jgi.p|Nanoce1779_2|575345, mRNA_1108 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575345
Unique Name	mRNA_1108
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2245
Alignment location	scaffold_2:1240936..1243180 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575431
Track	FilteredModels2
ProteinId	575345

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1240936..1243180 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575345	gene_1108	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575345	mRNA_1108-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1108	CDS_1108	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1240936..1243180-
coding sequence from alignment at scaffold_2:1240936..1243180-

mRNA sequence

>mRNA_1108 ID=mRNA_1108|Name=jgi.p|Nanoce1779_2|575345|organism=Nannochloropsis oceanica|type=mRNA|length=2245bp
ACAGGGCTGGCACGATTTCCAGGCGCGCTTCGCTGGCCTCCCAATTTAAA
TTTTGCCGGGCAACGAATTCTGCTGGCCTACACCTGTCCAGGCATAATGC
AGGCATAATCCATAGATTAGACTGAGAGTCTGACAGCCCACAAAAGCAAC
CGATTGTATTCTCTAGGGACAAGATTGCCGCCAGGTCATACCGCGCCTTG
TTTGAGGGCGTCCAACTCCAAGCTCCAGCGACACGCGTCCTGTCCTGTCC
CCCTGGACCCAGCCAGGGGACCTAACTTCTGATCCCATTCCATCCAAGAG
CCCTACACTACCGCTTTATTGCGTTCTCTGTTGATGACATCCCCCCCCGC
GACGACTTACTCCTGGCGCTCCACGCCCAGGCGGGCGCTCGTCGTTATGG
CCCTGATGGGGATGGCATATGCCCTTGTCTTCGCGGTCATCTACAGCCCT
CAAATGGCGAGTTCCACCGCGGATTCCCTTTTGAACCGTGGGTTACGGTT
GCAGCATACAATCGCAAGTTTGAGAATCAGTAGCAACACCACAGCGTCGG
GGCCCTCAGCAGTGGCAGCATCACATGGGGAAGAGGAGGAGGATGAACAC
TCTTCGGCAGACCTGATAGGGAAGAATCAAAACGTCGGTAATACACGCAA
CGATTATGAACCCTTGGTAGGCGGCAGTCTGTGGCAAGCCCTGGACGCGG
AGATGCGGGCGCGGCCAGATTTTGAAATGCTGACGTCCACGAAGGATGTC
CAACCGTTCCGATCTCCCGAGGAGATGGCGCGAGCCCAAGCTTGTTTCCG
ACAGTCCAAGGGATACGGGTACCTGCTCCACATGCGCAAAGCGGGAGGAT
CAACTTTGCGGGGCTATTTGAGTTCTGTAGTGGAGAAACAGCGGGACCAT
TTAATTTACGTCTCGGAGGGGCTTACCTTCAACGTCTCATGCTTCCAGGA
CCAAGGGGAGCTTGTAATGGTCACATCTCTTCGGCACCCCATGGCGCGTA
TTCTGTCTTCTTATTGGTACGAGGGAAGGTACGATTCCAAGCCCGCTTAT
TTGGAACCCGGTACGAGTACCGCCCTAGCCGCTGCGGTCGTCAATCAAAC
GGAAATCGAAGCAACCTTGCCGGCGTCTTTTTCCGCATGGGTCCGCTTTG
TCCGACGAAATGATTACATACGTTGGGCTTGGATGAGTACTCGATGGGTT
TGGTACTCCGTAGATTCCTACTATATCCAAACTTTGACGAACCGCTACCG
AAAGAATACTCGCAACAATATAGGCCGGAGGGATTTCGAGCTTGCAAAGC
GGGTGCTTGCAAGCTTTGACTTGGTCTCGATCACGGAGTGGATGGACTGG
AAGAACCAAACAAGCTACATCCAGCATGCGCTGGGGCAAGACGCAGAGGA
ACTTCCGTACGGGCTGCTTCAGCGGAACAAGCTCTCCAAACCGAAAAATG
ATAGTGAGATCGACCGCGACTTTTTTGCTGAGCTGTGGCGGGCCAACACC
TGGGATATACTCTTGTATGAATATGCTCAGAACCTAGTTCGGGAACGACT
GGTTGCATTTCAGGATCACATGACGGACCTTGAACAATGGCGCACGGGAT
CAGAGAACGAAGGAGTTGCGACTGGCGCTCGAAAATCGCGGCGACAACAA
ACCGACCAATTAGAGTGTCGGGCGCCGCGGAACGACCCGCGCTGGAGGAA
GCGTAAGCAAGACTACTACAAGCCCAACAATGATTCCTATCTGTATGTGA
TGCCGCGTTGTATGGATATGGGGGACGAAAAGCGGGGAGCATAAGACCTG
TGGGTAACTTCGTACATGCATGTGGAAAGTTTTTAGTAGCGCAACCCGGT
GAATACATAAGTCACTTAGGTGATAAAAGGGCGTACGAGACTGAGACAAC
ATGGAAATTAGAGGATACTAAGGGGCAGATGCGCAAGTCGAGATGTGTGT
GTAACTGTGTGTTTGAGTGTGTGTGGAGTGTCTGTGAATATGGAGTGTGG
TAGGGAGGTTGGCCATTGTGTTGGATGACAGACGAGTGGCAGACACGTAC
GGTAAGAAATTAAAATACTGCGCCAAGGCGACATCGGTACGGAAGCAGAC
AAGGTGGTAAATGAGGGCGCGGGCGAAGCACAACACCTTCTGATGTGCTA
CGGAGACCAATAAACCAAAATGTTCCTGCGACCAATCACAAAATAATAAT
GGGGAAAATATGAATAAGAAAAGAATCAAGACCAAATCGCGGTAA

protein sequence of jgi.p|Nanoce1779_2|575345

>mRNA_1108-protein ID=mRNA_1108-protein|Name=jgi.p|Nanoce1779_2|575345|organism=Nannochloropsis oceanica|type=polypeptide|length=487bp
MTSPPATTYSWRSTPRRALVVMALMGMAYALVFAVIYSPQMASSTADSLL
NRGLRLQHTIASLRISSNTTASGPSAVAASHGEEEEDEHSSADLIGKNQN
VGNTRNDYEPLVGGSLWQALDAEMRARPDFEMLTSTKDVQPFRSPEEMAR
AQACFRQSKGYGYLLHMRKAGGSTLRGYLSSVVEKQRDHLIYVSEGLTFN
VSCFQDQGELVMVTSLRHPMARILSSYWYEGRYDSKPAYLEPGTSTALAA
AVVNQTEIEATLPASFSAWVRFVRRNDYIRWAWMSTRWVWYSVDSYYIQT
LTNRYRKNTRNNIGRRDFELAKRVLASFDLVSITEWMDWKNQTSYIQHAL
GQDAEELPYGLLQRNKLSKPKNDSEIDRDFFAELWRANTWDILLYEYAQN
LVRERLVAFQDHMTDLEQWRTGSENEGVATGARKSRRQQTDQLECRAPRN
DPRWRKRKQDYYKPNNDSYLYVMPRCMDMGDEKRGA*

mRNA from alignment at scaffold_2:1240936..1243180-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1108 ID=mRNA_1108|Name=jgi.p|Nanoce1779_2|575345|organism=Nannochloropsis oceanica|type=mRNA|length=2245bp|location=Sequence derived from alignment at scaffold_2:1240936..1243180- (Nannochloropsis oceanica)
ACAGGGCTGGCACGATTTCCAGGCGCGCTTCGCTGGCCTCCCAATTTAAA
TTTTGCCGGGCAACGAATTCTGCTGGCCTACACCTGTCCAGGCATAATGC
AGGCATAATCCATAGATTAGACTGAGAGTCTGACAGCCCACAAAAGCAAC
CGATTGTATTCTCTAGGGACAAGATTGCCGCCAGGTCATACCGCGCCTTG
TTTGAGGGCGTCCAACTCCAAGCTCCAGCGACACGCGTCCTGTCCTGTCC
CCCTGGACCCAGCCAGGGGACCTAACTTCTGATCCCATTCCATCCAAGAG
CCCTACACTACCGCTTTATTGCGTTCTCTGTTGATGACATCCCCCCCCGC
GACGACTTACTCCTGGCGCTCCACGCCCAGGCGGGCGCTCGTCGTTATGG
CCCTGATGGGGATGGCATATGCCCTTGTCTTCGCGGTCATCTACAGCCCT
CAAATGGCGAGTTCCACCGCGGATTCCCTTTTGAACCGTGGGTTACGGTT
GCAGCATACAATCGCAAGTTTGAGAATCAGTAGCAACACCACAGCGTCGG
GGCCCTCAGCAGTGGCAGCATCACATGGGGAAGAGGAGGAGGATGAACAC
TCTTCGGCAGACCTGATAGGGAAGAATCAAAACGTCGGTAATACACGCAA
CGATTATGAACCCTTGGTAGGCGGCAGTCTGTGGCAAGCCCTGGACGCGG
AGATGCGGGCGCGGCCAGATTTTGAAATGCTGACGTCCACGAAGGATGTC
CAACCGTTCCGATCTCCCGAGGAGATGGCGCGAGCCCAAGCTTGTTTCCG
ACAGTCCAAGGGATACGGGTACCTGCTCCACATGCGCAAAGCGGGAGGAT
CAACTTTGCGGGGCTATTTGAGTTCTGTAGTGGAGAAACAGCGGGACCAT
TTAATTTACGTCTCGGAGGGGCTTACCTTCAACGTCTCATGCTTCCAGGA
CCAAGGGGAGCTTGTAATGGTCACATCTCTTCGGCACCCCATGGCGCGTA
TTCTGTCTTCTTATTGGTACGAGGGAAGGTACGATTCCAAGCCCGCTTAT
TTGGAACCCGGTACGAGTACCGCCCTAGCCGCTGCGGTCGTCAATCAAAC
GGAAATCGAAGCAACCTTGCCGGCGTCTTTTTCCGCATGGGTCCGCTTTG
TCCGACGAAATGATTACATACGTTGGGCTTGGATGAGTACTCGATGGGTT
TGGTACTCCGTAGATTCCTACTATATCCAAACTTTGACGAACCGCTACCG
AAAGAATACTCGCAACAATATAGGCCGGAGGGATTTCGAGCTTGCAAAGC
GGGTGCTTGCAAGCTTTGACTTGGTCTCGATCACGGAGTGGATGGACTGG
AAGAACCAAACAAGCTACATCCAGCATGCGCTGGGGCAAGACGCAGAGGA
ACTTCCGTACGGGCTGCTTCAGCGGAACAAGCTCTCCAAACCGAAAAATG
ATAGTGAGATCGACCGCGACTTTTTTGCTGAGCTGTGGCGGGCCAACACC
TGGGATATACTCTTGTATGAATATGCTCAGAACCTAGTTCGGGAACGACT
GGTTGCATTTCAGGATCACATGACGGACCTTGAACAATGGCGCACGGGAT
CAGAGAACGAAGGAGTTGCGACTGGCGCTCGAAAATCGCGGCGACAACAA
ACCGACCAATTAGAGTGTCGGGCGCCGCGGAACGACCCGCGCTGGAGGAA
GCGTAAGCAAGACTACTACAAGCCCAACAATGATTCCTATCTGTATGTGA
TGCCGCGTTGTATGGATATGGGGGACGAAAAGCGGGGAGCATAAGACCTG
TGGGTAACTTCGTACATGCATGTGGAAAGTTTTTAGTAGCGCAACCCGGT
GAATACATAAGTCACTTAGGTGATAAAAGGGCGTACGAGACTGAGACAAC
ATGGAAATTAGAGGATACTAAGGGGCAGATGCGCAAGTCGAGATGTGTGT
GTAACTGTGTGTTTGAGTGTGTGTGGAGTGTCTGTGAATATGGAGTGTGG
TAGGGAGGTTGGCCATTGTGTTGGATGACAGACGAGTGGCAGACACGTAC
GGTAAGAAATTAAAATACTGCGCCAAGGCGACATCGGTACGGAAGCAGAC
AAGGTGGTAAATGAGGGCGCGGGCGAAGCACAACACCTTCTGATGTGCTA
CGGAGACCAATAAACCAAAATGTTCCTGCGACCAATCACAAAATAATAAT
GGGGAAAATATGAATAAGAAAAGAATCAAGACCAAATCGCGGTAA

Coding sequence (CDS) from alignment at scaffold_2:1240936..1243180-

>mRNA_1108 ID=mRNA_1108|Name=jgi.p|Nanoce1779_2|575345|organism=Nannochloropsis oceanica|type=CDS|length=1461bp|location=Sequence derived from alignment at scaffold_2:1240936..1243180- (Nannochloropsis oceanica)
ATGACATCCCCCCCCGCGACGACTTACTCCTGGCGCTCCACGCCCAGGCG
GGCGCTCGTCGTTATGGCCCTGATGGGGATGGCATATGCCCTTGTCTTCG
CGGTCATCTACAGCCCTCAAATGGCGAGTTCCACCGCGGATTCCCTTTTG
AACCGTGGGTTACGGTTGCAGCATACAATCGCAAGTTTGAGAATCAGTAG
CAACACCACAGCGTCGGGGCCCTCAGCAGTGGCAGCATCACATGGGGAAG
AGGAGGAGGATGAACACTCTTCGGCAGACCTGATAGGGAAGAATCAAAAC
GTCGGTAATACACGCAACGATTATGAACCCTTGGTAGGCGGCAGTCTGTG
GCAAGCCCTGGACGCGGAGATGCGGGCGCGGCCAGATTTTGAAATGCTGA
CGTCCACGAAGGATGTCCAACCGTTCCGATCTCCCGAGGAGATGGCGCGA
GCCCAAGCTTGTTTCCGACAGTCCAAGGGATACGGGTACCTGCTCCACAT
GCGCAAAGCGGGAGGATCAACTTTGCGGGGCTATTTGAGTTCTGTAGTGG
AGAAACAGCGGGACCATTTAATTTACGTCTCGGAGGGGCTTACCTTCAAC
GTCTCATGCTTCCAGGACCAAGGGGAGCTTGTAATGGTCACATCTCTTCG
GCACCCCATGGCGCGTATTCTGTCTTCTTATTGGTACGAGGGAAGGTACG
ATTCCAAGCCCGCTTATTTGGAACCCGGTACGAGTACCGCCCTAGCCGCT
GCGGTCGTCAATCAAACGGAAATCGAAGCAACCTTGCCGGCGTCTTTTTC
CGCATGGGTCCGCTTTGTCCGACGAAATGATTACATACGTTGGGCTTGGA
TGAGTACTCGATGGGTTTGGTACTCCGTAGATTCCTACTATATCCAAACT
TTGACGAACCGCTACCGAAAGAATACTCGCAACAATATAGGCCGGAGGGA
TTTCGAGCTTGCAAAGCGGGTGCTTGCAAGCTTTGACTTGGTCTCGATCA
CGGAGTGGATGGACTGGAAGAACCAAACAAGCTACATCCAGCATGCGCTG
GGGCAAGACGCAGAGGAACTTCCGTACGGGCTGCTTCAGCGGAACAAGCT
CTCCAAACCGAAAAATGATAGTGAGATCGACCGCGACTTTTTTGCTGAGC
TGTGGCGGGCCAACACCTGGGATATACTCTTGTATGAATATGCTCAGAAC
CTAGTTCGGGAACGACTGGTTGCATTTCAGGATCACATGACGGACCTTGA
ACAATGGCGCACGGGATCAGAGAACGAAGGAGTTGCGACTGGCGCTCGAA
AATCGCGGCGACAACAAACCGACCAATTAGAGTGTCGGGCGCCGCGGAAC
GACCCGCGCTGGAGGAAGCGTAAGCAAGACTACTACAAGCCCAACAATGA
TTCCTATCTGTATGTGATGCCGCGTTGTATGGATATGGGGGACGAAAAGC
GGGGAGCATAA

Synonyms

Publications