAAGGAAAGGAG
CGAAGGACGGTGAAGGATTATTCCGATTTCCTGAATACTTCGATTGAACG
CTGGACATGGTCGACGACTTGAGGAAAGATAGGAGGAGGGGAGTGGAGAT
GGGTACGGAGGAAAGGAGGAAGAAGTCAGGATCTCACACATCTTCCATTC
TTTACGTTTCCATATACAAATCAAACGTTATTGTTTGGTAGATCTCCTGG
CAGGCAAAGCTAGAATTTGCCTTGTTTAAGCAGGAGTGGAGATGGATTGT
GGTACGTCTGGCTGGCCGGCTTGTGTCCGCGGAGTAGAGGGCATAACTCT
CTCCCTCTCTCCCTTCCTTCAGAACGATGCTTCCAAGCATATCACCACAA
ACAGAATAACTTCATTCTTAAATTGAGGCGGCGTAAGACACTCCCGCCCT
TTTTTTAAATCCGTCAAATCTTCCCCTCCCGCCCGCCCTTCCCTCCTCCC
TGCATCTCCGCTCCCTGCAGGTCGTCCTCCTGGCCGAATACTTCAATCTG
GTGATGCACAATTTCGTCTACTACCTCGAGGGAGAGATATGGGGGGAGGC
AGGGCCCCCTCCGCCGTTGAAAGACTTGGGCATCATGCTCTTTGCGGGCG
TCTTCCCTCCCTCCGCCCAATGGGTCGTCAACCTCTCCCTCTACCTGTTG
GTCGGCATGGTCCTGACCCTCTGCCTCGGCCGGCTCCTCTTGAACAACGT
CCCCTGGGGCGGGCCGCAAACGATGCTGGTCCAAGAGAGGGAGGACTGGG
AGGAGGTCAAGACATGCTCGATCCCCGTACCATTCGTCTACCTCTGCAAA
CGTGCCTGCCAGGTCCTGTCCATCGCCTTAGTGCTCCGCGTCTTCTCCTA
CATGCTAACCCTAGAGCCCAATCCAGCGCCCTATTGCCACCCTCCGTACT
GGGACCCGCCCAATACCGTCGGGGAGATCATGGGCCGCGTGGAAATCACG
GGGAGCTGCGGGGACCTCCTCTTCTCGAGCCACACGCTGCACAGCATAGT
GATGCTGCTGACGGTCTTGCGCCACGCGCCCAGGTTGTACATCGTGTGCG
GGATCAGTGTCTGTTCCATGATACTGGTTATCATGGCCTTGCTGGCCTTC
AAGAACCACTATTCGCACGACATCGTCACAGGTGAGCCAGCCAGTGCCCT
CTCTTTTCCTGCACCACTTTTTCCCTCCCTCCTTCCTTTCTTCCGGGTCT
CTTATTCCGTGGTTGAGAGGGTTTAGTAGGCCTTCTTAATGACATAATTT
ACCAATTCTCAGGTACTTCTTCTTGATTGTCCTTTTCTTTCTCCCTCCCT
CCCATCCGATGTCTATCCCTATCCCCATCGTAGCCATCTACACTACCGTG
CTGCTCTGGATGCTGATACCCGAGCCCACCGTGGCCGACTGCGATCTGTT
GCACATCGACCTACCCCCGGGGGAGCTGTGGGGAGGGGGTACATAAGTAC
GATTATGTAGGAGGGG back to topCoding sequence (CDS) from alignment at scaffold_65:11242..13107- >mRNA_11126 ID=mRNA_11126|Name=jgi.p|Nanoce1779_2|612500|organism=Nannochloropsis oceanica|type=CDS|length=4656bp|location=Sequence derived from alignment at scaffold_65:11242..13107- (Nannochloropsis oceanica)
CCATCTACACTACCGTGCTGCTCTGGATGCTGATACCCGAGCCCACCGTG
GCCGACTGCGATCTGTTGCACATCGACCTACCCCCGGGGGAGCTGTGGGG
AGGGGGTACATAAGTCGTCCTCCTGGCCGAATACTTCAATCTGGTGATGC
ACAATTTCGTCTACTACCTCGAGGGAGAGATATGGGGGGAGGCAGGGCCC
CCTCCGCCGTTGAAAGACTTGGGCATCATGCTCTTTGCGGGCGTCTTCCC
TCCCTCCGCCCAATGGGTCGTCAACCTCTCCCTCTACCTGTTGGTCGGCA
TGGTCCTGACCCTCTGCCTCGGCCGGCTCCTCTTGAACAACGTCCCCTGG
GGCGGGCCGCAAACGATGCTGGTCCAAGAGAGGGAGGACTGGGAGGAGGT
CAAGACATGCTCGATCCCCGTACCATTCGTCTACCTCTGCAAACGTGCCT
GCCAGGTCCTGTCCATCGCCTTAGTGCTCCGCGTCTTCTCCTACATGCTA
ACCCTAGAGCCCAATCCAGCGCCCTATTGCCACCCTCCGTACTGGGACCC
GCCCAATACCGTCGGGGAGATCATGGGCCGCGTGGAAATCACGGGGAGCT
GCGGGGACCTCCTCTTCTCGAGCCACACGCTGCACAGCATAGTGATGCTG
CTGACGGTCTTGCGCCACGCGCCCAGGTTGTACATCGTGTGCGGGATCAG
TGTCTGTTCCATGATACTGGTTATCATGGCCTTGCTGGCCTTCAAGAACC
ACTATTCGCACGACATCGTCACAGATCTCCTGGCAGGCAAAGCTAGAATT
TGCCTTGTTTAAGCAGGAGTGGAGATGGATTGTGATGGGGAACAAGGATG
CTATCGCGAATGTCACACCCGATCCGGGGTCTACCAAGGAGACGTCGCAG
ATCATAGATGTCAACTCTCCTTCCTCCCCCGTGCGCCCCTCCTCCTCTGC
CCGCTTTCGAGGAGCTGGGGGAGGAACAGGCGTGAGAGGATTGGTGCGAG
ATTCGAGCGTGAGTGTTGGGCCTCGCGTACATTCCCTGAATTTCCTGTCT
CCTCCCATGCCTGCCAGTCCGCCGCCTGCTGCTGAGACCTCGAGCTACTA
CTCCAACCATTATAATCGCCGGTGTGATGCGTGGAGGGCCATTCGCTTGA
AGACTCCGAAGGAGCCATCTACACTACCGTGCTGCTCTGGATGCTGATAC
CCGAGCCCACCGTGGCCGACTGCGATCTGTTGCACATCGACCTACCCCCG
GGGGAGCTGTGGGGAGGGGGTACATAAGTCGTCCTCCTGGCCGAATACTT
CAATCTGGTGATGCACAATTTCGTCTACTACCTCGAGGGAGAGATATGGG
GGGAGGCAGGGCCCCCTCCGCCGTTGAAAGACTTGGGCATCATGCTCTTT
GCGGGCGTCTTCCCTCCCTCCGCCCAATGGGTCGTCAACCTCTCCCTCTA
CCTGTTGGTCGGCATGGTCCTGACCCTCTGCCTCGGCCGGCTCCTCTTGA
ACAACGTCCCCTGGGGCGGGCCGCAAACGATGCTGGTCCAAGAGAGGGAG
GACTGGGAGGAGGTCAAGACATGCTCGATCCCCGTACCATTCGTCTACCT
CTGCAAACGTGCCTGCCAGGTCCTGTCCATCGCCTTAGTGCTCCGCGTCT
TCTCCTACATGCTAACCCTAGAGCCCAATCCAGCGCCCTATTGCCACCCT
CCGTACTGGGACCCGCCCAATACCGTCGGGGAGATCATGGGCCGCGTGGA
AATCACGGGGAGCTGCGGGGACCTCCTCTTCTCGAGCCACACGCTGCACA
GCATAGTGATGCTGCTGACGGTCTTGCGCCACGCGCCCAGGTTGTACATC
GTGTGCGGGATCAGTGTCTGTTCCATGATACTGGTTATCATGGCCTTGCT
GGCCTTCAAGAACCACTATTCGCACGACATCGTCACAGATCTCCTGGCAG
GCAAAGCTAGAATTTGCCTTGTTTAAGCAGGAGTGGAGATGGATTGTGAT
GGGGAACAAGGATGCTATCGCGAATGTCACACCCGATCCGGGGTCTACCA
AGGAGACGTCGCAGATCATAGATGTCAACTCTCCTTCCTCCCCCGTGCGC
CCCTCCTCCTCTGCCCGCTTTCGAGGAGCTGGGGGAGGAACAGGCGTGAG
AGGATTGGTGCGAGATTCGAGCGTGAGTGTTGGGCCTCGCGTACATTCCC
TGAATTTCCTGTCTCCTCCCATGCCTGCCAGTCCGCCGCCTGCTGCTGAG
ACCTCGAGCTACTACTCCAACCATTATAATCGCCGGTGTGATGCGTGGAG
GGCCATTCGCTTGAAGACTCCGAAGGAGCCATCTACACTACCGTGCTGCT
CTGGATGCTGATACCCGAGCCCACCGTGGCCGACTGCGATCTGTTGCACA
TCGACCTACCCCCGGGGGAGCTGTGGGGAGGGGGTACATAAGTCGTCCTC
CTGGCCGAATACTTCAATCTGGTGATGCACAATTTCGTCTACTACCTCGA
GGGAGAGATATGGGGGGAGGCAGGGCCCCCTCCGCCGTTGAAAGACTTGG
GCATCATGCTCTTTGCGGGCGTCTTCCCTCCCTCCGCCCAATGGGTCGTC
AACCTCTCCCTCTACCTGTTGGTCGGCATGGTCCTGACCCTCTGCCTCGG
CCGGCTCCTCTTGAACAACGTCCCCTGGGGCGGGCCGCAAACGATGCTGG
TCCAAGAGAGGGAGGACTGGGAGGAGGTCAAGACATGCTCGATCCCCGTA
CCATTCGTCTACCTCTGCAAACGTGCCTGCCAGGTCCTGTCCATCGCCTT
AGTGCTCCGCGTCTTCTCCTACATGCTAACCCTAGAGCCCAATCCAGCGC
CCTATTGCCACCCTCCGTACTGGGACCCGCCCAATACCGTCGGGGAGATC
ATGGGCCGCGTGGAAATCACGGGGAGCTGCGGGGACCTCCTCTTCTCGAG
CCACACGCTGCACAGCATAGTGATGCTGCTGACGGTCTTGCGCCACGCGC
CCAGGTTGTACATCGTGTGCGGGATCAGTGTCTGTTCCATGATACTGGTT
ATCATGGCCTTGCTGGCCTTCAAGAACCACTATTCGCACGACATCGTCAC
AGATCTCCTGGCAGGCAAAGCTAGAATTTGCCTTGTTTAAGCAGGAGTGG
AGATGGATTGTGATGGGGAACAAGGATGCTATCGCGAATGTCACACCCGA
TCCGGGGTCTACCAAGGAGACGTCGCAGATCATAGATGTCAACTCTCCTT
CCTCCCCCGTGCGCCCCTCCTCCTCTGCCCGCTTTCGAGGAGCTGGGGGA
GGAACAGGCGTGAGAGGATTGGTGCGAGATTCGAGCGTGAGTGTTGGGCC
TCGCGTACATTCCCTGAATTTCCTGTCTCCTCCCATGCCTGCCAGTCCGC
CGCCTGCTGCTGAGACCTCGAGCTACTACTCCAACCATTATAATCGCCGG
TGTGATGCGTGGAGGGCCATTCGCTTGAAGACTCCGAAGGAGCCATCTAC
ACTACCGTGCTGCTCTGGATGCTGATACCCGAGCCCACCGTGGCCGACTG
CGATCTGTTGCACATCGACCTACCCCCGGGGGAGCTGTGGGGAGGGGGTA
CATAAGTCGTCCTCCTGGCCGAATACTTCAATCTGGTGATGCACAATTTC
GTCTACTACCTCGAGGGAGAGATATGGGGGGAGGCAGGGCCCCCTCCGCC
GTTGAAAGACTTGGGCATCATGCTCTTTGCGGGCGTCTTCCCTCCCTCCG
CCCAATGGGTCGTCAACCTCTCCCTCTACCTGTTGGTCGGCATGGTCCTG
ACCCTCTGCCTCGGCCGGCTCCTCTTGAACAACGTCCCCTGGGGCGGGCC
GCAAACGATGCTGGTCCAAGAGAGGGAGGACTGGGAGGAGGTCAAGACAT
GCTCGATCCCCGTACCATTCGTCTACCTCTGCAAACGTGCCTGCCAGGTC
CTGTCCATCGCCTTAGTGCTCCGCGTCTTCTCCTACATGCTAACCCTAGA
GCCCAATCCAGCGCCCTATTGCCACCCTCCGTACTGGGACCCGCCCAATA
CCGTCGGGGAGATCATGGGCCGCGTGGAAATCACGGGGAGCTGCGGGGAC
CTCCTCTTCTCGAGCCACACGCTGCACAGCATAGTGATGCTGCTGACGGT
CTTGCGCCACGCGCCCAGGTTGTACATCGTGTGCGGGATCAGTGTCTGTT
CCATGATACTGGTTATCATGGCCTTGCTGGCCTTCAAGAACCACTATTCG
CACGACATCGTCACAGATCTCCTGGCAGGCAAAGCTAGAATTTGCCTTGT
TTAAGCAGGAGTGGAGATGGATTGTGATGGGGAACAAGGATGCTATCGCG
AATGTCACACCCGATCCGGGGTCTACCAAGGAGACGTCGCAGATCATAGA
TGTCAACTCTCCTTCCTCCCCCGTGCGCCCCTCCTCCTCTGCCCGCTTTC
GAGGAGCTGGGGGAGGAACAGGCGTGAGAGGATTGGTGCGAGATTCGAGC
GTGAGTGTTGGGCCTCGCGTACATTCCCTGAATTTCCTGTCTCCTCCCAT
GCCTGCCAGTCCGCCGCCTGCTGCTGAGACCTCGAGCTACTACTCCAACC
ATTATAATCGCCGGTGTGATGCGTGGAGGGCCATTCGCTTGAAGACTCCG
AAGGAG back to top
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