jgi.p|Nanoce1779_2|575341, mRNA_1106 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575341
Unique Name	mRNA_1106
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1705
Alignment location	scaffold_2:1235853..1237557 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575427
Track	FilteredModels2
ProteinId	575341

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1235853..1237557 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575341	gene_1106	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575341	mRNA_1106-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1106	CDS_1106	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1235853..1237557+
coding sequence from alignment at scaffold_2:1235853..1237557+

mRNA sequence

>mRNA_1106 ID=mRNA_1106|Name=jgi.p|Nanoce1779_2|575341|organism=Nannochloropsis oceanica|type=mRNA|length=1705bp
CCGCATGCGCTCCCCCAGATTTTCCACCCCTCCTTATCATTCTTCTCGGT
CACCCTCCTCTTCCTCTTCCTCCTCCTCCTTCTCCTCCTCCCCGCAATCG
TTCCCCAAAAAAATCGGCCCTATCTCAGAAGAAGTGGGCCAACACCTTAC
CCCTAAGATGTACGCGCCGCGAGAAGCCTTTGACATCGATGCACGACCCA
ACAGTCGCAAGGCTCGCAAGGCCGCCTCATCGGCAGCAGCGACGGGTGCA
CGAGGAGGAGGGGGGGAAGAGGAAGGGGGTGAGGGAGGGGGAGGTGGATG
GCGAAGGCCGTCGAGGATTGATCAGCGGAGGGACAGGAAGCAGAAGGCGG
CGGTCGATGAGAAGATGAGGAGGTTGAAGGTGCAAAGGTTTGGAAAGGAG
GGATTATTGTTCAAAGACGGGCAAGCGGGGGGGAGGGAGGGAGGGGGAAA
GGACGATTTGCTGCAGTGTGAGCATTTTGGGGCATGTTCCGGGTGTTTTT
TCAGGAGCGGGTTCACAGAGACTCCGTTAATGGAGGATGCCCGCGTGTTT
TTCCGACGGGTGGCTCGGTACGAGAACTTTAATTTGGGCCTCGCGACCGG
TATACATGACTGGCGGACACAAGCCAAGCTGGCTATTGCCCCTCTCTCCA
AATGGGGGGGTTGTCGCATCGGGCTTTATGAGGAAGGGACACATCGCGTC
TTGCCCATTCCCAACTGCCGAGTCCACCATCCAAGCATCAACCATGCCGT
GGATATCATTACTCAAGCAACCGAACTTGTCAAAACCCGTGCATTTGACC
AAGATTCCCTTAGTGGCTCCCTGCGCTACATCCAATGCGCCGTGGAACGG
CGCACGGGGAAAATCCAGCTTACCCTTGTCTGGAACGCCCCTGGGCGGAA
AGAGGCCAGTGCGGAGCTTTCCCGCTTGCTGAAAGCCTTGAAGGCTGCTG
ATCCTGCGCAAGAATTATGGCATTCGATTTGGGTCAATTATAGAACCGGG
CCAGGCAATACAATTTTTGCACGGGACCCGAGGTCATGGTCCAAGGTGCA
GGGGCTTGATTATCTAACGGAAAAGATAGGGCCGAGCCAAGTGTTATTTT
ATTTGACACCGCAGTTGTTTCGACAGGGAAATTTGGAGGGCTTTGGGAAG
GTAGTGGAGAGAGCACAGGATTTCGTGCCGGAGCAGAGTGTGGTGTGTGA
ATTGTATGGAGGGGTGGGGGTGATTGGGTTGAACATGCTCGGGAAGGTCT
CGGCCTTAAGATTTTCGGATATCAATCCTTTTCTGGAAGGGTGTGTAATG
AAGACGTTGGATGCGCTGCCAGAAAAGAGGCGAGAGAAGGTGTCGTTCAT
GGTGGCGACGGCTTTGGAGGGGTTGGAGGCAGGGCAGGCGGATGGCGCGG
ATGTCTTGATTGTGGATCCTCCGCGGAAGGGCTTAGAAGCGGAAGTGATG
ACGCATTTGGTGGACAGGAAGGACCCATTGGCAGGGAGTTTGAAACGAAT
TGTGTATGTCTCGTGTGGGTTTGATGCGTTAAAGCGGGACGCGGTGGCCT
TGATGGACAGTGGGTGGCGCTTGGTGCATGCCGAGGGCTTTGTCTTGTTT
CCGGGGTCGGATCATTTGGAGACGCTGGCCATTTTTGACCGGGGACGATA
AGTATTGAGGGAGTAAACAGGAAAGTAAATTAAGGTAAATGCTTGACATG
AAAAA

protein sequence of jgi.p|Nanoce1779_2|575341

>mRNA_1106-protein ID=mRNA_1106-protein|Name=jgi.p|Nanoce1779_2|575341|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MRSPRFSTPPYHSSRSPSSSSSSSSFSSSPQSFPKKIGPISEEVGQHLTP
KMYAPREAFDIDARPNSRKARKAASSAAATGARGGGGEEEGGEGGGGGWR
RPSRIDQRRDRKQKAAVDEKMRRLKVQRFGKEGLLFKDGQAGGREGGGKD
DLLQCEHFGACSGCFFRSGFTETPLMEDARVFFRRVARYENFNLGLATGI
HDWRTQAKLAIAPLSKWGGCRIGLYEEGTHRVLPIPNCRVHHPSINHAVD
IITQATELVKTRAFDQDSLSGSLRYIQCAVERRTGKIQLTLVWNAPGRKE
ASAELSRLLKALKAADPAQELWHSIWVNYRTGPGNTIFARDPRSWSKVQG
LDYLTEKIGPSQVLFYLTPQLFRQGNLEGFGKVVERAQDFVPEQSVVCEL
YGGVGVIGLNMLGKVSALRFSDINPFLEGCVMKTLDALPEKRREKVSFMV
ATALEGLEAGQADGADVLIVDPPRKGLEAEVMTHLVDRKDPLAGSLKRIV
YVSCGFDALKRDAVALMDSGWRLVHAEGFVLFPGSDHLETLAIFDRGR*

mRNA from alignment at scaffold_2:1235853..1237557+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1106 ID=mRNA_1106|Name=jgi.p|Nanoce1779_2|575341|organism=Nannochloropsis oceanica|type=mRNA|length=1705bp|location=Sequence derived from alignment at scaffold_2:1235853..1237557+ (Nannochloropsis oceanica)
CCGCATGCGCTCCCCCAGATTTTCCACCCCTCCTTATCATTCTTCTCGGT
CACCCTCCTCTTCCTCTTCCTCCTCCTCCTTCTCCTCCTCCCCGCAATCG
TTCCCCAAAAAAATCGGCCCTATCTCAGAAGAAGTGGGCCAACACCTTAC
CCCTAAGATGTACGCGCCGCGAGAAGCCTTTGACATCGATGCACGACCCA
ACAGTCGCAAGGCTCGCAAGGCCGCCTCATCGGCAGCAGCGACGGGTGCA
CGAGGAGGAGGGGGGGAAGAGGAAGGGGGTGAGGGAGGGGGAGGTGGATG
GCGAAGGCCGTCGAGGATTGATCAGCGGAGGGACAGGAAGCAGAAGGCGG
CGGTCGATGAGAAGATGAGGAGGTTGAAGGTGCAAAGGTTTGGAAAGGAG
GGATTATTGTTCAAAGACGGGCAAGCGGGGGGGAGGGAGGGAGGGGGAAA
GGACGATTTGCTGCAGTGTGAGCATTTTGGGGCATGTTCCGGGTGTTTTT
TCAGGAGCGGGTTCACAGAGACTCCGTTAATGGAGGATGCCCGCGTGTTT
TTCCGACGGGTGGCTCGGTACGAGAACTTTAATTTGGGCCTCGCGACCGG
TATACATGACTGGCGGACACAAGCCAAGCTGGCTATTGCCCCTCTCTCCA
AATGGGGGGGTTGTCGCATCGGGCTTTATGAGGAAGGGACACATCGCGTC
TTGCCCATTCCCAACTGCCGAGTCCACCATCCAAGCATCAACCATGCCGT
GGATATCATTACTCAAGCAACCGAACTTGTCAAAACCCGTGCATTTGACC
AAGATTCCCTTAGTGGCTCCCTGCGCTACATCCAATGCGCCGTGGAACGG
CGCACGGGGAAAATCCAGCTTACCCTTGTCTGGAACGCCCCTGGGCGGAA
AGAGGCCAGTGCGGAGCTTTCCCGCTTGCTGAAAGCCTTGAAGGCTGCTG
ATCCTGCGCAAGAATTATGGCATTCGATTTGGGTCAATTATAGAACCGGG
CCAGGCAATACAATTTTTGCACGGGACCCGAGGTCATGGTCCAAGGTGCA
GGGGCTTGATTATCTAACGGAAAAGATAGGGCCGAGCCAAGTGTTATTTT
ATTTGACACCGCAGTTGTTTCGACAGGGAAATTTGGAGGGCTTTGGGAAG
GTAGTGGAGAGAGCACAGGATTTCGTGCCGGAGCAGAGTGTGGTGTGTGA
ATTGTATGGAGGGGTGGGGGTGATTGGGTTGAACATGCTCGGGAAGGTCT
CGGCCTTAAGATTTTCGGATATCAATCCTTTTCTGGAAGGGTGTGTAATG
AAGACGTTGGATGCGCTGCCAGAAAAGAGGCGAGAGAAGGTGTCGTTCAT
GGTGGCGACGGCTTTGGAGGGGTTGGAGGCAGGGCAGGCGGATGGCGCGG
ATGTCTTGATTGTGGATCCTCCGCGGAAGGGCTTAGAAGCGGAAGTGATG
ACGCATTTGGTGGACAGGAAGGACCCATTGGCAGGGAGTTTGAAACGAAT
TGTGTATGTCTCGTGTGGGTTTGATGCGTTAAAGCGGGACGCGGTGGCCT
TGATGGACAGTGGGTGGCGCTTGGTGCATGCCGAGGGCTTTGTCTTGTTT
CCGGGGTCGGATCATTTGGAGACGCTGGCCATTTTTGACCGGGGACGATA
AGTATTGAGGGAGTAAACAGGAAAGTAAATTAAGGTAAATGCTTGACATG
AAAAA

Coding sequence (CDS) from alignment at scaffold_2:1235853..1237557+

>mRNA_1106 ID=mRNA_1106|Name=jgi.p|Nanoce1779_2|575341|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at scaffold_2:1235853..1237557+ (Nannochloropsis oceanica)
ATGCGCTCCCCCAGATTTTCCACCCCTCCTTATCATTCTTCTCGGTCACC
CTCCTCTTCCTCTTCCTCCTCCTCCTTCTCCTCCTCCCCGCAATCGTTCC
CCAAAAAAATCGGCCCTATCTCAGAAGAAGTGGGCCAACACCTTACCCCT
AAGATGTACGCGCCGCGAGAAGCCTTTGACATCGATGCACGACCCAACAG
TCGCAAGGCTCGCAAGGCCGCCTCATCGGCAGCAGCGACGGGTGCACGAG
GAGGAGGGGGGGAAGAGGAAGGGGGTGAGGGAGGGGGAGGTGGATGGCGA
AGGCCGTCGAGGATTGATCAGCGGAGGGACAGGAAGCAGAAGGCGGCGGT
CGATGAGAAGATGAGGAGGTTGAAGGTGCAAAGGTTTGGAAAGGAGGGAT
TATTGTTCAAAGACGGGCAAGCGGGGGGGAGGGAGGGAGGGGGAAAGGAC
GATTTGCTGCAGTGTGAGCATTTTGGGGCATGTTCCGGGTGTTTTTTCAG
GAGCGGGTTCACAGAGACTCCGTTAATGGAGGATGCCCGCGTGTTTTTCC
GACGGGTGGCTCGGTACGAGAACTTTAATTTGGGCCTCGCGACCGGTATA
CATGACTGGCGGACACAAGCCAAGCTGGCTATTGCCCCTCTCTCCAAATG
GGGGGGTTGTCGCATCGGGCTTTATGAGGAAGGGACACATCGCGTCTTGC
CCATTCCCAACTGCCGAGTCCACCATCCAAGCATCAACCATGCCGTGGAT
ATCATTACTCAAGCAACCGAACTTGTCAAAACCCGTGCATTTGACCAAGA
TTCCCTTAGTGGCTCCCTGCGCTACATCCAATGCGCCGTGGAACGGCGCA
CGGGGAAAATCCAGCTTACCCTTGTCTGGAACGCCCCTGGGCGGAAAGAG
GCCAGTGCGGAGCTTTCCCGCTTGCTGAAAGCCTTGAAGGCTGCTGATCC
TGCGCAAGAATTATGGCATTCGATTTGGGTCAATTATAGAACCGGGCCAG
GCAATACAATTTTTGCACGGGACCCGAGGTCATGGTCCAAGGTGCAGGGG
CTTGATTATCTAACGGAAAAGATAGGGCCGAGCCAAGTGTTATTTTATTT
GACACCGCAGTTGTTTCGACAGGGAAATTTGGAGGGCTTTGGGAAGGTAG
TGGAGAGAGCACAGGATTTCGTGCCGGAGCAGAGTGTGGTGTGTGAATTG
TATGGAGGGGTGGGGGTGATTGGGTTGAACATGCTCGGGAAGGTCTCGGC
CTTAAGATTTTCGGATATCAATCCTTTTCTGGAAGGGTGTGTAATGAAGA
CGTTGGATGCGCTGCCAGAAAAGAGGCGAGAGAAGGTGTCGTTCATGGTG
GCGACGGCTTTGGAGGGGTTGGAGGCAGGGCAGGCGGATGGCGCGGATGT
CTTGATTGTGGATCCTCCGCGGAAGGGCTTAGAAGCGGAAGTGATGACGC
ATTTGGTGGACAGGAAGGACCCATTGGCAGGGAGTTTGAAACGAATTGTG
TATGTCTCGTGTGGGTTTGATGCGTTAAAGCGGGACGCGGTGGCCTTGAT
GGACAGTGGGTGGCGCTTGGTGCATGCCGAGGGCTTTGTCTTGTTTCCGG
GGTCGGATCATTTGGAGACGCTGGCCATTTTTGACCGGGGACGATAA

Synonyms

Publications