jgi.p|Nanoce1779_2|151388, mRNA_1112 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|151388
Unique NamemRNA_1112
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1212
Alignment locationscaffold_2:1250597..1251948 -

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Properties
Property NameValue
TranscriptId151474
TrackFilteredModels2
ProteinId151388
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1250597..1251948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|151388gene_1112Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|151388mRNA_1112-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1112CDS_1112Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1112 ID=mRNA_1112|Name=jgi.p|Nanoce1779_2|151388|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
CATCTCCTTCGGTATTAAACCACCAACGGCAATATCTCTACCACCGATCG
ACCACTTTCGTCTCGACGCCGATGGTGCCCTCAACCCGCTTGTTGTTGCG
CAGCGGTACGGCTTCCTTGTGCCGGCTGAATTCGTTGCAGCAGGAAATGG
CAATCGAATATTCACTCTTTCACGTACTTCCCAATTTTACGCCCAACATC
ACATAGGCCACGCCATCCTGGACGCCGCTCACCGTGCATTGCAAGGCACC
TCTTTTACCCGCCCCTCGCTCTTTGGCCTGGCTACCGGCATGTCAGGTCT
TAGCGCCACCGCTTCGACCTCATCGTGCTTCCCTTCTACCACCTCCCTCC
CGCCCTGCACCCGCGTGATCCCCGTCCCCATTCTCAGCGACAATTTTGCT
TACCTCATCATCGACCCACAAAGCGGCAAGGCCGCATGTGTGGACCCGGC
CGAACCTGAAAAGGTCCTCGCGGCCGCCAAACGGGAAGGCATCCAGCTCT
CCGCCCTCCTCTGCACGCACAAGCATTGGGACCACTCGGGAGGGAACGAG
GAAATGGCTCGTTTGATTCCAGGCTTGGACGTCGTGACGACGGAATTCGA
GGATATTCCCGCGGCGACTGTGCGTTTGGGAGATGATGATGTGTATACCT
TGGGTTCACTAAGCATCCGAGCGCTTCATACTCCCTGTCACACCAAGGGG
CACGTCCTCTTCCTCGTCACCCCGCAGGACGAGACAGAGATACGAGAGGC
GAAAACAGCCCCTGTATTGTTCTCGGGGGACACGCTGTTTGTCGGTGGAT
GTGGGCGTTTTTTTGAGGGGGATGGGCAACAGATGGTGGAGGCTTTGATG
GGCCGCGTGGCCAAGCTCCCGCCGCAGACGCTTGTGTATTGCGGACACGA
ATACACACAGGCCAACCTAGCTTTCGCTCTCTCCGTCGAACCTGACAACG
CCGCACTCCAAGCAAAGGCTGCCTGGGCCAGCTCGATACTGCAGCAAGGG
GGTTTCACAGTCCCTTCCACCGTTGGGAGCGAGTTGGACACCAATCCATT
TATGAGGGTGGCGCATGAGGGGGTCATCAAGGCAGCGAGGGAGAGGGGGG
GGGCGAAGGGGGGAAATCCGGCAGAGGTGATGACGGCGTTGCGGGAAATG
AAAAATAATTTCAAAGGCTAGAGGGAGGAGGGAATGAAAGGGTGAAACAG
GATGCTTTCGTG
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protein sequence of jgi.p|Nanoce1779_2|151388

>mRNA_1112-protein ID=mRNA_1112-protein|Name=jgi.p|Nanoce1779_2|151388|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MSGLSATASTSSCFPSTTSLPPCTRVIPVPILSDNFAYLIIDPQSGKAAC
VDPAEPEKVLAAAKREGIQLSALLCTHKHWDHSGGNEEMARLIPGLDVVT
TEFEDIPAATVRLGDDDVYTLGSLSIRALHTPCHTKGHVLFLVTPQDETE
IREAKTAPVLFSGDTLFVGGCGRFFEGDGQQMVEALMGRVAKLPPQTLVY
CGHEYTQANLAFALSVEPDNAALQAKAAWASSILQQGGFTVPSTVGSELD
TNPFMRVAHEGVIKAARERGGAKGGNPAEVMTALREMKNNFKG*
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mRNA from alignment at scaffold_2:1250597..1251948-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1112 ID=mRNA_1112|Name=jgi.p|Nanoce1779_2|151388|organism=Nannochloropsis oceanica|type=mRNA|length=1352bp|location=Sequence derived from alignment at scaffold_2:1250597..1251948- (Nannochloropsis oceanica)
CATCTCCTTCGGTATTAAACCACCAACGGCAATATCTCTACCACCGATCG
ACCACTTTCGTCTCGACGCCGATGGTGCCCTCAACCCGCTTGTTGTTGCG
CAGCGGTACGGCTTCCTTGTGCCGGCTGAATTCGTTGCAGCAGGAAATGG
CAATCGAATATTCACTCTTTCACGTACTTCCCAATTTTACGCCCAACATC
ACATAGGCCACGCCATCCTGGACGCCGCTCACCGTGCATTGCAAGGCACC
TCTTTTACCCGCCCCTCGCTCTTTGGCCTGGCTACCGGCATGTCAGGTCT
TAGCGCCACCGCTTCGACCTCATCGTGCTTCCCTTCTACCACCTCCCTCC
CGCCCTGCACCCGCGTGATCCCCGTCCCCATTCTCAGCGACAATTTTGCT
TACCTCATCATCGACCCACAAAGCGGCAAGGCCGCATGTGTGGACCCGGC
CGAACCTGAAAAGGTCCTCGCGGCCGCCAAACGGGAAGGCATCCAGCTCT
CCGCCCTCCTCTGCACGCACAAGCATTGGGACCACTCGGGAGGGAACGAG
GAAATGGCTCGTTTGATTCCAGGCTTGGACGTCGTGACGACGGAATTCGA
GGATATTCCCGCGGCGACTGTGCGTTTGGGAGATGATGATGTGTATACCT
TGGGTTCACTAAGCATCCGAGCGCTTCATACTCCCTGTCACACCAAGGGG
CACGTCCTCTTCCTCGTCACCCCGCAGGACGAGACAGAGATACGAGAGGC
GAAAACAGCCCCTGTATTGTTCTCGGGGGACACGCTGTTTGTCGGTGGAT
GTGGGCGTTTTTTTGAGGGGGATGGGCAACAGATGGTGGAGGCTTTGATG
GGCCGCGTGGCCAAGCTCCCGCCGCAGACGCTTGTGTATTGCGGGTAATT
AATTCTTCTCTTACTTATTCCCTGTCTTTATGTCTCTTTAATAGAATGGG
AAGTGATCAATAGTATGGCTCAGAGTCATGTGTATCTCATAGTCACCTCC
CTTCCTCCCTTCCCCCTTCATCTCCCCTCTGCAGACACGAATACACACAG
GCCAACCTAGCTTTCGCTCTCTCCGTCGAACCTGACAACGCCGCACTCCA
AGCAAAGGCTGCCTGGGCCAGCTCGATACTGCAGCAAGGGGGTTTCACAG
TCCCTTCCACCGTTGGGAGCGAGTTGGACACCAATCCATTTATGAGGGTG
GCGCATGAGGGGGTCATCAAGGCAGCGAGGGAGAGGGGGGGGGCGAAGGG
GGGAAATCCGGCAGAGGTGATGACGGCGTTGCGGGAAATGAAAAATAATT
TCAAAGGCTAGAGGGAGGAGGGAATGAAAGGGTGAAACAGGATGCTTTCG
TG
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Coding sequence (CDS) from alignment at scaffold_2:1250597..1251948-

>mRNA_1112 ID=mRNA_1112|Name=jgi.p|Nanoce1779_2|151388|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_2:1250597..1251948- (Nannochloropsis oceanica)
ACACGAATACACACAGGCCAACCTAGCTTTCGCTCTCTCCGTCGAACCTG
ACAACGCCGCACTCCAAGCAAAGGCTGCCTGGGCCAGCTCGATACTGCAG
CAAGGGGGTTTCACAGTCCCTTCCACCGTTGGGAGCGAGTTGGACACCAA
TCCATTTATGAGGGTGGCGCATGAGGGGGTCATCAAGGCAGCGAGGGAGA
GGGGGGGGGCGAAGGGGGGAAATCCGGCAGAGGTGATGACGGCGTTGCGG
GAAATGAAAAATAATTTCAAAGGCTAGATGTCAGGTCTTAGCGCCACCGC
TTCGACCTCATCGTGCTTCCCTTCTACCACCTCCCTCCCGCCCTGCACCC
GCGTGATCCCCGTCCCCATTCTCAGCGACAATTTTGCTTACCTCATCATC
GACCCACAAAGCGGCAAGGCCGCATGTGTGGACCCGGCCGAACCTGAAAA
GGTCCTCGCGGCCGCCAAACGGGAAGGCATCCAGCTCTCCGCCCTCCTCT
GCACGCACAAGCATTGGGACCACTCGGGAGGGAACGAGGAAATGGCTCGT
TTGATTCCAGGCTTGGACGTCGTGACGACGGAATTCGAGGATATTCCCGC
GGCGACTGTGCGTTTGGGAGATGATGATGTGTATACCTTGGGTTCACTAA
GCATCCGAGCGCTTCATACTCCCTGTCACACCAAGGGGCACGTCCTCTTC
CTCGTCACCCCGCAGGACGAGACAGAGATACGAGAGGCGAAAACAGCCCC
TGTATTGTTCTCGGGGGACACGCTGTTTGTCGGTGGATGTGGGCGTTTTT
TTGAGGGGGATGGGCAACAGATGGTGGAGGCTTTGATGGGCCGCGTGGCC
AAGCTCCCGCCGCAGACGCTTGTGTATTGCGGACACGAATACACACAGGC
CAACCTAGCTTTCGCTCTCTCCGTCGAACCTGACAACGCCGCACTCCAAG
CAAAGGCTGCCTGGGCCAGCTCGATACTGCAGCAAGGGGGTTTCACAGTC
CCTTCCACCGTTGGGAGCGAGTTGGACACCAATCCATTTATGAGGGTGGC
GCATGAGGGGGTCATCAAGGCAGCGAGGGAGAGGGGGGGGGCGAAGGGGG
GAAATCCGGCAGAGGTGATGACGGCGTTGCGGGAAATGAAAAATAATTTC
AAAGGCTAGATGTCAGGTCTTAGCGCCACCGCTTCGACCTCATCGTGCTT
CCCTTCTACCACCTCCCTCCCGCCCTGCACCCGCGTGATCCCCGTCCCCA
TTCTCAGCGACAATTTTGCTTACCTCATCATCGACCCACAAAGCGGCAAG
GCCGCATGTGTGGACCCGGCCGAACCTGAAAAGGTCCTCGCGGCCGCCAA
ACGGGAAGGCATCCAGCTCTCCGCCCTCCTCTGCACGCACAAGCATTGGG
ACCACTCGGGAGGGAACGAGGAAATGGCTCGTTTGATTCCAGGCTTGGAC
GTCGTGACGACGGAATTCGAGGATATTCCCGCGGCGACTGTGCGTTTGGG
AGATGATGATGTGTATACCTTGGGTTCACTAAGCATCCGAGCGCTTCATA
CTCCCTGTCACACCAAGGGGCACGTCCTCTTCCTCGTCACCCCGCAGGAC
GAGACAGAGATACGAGAGGCGAAAACAGCCCCTGTATTGTTCTCGGGGGA
CACGCTGTTTGTCGGTGGATGTGGGCGTTTTTTTGAGGGGGATGGGCAAC
AGATGGTGGAGGCTTTGATGGGCCGCGTGGCCAAGCTCCCGCCGCAGACG
CTTGTGTATTGCGG
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Synonyms
Publications