jgi.p|Nanoce1779_2|575358, mRNA_1111 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575358
Unique NamemRNA_1111
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length435
Alignment locationscaffold_2:1250139..1250573 -

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Properties
Property NameValue
TranscriptId575444
TrackFilteredModels2
ProteinId575358
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1250139..1250573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575358gene_1111Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575358mRNA_1111-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1111CDS_1111Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1111 ID=mRNA_1111|Name=jgi.p|Nanoce1779_2|575358|organism=Nannochloropsis oceanica|type=mRNA|length=435bp
TGATGGTTTCGGTGGTCGATGTTTCTTTTTTCTCCTTTTTCTATGTTCTG
TATCACAATCTATATGTTTTTGTCCAGTTTCTCAACTTCTCCCCTCCTTT
GTGTTTTCCTCTACCCTTTCTTCACATTCTCCTCTTTCACCACTGCATCT
TCTTCGTGGCCTTCGCCTATGATGCAGCCCGTGCTTCGCAGGCTTGCTCA
TTGCTTGTTCCTCTGCCTTCTTCTTTATCATATTCGGAACGTCCTTTCTT
TGTATGTATATACCCCTCTTTTTCAATCAAACTACTCTAGCGAAAACTAG
CTACTACACACCCGTAGACATATGTACGTCTCTCTGTCTCCTCACATATG
AACATCCACCCCTCCCTCCCTCCCTCCCTCATGGCCCCAATGCCCTCAAC
AATGACAGCACAGCATGCAGGCTTCTCAACGAATC
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protein sequence of jgi.p|Nanoce1779_2|575358

>mRNA_1111-protein ID=mRNA_1111-protein|Name=jgi.p|Nanoce1779_2|575358|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MVSVVDVSFFSFFYVLYHNLYVFVQFLNFSPPLCFPLPFLHILLFHHCIF
FVAFAYDAARASQACSLLVPLPSSLSYSERPFFVCIYPSFSIKLL*
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mRNA from alignment at scaffold_2:1250139..1250573-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1111 ID=mRNA_1111|Name=jgi.p|Nanoce1779_2|575358|organism=Nannochloropsis oceanica|type=mRNA|length=435bp|location=Sequence derived from alignment at scaffold_2:1250139..1250573- (Nannochloropsis oceanica)
TGATGGTTTCGGTGGTCGATGTTTCTTTTTTCTCCTTTTTCTATGTTCTG
TATCACAATCTATATGTTTTTGTCCAGTTTCTCAACTTCTCCCCTCCTTT
GTGTTTTCCTCTACCCTTTCTTCACATTCTCCTCTTTCACCACTGCATCT
TCTTCGTGGCCTTCGCCTATGATGCAGCCCGTGCTTCGCAGGCTTGCTCA
TTGCTTGTTCCTCTGCCTTCTTCTTTATCATATTCGGAACGTCCTTTCTT
TGTATGTATATACCCCTCTTTTTCAATCAAACTACTCTAGCGAAAACTAG
CTACTACACACCCGTAGACATATGTACGTCTCTCTGTCTCCTCACATATG
AACATCCACCCCTCCCTCCCTCCCTCCCTCATGGCCCCAATGCCCTCAAC
AATGACAGCACAGCATGCAGGCTTCTCAACGAATC
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Coding sequence (CDS) from alignment at scaffold_2:1250139..1250573-

>mRNA_1111 ID=mRNA_1111|Name=jgi.p|Nanoce1779_2|575358|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at scaffold_2:1250139..1250573- (Nannochloropsis oceanica)
ATGGTTTCGGTGGTCGATGTTTCTTTTTTCTCCTTTTTCTATGTTCTGTA
TCACAATCTATATGTTTTTGTCCAGTTTCTCAACTTCTCCCCTCCTTTGT
GTTTTCCTCTACCCTTTCTTCACATTCTCCTCTTTCACCACTGCATCTTC
TTCGTGGCCTTCGCCTATGATGCAGCCCGTGCTTCGCAGGCTTGCTCATT
GCTTGTTCCTCTGCCTTCTTCTTTATCATATTCGGAACGTCCTTTCTTTG
TATGTATATACCCCTCTTTTTCAATCAAACTACTCTAG
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Synonyms
Publications