jgi.p|Nanoce1779_2|151314, mRNA_1109 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|151314
Unique Name	mRNA_1109
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1789
Alignment location	scaffold_2:1243226..1245183 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	151400
Track	FilteredModels2
ProteinId	151314

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1243226..1245183 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|151314	gene_1109	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|151314	mRNA_1109-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1109	CDS_1109	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1243226..1245183+
coding sequence from alignment at scaffold_2:1243226..1245183+

mRNA sequence

>mRNA_1109 ID=mRNA_1109|Name=jgi.p|Nanoce1779_2|151314|organism=Nannochloropsis oceanica|type=mRNA|length=1789bp
ATGTCAGAATGGGGATGGATGGGAAAGCGATACGTCGAGCTGAGGTTTGA
TGTCTTTCCTCTGGTGCGGTGCGTGAAAAAAAAGGGAGATTTTAAGTGCC
CATATGAGCGATTATCTCAGATGAATGACGATTGATGCTTGAGGCTGAGG
GCCTCGTTCCTTTCCTCATTTATGTCCGTCCACTCTCTCCACTTAACACC
TACATTACAGGACGCATTCTGACGACCTGGCTTCGTTGTACTCGTCTGCG
TTCGAAATCCACCCTCCTCATAATTTCAGCGTTGTCGTTGCGTTTCTTCA
TTCCTGAAGCGCGACAGTAACCCACAGGGAGCACAAACGTGCCTTGCGTC
GCTCTGGCACTGCGAAGACTTCGCAGCAATGGACATGCTTCTGACTTTCC
TCCGTCAAGACGCCGACACATCCAAGGGGGAGAGTGCCAGTGACAAGGCC
CTCAGACAGCAACTCCAGGATGCTCTCGACCTCATCTCTTCCCTTGTCAC
CCTCTTCCCCCTCGAGCATCTCGCCCTAACCTTCAATGGTGGCAAAGATG
CCTGCGTGGTATTCTACCTCGTGCGCGCTGCCTTAGCCCTGCGAAGGGTA
ACGACCAAAGAGGAGCTCGCCCGTGTCAAGGTTCTGTATTTTGCACCCAA
GCATGGCGAATTTCCGGAAGTGACTTCGTTTATGGAGGAGGTTGTACGCA
CGTTTGACTTCACATATACGGTGTATCCACCGGGATGTTCCTACAAGGAG
GGAATGCGGGATCTGGTGGAGAGGGAGGGCTTAAAAGCGGTCTTTCTGGG
GGTGCGGAGTGGAGATCCTTATTCATTGGAAAGCGAACACCTCCAACCCT
CGTCCCCAGGCTGGCCTGTCTTCCTCCGGGTCAACCCCATCCTCAAGTGG
GATTACGGCCAAGTCTGGCGGTTTCTGCGTCGATTTAATCTTCCTTATTG
CTCTCTGTATGATGAGGGATATACGTCTTTAGGCGATATTAGGACGACAA
TACGGAATCCCGCTCTGTTGAAAGAGGGAGGGAAGGAGGGCGGGAGGGAG
GGGAGCGAGGAGAAGGAGAGGTATAGACCGGCGCATGAGTTGGTGGACTG
GACGCTGGAAAGGGCAAATCGGATCGTGGCAGAGGAGGGGGAGGGGGAGG
GGGAGGGAGGGAAGAAGAAAGAGACGAAGACGGACATGGAAGCCGGTGGA
AACAGAAGAAGTGTGCCGACGACCCCCCCCACGACGATGGCGACGACGAC
TGTCGCGGGCGATGAAGGAACGGGGAGCGGGAGATGGAACGAAAACGTAT
CTTCGAGCTCTTTGCCAAGGCATGTATCTTCGGGCTCTTTGCCAAGGCAT
GTATCCAGGGGAAATATGGCGAACGAGGACGGGGAAGGAGAAGGGGCTGG
CCGATTGCAAGGTCGGCTGCAGCAGCAGCAGCAGCAGCAAGTCTCCCTGC
CCCCGCCACGACACATGCGAAGGCTCAGCAGCTTTGCCGAGCGCCTGCCC
GTTGCCTTGCTATGTGTAGGAGACTTCTTATCAGTGCGTGTGCGTAATGT
TTCCTTTCCCCTCTCCATTCCTCCCTCGTCTCCTCTCTCCTCCCATTTCT
CCTTTCATCGTGGACTTGCTTATCGACTTTTCTATCAAAGCTCTGCTCCT
CATCCTTTCCTCCCCGCTCTCTCTTTCCTCCACTAGGACTCGGCGCCCAT
GGCGTTGGCACACGAATTGAGAGAGCTCCGCTGCCGGGTCGCGCCTATAA
TCATCACACCTCGCCCATCTCTTTCCAAGGAGGCAGGGA

protein sequence of jgi.p|Nanoce1779_2|151314

>mRNA_1109-protein ID=mRNA_1109-protein|Name=jgi.p|Nanoce1779_2|151314|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MDMLLTFLRQDADTSKGESASDKALRQQLQDALDLISSLVTLFPLEHLAL
TFNGGKDACVVFYLVRAALALRRVTTKEELARVKVLYFAPKHGEFPEVTS
FMEEVVRTFDFTYTVYPPGCSYKEGMRDLVEREGLKAVFLGVRSGDPYSL
ESEHLQPSSPGWPVFLRVNPILKWDYGQVWRFLRRFNLPYCSLYDEGYTS
LGDIRTTIRNPALLKEGGKEGGREGSEEKERYRPAHELVDWTLERANRIV
AEEGEGEGEGGKKKETKTDMEAGGNRRSVPTTPPTTMATTTVAGDEGTGS
GRWNENVSSSSLPRHVSSGSLPRHVSRGNMANEDGEGEGAGRLQGRLQQQ
QQQQVSLPPPRHMRRLSSFAERLPVALLCVGDFLSVRVRNVSFPLSIPPS
SPLSSHFSFHRGLAYRLFYQSSAPHPFLPALSFLH*

mRNA from alignment at scaffold_2:1243226..1245183+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1109 ID=mRNA_1109|Name=jgi.p|Nanoce1779_2|151314|organism=Nannochloropsis oceanica|type=mRNA|length=1958bp|location=Sequence derived from alignment at scaffold_2:1243226..1245183+ (Nannochloropsis oceanica)
ATGTCAGAATGGGGATGGATGGGAAAGCGATACGTCGAGCTGAGGTTTGA
TGTCTTTCCTCTGGTGCGGTGCGTGAAAAAAAAGGGAGATTTTAAGTGCC
CATATGAGCGATTATCTCAGATGAATGACGATTGATGCTTGAGGCTGAGG
GCCTCGTTCCTTTCCTCATTTATGTCCGTCCACTCTCTCCACTTAACACC
TACATTACAGGACGCATTCTGACGACCTGGCTTCGTTGTACTCGTCTGCG
TTCGAAATCCACCCTCCTCATAATTTCAGCGTTGTCGTTGCGTTTCTTCA
TTCCTGAAGCGCGACAGTAACCCACAGGGAGCACAAACGTGCCTTGCGTC
GCTCTGGCACTGCGAAGACTTCGCAGCAATGGACATGCTTCTGACTTTCC
TCCGTCAAGACGCCGACACATCCAAGGGGGAGAGTGCCAGTGACAAGGCC
CTCAGACAGCAACTCCAGGATGCTCTCGACCTCATCTCTTCCCTTGTCAC
CCTCTTCCCCCTCGAGCATCTCGCCCTAACCTTCAATGGTGGCAAAGATG
CCTGCGTGGTATTCTACCTCGTGCGCGCTGCCTTAGCCCTGCGAAGGGTA
ACGACCAAAGAGGAGCTCGCCCGTGTCAAGGTTCTGTATTTTGCACCCAA
GCATGGCGAATTTCCGGAAGTGACTTCGTTTATGGAGGAGGTTGTACGCA
CGTTTGACTTCACATATACGGTGTATCCACCGGGATGTTCCTACAAGGAG
GGAATGCGGGATCTGGTGGAGAGGGAGGGCTTAAAAGCGGTCTTTCTGGG
GGTGCGGAGTGGAGATCCTTATTCATGTACGTAGGGAGGGCGGGAGGGAG
GGAGGAGGGGTGAGGAAAGAGGCGGAGGGAATGAAAGAGAAAGGAGTTCT
GCAAGGTTTTAAGGAGACTTTTTTTTGTTCATTTGAGCGGTAGTTGCATA
GACACACATCCTCTCCCTCTCTCGCTACCTCCCTCATTCCCACAGTGGAA
AGCGAACACCTCCAACCCTCGTCCCCAGGCTGGCCTGTCTTCCTCCGGGT
CAACCCCATCCTCAAGTGGGATTACGGCCAAGTCTGGCGGTTTCTGCGTC
GATTTAATCTTCCTTATTGCTCTCTGTATGATGAGGGATATACGTCTTTA
GGCGATATTAGGACGACAATACGGAATCCCGCTCTGTTGAAAGAGGGAGG
GAAGGAGGGCGGGAGGGAGGGGAGCGAGGAGAAGGAGAGGTATAGACCGG
CGCATGAGTTGGTGGACTGGACGCTGGAAAGGGCAAATCGGATCGTGGCA
GAGGAGGGGGAGGGGGAGGGGGAGGGAGGGAAGAAGAAAGAGACGAAGAC
GGACATGGAAGCCGGTGGAAACAGAAGAAGTGTGCCGACGACCCCCCCCA
CGACGATGGCGACGACGACTGTCGCGGGCGATGAAGGAACGGGGAGCGGG
AGATGGAACGAAAACGTATCTTCGAGCTCTTTGCCAAGGCATGTATCTTC
GGGCTCTTTGCCAAGGCATGTATCCAGGGGAAATATGGCGAACGAGGACG
GGGAAGGAGAAGGGGCTGGCCGATTGCAAGGTCGGCTGCAGCAGCAGCAG
CAGCAGCAAGTCTCCCTGCCCCCGCCACGACACATGCGAAGGCTCAGCAG
CTTTGCCGAGCGCCTGCCCGTTGCCTTGCTATGTGTAGGAGACTTCTTAT
CAGTGCGTGTGCGTAATGTTTCCTTTCCCCTCTCCATTCCTCCCTCGTCT
CCTCTCTCCTCCCATTTCTCCTTTCATCGTGGACTTGCTTATCGACTTTT
CTATCAAAGCTCTGCTCCTCATCCTTTCCTCCCCGCTCTCTCTTTCCTCC
ACTAGGACTCGGCGCCCATGGCGTTGGCACACGAATTGAGAGAGCTCCGC
TGCCGGGTCGCGCCTATAATCATCACACCTCGCCCATCTCTTTCCAAGGA
GGCAGGGA

Coding sequence (CDS) from alignment at scaffold_2:1243226..1245183+

>mRNA_1109 ID=mRNA_1109|Name=jgi.p|Nanoce1779_2|151314|organism=Nannochloropsis oceanica|type=CDS|length=2616bp|location=Sequence derived from alignment at scaffold_2:1243226..1245183+ (Nannochloropsis oceanica)
ATGGACATGCTTCTGACTTTCCTCCGTCAAGACGCCGACACATCCAAGGG
GGAGAGTGCCAGTGACAAGGCCCTCAGACAGCAACTCCAGGATGCTCTCG
ACCTCATCTCTTCCCTTGTCACCCTCTTCCCCCTCGAGCATCTCGCCCTA
ACCTTCAATGGTGGCAAAGATGCCTGCGTGGTATTCTACCTCGTGCGCGC
TGCCTTAGCCCTGCGAAGGGTAACGACCAAAGAGGAGCTCGCCCGTGTCA
AGGTTCTGTATTTTGCACCCAAGCATGGCGAATTTCCGGAAGTGACTTCG
TTTATGGAGGAGGTTGTACGCACGTTTGACTTCACATATACGGTGTATCC
ACCGGGATGTTCCTACAAGGAGGGAATGCGGGATCTGGTGGAGAGGGAGG
GCTTAAAAGCGGTCTTTCTGGGGGTGCGGAGTGGAGATCCTTATTCATTG
GAAAGCGAACACCTCCAACCCTCGTCCCCAGGCTGGCCTGTCTTCCTCCG
GGTCAACCCCATCCTCAAGTGGGATTACGGCCAAGTCTGGCGGTTTCTGC
GTCGATTTAATCTTCCTTATTGCTCTCTGTATGATGAGGGATATACGTCT
TTAGGCGATATTAGGACGACAATACGGAATCCCGCTCTGTTGAAAGAGGG
AGGGAAGGAGGGCGGGAGGGAGGGGAGCGAGGAGAAGGAGAGGTATAGAC
CGGCGCATGAGTTGGTGGACTGGACGCTGGAAAGGGCAAATCGGATCGTG
GCAGAGGAGGGGGAGGGGGAGGGGGAGGGAGGGAAGAAGAAAGAGACGAA
GACGGACATGGAAGCCGGTGGAAACAGAAGAAGTGTGCCGACGACCCCCC
CCACGACGATGGCGACGACGACTGTCGCGGGCGATGAAGGAACGGGGAGC
GGGAGATGGAACGAAAACGTATCTTCGAGCTCTTTGCCAAGGCATGTATC
TTCGGGCTCTTTGCCAAGGCATGTATCCAGGGGAAATATGGCGAACGAGG
ACGGGGAAGGAGAAGGGGCTGGCCGATTGCAAGGTCGGCTGCAGCAGCAG
CAGCAGCAGCAAGTCTCCCTGCCCCCGCCACGACACATGCGAAGGCTCAG
CAGCTTTGCCGAGCGCCTGCCCGTTGCCTTGCTATGTGTAGGAGACTTCT
TATCAGTGCGTGTGCGTAATGTTTCCTTTCCCCTCTCCATTCCTCCCTCG
TCTCCTCTCTCCTCCCATTTCTCCTTTCATCGTGGACTTGCTTATCGACT
TTTCTATCAAAGCTCTGCTCCTCATCCTTTCCTCCCCGCTCTCTCTTTCC
TCCACTAGATGGACATGCTTCTGACTTTCCTCCGTCAAGACGCCGACACA
TCCAAGGGGGAGAGTGCCAGTGACAAGGCCCTCAGACAGCAACTCCAGGA
TGCTCTCGACCTCATCTCTTCCCTTGTCACCCTCTTCCCCCTCGAGCATC
TCGCCCTAACCTTCAATGGTGGCAAAGATGCCTGCGTGGTATTCTACCTC
GTGCGCGCTGCCTTAGCCCTGCGAAGGGTAACGACCAAAGAGGAGCTCGC
CCGTGTCAAGGTTCTGTATTTTGCACCCAAGCATGGCGAATTTCCGGAAG
TGACTTCGTTTATGGAGGAGGTTGTACGCACGTTTGACTTCACATATACG
GTGTATCCACCGGGATGTTCCTACAAGGAGGGAATGCGGGATCTGGTGGA
GAGGGAGGGCTTAAAAGCGGTCTTTCTGGGGGTGCGGAGTGGAGATCCTT
ATTCATTGGAAAGCGAACACCTCCAACCCTCGTCCCCAGGCTGGCCTGTC
TTCCTCCGGGTCAACCCCATCCTCAAGTGGGATTACGGCCAAGTCTGGCG
GTTTCTGCGTCGATTTAATCTTCCTTATTGCTCTCTGTATGATGAGGGAT
ATACGTCTTTAGGCGATATTAGGACGACAATACGGAATCCCGCTCTGTTG
AAAGAGGGAGGGAAGGAGGGCGGGAGGGAGGGGAGCGAGGAGAAGGAGAG
GTATAGACCGGCGCATGAGTTGGTGGACTGGACGCTGGAAAGGGCAAATC
GGATCGTGGCAGAGGAGGGGGAGGGGGAGGGGGAGGGAGGGAAGAAGAAA
GAGACGAAGACGGACATGGAAGCCGGTGGAAACAGAAGAAGTGTGCCGAC
GACCCCCCCCACGACGATGGCGACGACGACTGTCGCGGGCGATGAAGGAA
CGGGGAGCGGGAGATGGAACGAAAACGTATCTTCGAGCTCTTTGCCAAGG
CATGTATCTTCGGGCTCTTTGCCAAGGCATGTATCCAGGGGAAATATGGC
GAACGAGGACGGGGAAGGAGAAGGGGCTGGCCGATTGCAAGGTCGGCTGC
AGCAGCAGCAGCAGCAGCAAGTCTCCCTGCCCCCGCCACGACACATGCGA
AGGCTCAGCAGCTTTGCCGAGCGCCTGCCCGTTGCCTTGCTATGTGTAGG
AGACTTCTTATCAGTGCGTGTGCGTAATGTTTCCTTTCCCCTCTCCATTC
CTCCCTCGTCTCCTCTCTCCTCCCATTTCTCCTTTCATCGTGGACTTGCT
TATCGACTTTTCTATCAAAGCTCTGCTCCTCATCCTTTCCTCCCCGCTCT
CTCTTTCCTCCACTAG

Synonyms

Publications