jgi.p|Nanoce1779_2|522647, mRNA_1105 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|522647
Unique Name	mRNA_1105
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1839
Alignment location	scaffold_2:1232229..1234067 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	522733
Track	FilteredModels2
ProteinId	522647

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1232229..1234067 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|522647	gene_1105	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1105	CDS_1105	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|522647	mRNA_1105-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1232229..1234067-
coding sequence from alignment at scaffold_2:1232229..1234067-

mRNA sequence

>mRNA_1105 ID=mRNA_1105|Name=jgi.p|Nanoce1779_2|522647|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp
ATGTTGGGGGATCCGGAAGAGGAGGAGCTGGAGGAGAAGAGAAAGGAGGG
AGGGGAGGAAGGCAAGGCACACGTCAAACCAGACAAGGAAAAGGATGAAT
ACGAGGACGAGGAAGATGAGGATGCAGGGCAGCTGGAGCTCCTCCGTCTG
GCGTTTCGCACACATGACCTCTACTTCTCTCACACGTGTGACGTCACCCT
TACCGCCCAACGCCGCGCCGACCTCTTCCACCCTCCTTCCCTCCTCCCCT
CTCAACCCTCCTTCCCTTCTCTCCTCCCGAAACACTCGAAGCCCAAATCT
CTCCGCCGTCGTTCTCTTCCATTGTGGCAACGGGCCGATGACCGTTTCTT
TTGGAACCGTCCTCTGCTTCAACCGTTGATTGATGCTTCGGCGGATGAAT
GGGTGTTACCCGTCATGAGTGCCTTTGTCCAGGCCGCGCGGAATGTGTCC
TTGTCATTAGGAAGGGGAAAAGAGGCCGGGAGGGAGGGAGGGACGTTGGT
GTTGGTGTCACGGAGGAGTTGTCGGAGGCAGGGAAGGAGGTTTGTGAAGA
GGGGGATCGGCGACGACGGACACACGGCCAACACGGTGGAGACGGAGCAG
ATCTTCATTACCAGGGGGGGAGGGAGGGAGGGAGGGAGGGTGGGAGGGAT
GACTTCATTTGTGCAGCTTCGAGGAAGCATACCGTTGAAGTGGTCGTCGC
CGGCGAACTTGAAATACACTCCGCCGGTGCATGTGGATGGCACGGTAGGG
GAGAGCGTGCGTGCGATGGGGAAACACTATGGGGAGATGATCGGGAGGTA
TGGGCGGAGGGAGGGGGCGAAGGACGGGGTGCCGATGGTTATGATGGTGA
ATTTGATTGATAAAACGAAGGCACAAGGACGCTTGGGGCTAGCATGGGAG
AAGATCCATGCGCTGGTGATGGCTGCTTTGAGCGACACGACCGCGTCGCG
GGCCTTCCTCCCTCCTTCCCTTCCTTCTTCCCTCCCTCCCTCTTCGGTGG
GCTTGACCTGGTTTGACTTCCATGCAGAATGCGCTCACATGCGGTGGGAC
AAGCTGGGGCTCCTTCTCCACCTCCTCCTCCCTACCCTCGAGGGGCAGGG
ATTTTTCCACATGGATGGGGTGGGGAGGGTGGTAGGGAGACAGGGAGGAG
TAGTCCGGACCAACTGCATGGATTGCCTCGATCGGACAAACGTAGTGCAG
AGCGTCTTGGCGCGGTGGTCTCTACGGCAGCAGGTGCAGGCGTTGTTGGT
AGAGGGGGGGGCGGAGGGAGGGAAGGAGGGAGGTGATGTGTTGCAGTTGC
CGTATAAAGGGTTAGAGAAGGCCTTCCGAGCTCTGTGGGGGGGGAACGCG
GACGCGATCAGTGTCCTGTACGCAGGCACGCCGGCACTGAAAGGAGACTT
TACCCGGACGGGGAGGAGGACAAAGGTGGGGATGGTGAGCGATGGTCTGA
ACTCAGCGAAGAGGTATATGATCAACAATTTCGTGGATAATGAGAACCAG
CGGGCGGTGGAGGCGTTGTTGGGAAGGACGCGGGAGGGAGGGAAGGACGG
GTGGACTGTGTGGCCGGTGGAGGAGCGAAGGAAGGACGTAGGGAAGGTCG
GTGCGGAGGGGGTGTGGAGGAAAGTGGTGGTGGAGAAGGGGGGCCTGGAG
GGGGAGCATGAGCTTGATCGGTTGTTGGCGGATGCAGTGCCGCCTTTGAA
AGAGGGGGAGAGGGTAGGGGAGGATGGAAAGAGGGAAAAGCGCGCGAAAG
AGGGAGAGGAGGAAGGGAGGGAGGAGGGAGAGGAGGGGGGGGGGGAAGGA
GGTAATGGAAAAGGTGCAGGAGGAGGTAGATTATTATGA

protein sequence of jgi.p|Nanoce1779_2|522647

>mRNA_1105-protein ID=mRNA_1105-protein|Name=jgi.p|Nanoce1779_2|522647|organism=Nannochloropsis oceanica|type=polypeptide|length=613bp
MLGDPEEEELEEKRKEGGEEGKAHVKPDKEKDEYEDEEDEDAGQLELLRL
AFRTHDLYFSHTCDVTLTAQRRADLFHPPSLLPSQPSFPSLLPKHSKPKS
LRRRSLPLWQRADDRFFWNRPLLQPLIDASADEWVLPVMSAFVQAARNVS
LSLGRGKEAGREGGTLVLVSRRSCRRQGRRFVKRGIGDDGHTANTVETEQ
IFITRGGGREGGRVGGMTSFVQLRGSIPLKWSSPANLKYTPPVHVDGTVG
ESVRAMGKHYGEMIGRYGRREGAKDGVPMVMMVNLIDKTKAQGRLGLAWE
KIHALVMAALSDTTASRAFLPPSLPSSLPPSSVGLTWFDFHAECAHMRWD
KLGLLLHLLLPTLEGQGFFHMDGVGRVVGRQGGVVRTNCMDCLDRTNVVQ
SVLARWSLRQQVQALLVEGGAEGGKEGGDVLQLPYKGLEKAFRALWGGNA
DAISVLYAGTPALKGDFTRTGRRTKVGMVSDGLNSAKRYMINNFVDNENQ
RAVEALLGRTREGGKDGWTVWPVEERRKDVGKVGAEGVWRKVVVEKGGLE
GEHELDRLLADAVPPLKEGERVGEDGKREKRAKEGEEEGREEGEEGGGEG
GNGKGAGGGRLL*

mRNA from alignment at scaffold_2:1232229..1234067-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1105 ID=mRNA_1105|Name=jgi.p|Nanoce1779_2|522647|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp|location=Sequence derived from alignment at scaffold_2:1232229..1234067- (Nannochloropsis oceanica)
ATGTTGGGGGATCCGGAAGAGGAGGAGCTGGAGGAGAAGAGAAAGGAGGG
AGGGGAGGAAGGCAAGGCACACGTCAAACCAGACAAGGAAAAGGATGAAT
ACGAGGACGAGGAAGATGAGGATGCAGGGCAGCTGGAGCTCCTCCGTCTG
GCGTTTCGCACACATGACCTCTACTTCTCTCACACGTGTGACGTCACCCT
TACCGCCCAACGCCGCGCCGACCTCTTCCACCCTCCTTCCCTCCTCCCCT
CTCAACCCTCCTTCCCTTCTCTCCTCCCGAAACACTCGAAGCCCAAATCT
CTCCGCCGTCGTTCTCTTCCATTGTGGCAACGGGCCGATGACCGTTTCTT
TTGGAACCGTCCTCTGCTTCAACCGTTGATTGATGCTTCGGCGGATGAAT
GGGTGTTACCCGTCATGAGTGCCTTTGTCCAGGCCGCGCGGAATGTGTCC
TTGTCATTAGGAAGGGGAAAAGAGGCCGGGAGGGAGGGAGGGACGTTGGT
GTTGGTGTCACGGAGGAGTTGTCGGAGGCAGGGAAGGAGGTTTGTGAAGA
GGGGGATCGGCGACGACGGACACACGGCCAACACGGTGGAGACGGAGCAG
ATCTTCATTACCAGGGGGGGAGGGAGGGAGGGAGGGAGGGTGGGAGGGAT
GACTTCATTTGTGCAGCTTCGAGGAAGCATACCGTTGAAGTGGTCGTCGC
CGGCGAACTTGAAATACACTCCGCCGGTGCATGTGGATGGCACGGTAGGG
GAGAGCGTGCGTGCGATGGGGAAACACTATGGGGAGATGATCGGGAGGTA
TGGGCGGAGGGAGGGGGCGAAGGACGGGGTGCCGATGGTTATGATGGTGA
ATTTGATTGATAAAACGAAGGCACAAGGACGCTTGGGGCTAGCATGGGAG
AAGATCCATGCGCTGGTGATGGCTGCTTTGAGCGACACGACCGCGTCGCG
GGCCTTCCTCCCTCCTTCCCTTCCTTCTTCCCTCCCTCCCTCTTCGGTGG
GCTTGACCTGGTTTGACTTCCATGCAGAATGCGCTCACATGCGGTGGGAC
AAGCTGGGGCTCCTTCTCCACCTCCTCCTCCCTACCCTCGAGGGGCAGGG
ATTTTTCCACATGGATGGGGTGGGGAGGGTGGTAGGGAGACAGGGAGGAG
TAGTCCGGACCAACTGCATGGATTGCCTCGATCGGACAAACGTAGTGCAG
AGCGTCTTGGCGCGGTGGTCTCTACGGCAGCAGGTGCAGGCGTTGTTGGT
AGAGGGGGGGGCGGAGGGAGGGAAGGAGGGAGGTGATGTGTTGCAGTTGC
CGTATAAAGGGTTAGAGAAGGCCTTCCGAGCTCTGTGGGGGGGGAACGCG
GACGCGATCAGTGTCCTGTACGCAGGCACGCCGGCACTGAAAGGAGACTT
TACCCGGACGGGGAGGAGGACAAAGGTGGGGATGGTGAGCGATGGTCTGA
ACTCAGCGAAGAGGTATATGATCAACAATTTCGTGGATAATGAGAACCAG
CGGGCGGTGGAGGCGTTGTTGGGAAGGACGCGGGAGGGAGGGAAGGACGG
GTGGACTGTGTGGCCGGTGGAGGAGCGAAGGAAGGACGTAGGGAAGGTCG
GTGCGGAGGGGGTGTGGAGGAAAGTGGTGGTGGAGAAGGGGGGCCTGGAG
GGGGAGCATGAGCTTGATCGGTTGTTGGCGGATGCAGTGCCGCCTTTGAA
AGAGGGGGAGAGGGTAGGGGAGGATGGAAAGAGGGAAAAGCGCGCGAAAG
AGGGAGAGGAGGAAGGGAGGGAGGAGGGAGAGGAGGGGGGGGGGGAAGGA
GGTAATGGAAAAGGTGCAGGAGGAGGTAGATTATTATGA

Coding sequence (CDS) from alignment at scaffold_2:1232229..1234067-

>mRNA_1105 ID=mRNA_1105|Name=jgi.p|Nanoce1779_2|522647|organism=Nannochloropsis oceanica|type=CDS|length=1839bp|location=Sequence derived from alignment at scaffold_2:1232229..1234067- (Nannochloropsis oceanica)
ATGTTGGGGGATCCGGAAGAGGAGGAGCTGGAGGAGAAGAGAAAGGAGGG
AGGGGAGGAAGGCAAGGCACACGTCAAACCAGACAAGGAAAAGGATGAAT
ACGAGGACGAGGAAGATGAGGATGCAGGGCAGCTGGAGCTCCTCCGTCTG
GCGTTTCGCACACATGACCTCTACTTCTCTCACACGTGTGACGTCACCCT
TACCGCCCAACGCCGCGCCGACCTCTTCCACCCTCCTTCCCTCCTCCCCT
CTCAACCCTCCTTCCCTTCTCTCCTCCCGAAACACTCGAAGCCCAAATCT
CTCCGCCGTCGTTCTCTTCCATTGTGGCAACGGGCCGATGACCGTTTCTT
TTGGAACCGTCCTCTGCTTCAACCGTTGATTGATGCTTCGGCGGATGAAT
GGGTGTTACCCGTCATGAGTGCCTTTGTCCAGGCCGCGCGGAATGTGTCC
TTGTCATTAGGAAGGGGAAAAGAGGCCGGGAGGGAGGGAGGGACGTTGGT
GTTGGTGTCACGGAGGAGTTGTCGGAGGCAGGGAAGGAGGTTTGTGAAGA
GGGGGATCGGCGACGACGGACACACGGCCAACACGGTGGAGACGGAGCAG
ATCTTCATTACCAGGGGGGGAGGGAGGGAGGGAGGGAGGGTGGGAGGGAT
GACTTCATTTGTGCAGCTTCGAGGAAGCATACCGTTGAAGTGGTCGTCGC
CGGCGAACTTGAAATACACTCCGCCGGTGCATGTGGATGGCACGGTAGGG
GAGAGCGTGCGTGCGATGGGGAAACACTATGGGGAGATGATCGGGAGGTA
TGGGCGGAGGGAGGGGGCGAAGGACGGGGTGCCGATGGTTATGATGGTGA
ATTTGATTGATAAAACGAAGGCACAAGGACGCTTGGGGCTAGCATGGGAG
AAGATCCATGCGCTGGTGATGGCTGCTTTGAGCGACACGACCGCGTCGCG
GGCCTTCCTCCCTCCTTCCCTTCCTTCTTCCCTCCCTCCCTCTTCGGTGG
GCTTGACCTGGTTTGACTTCCATGCAGAATGCGCTCACATGCGGTGGGAC
AAGCTGGGGCTCCTTCTCCACCTCCTCCTCCCTACCCTCGAGGGGCAGGG
ATTTTTCCACATGGATGGGGTGGGGAGGGTGGTAGGGAGACAGGGAGGAG
TAGTCCGGACCAACTGCATGGATTGCCTCGATCGGACAAACGTAGTGCAG
AGCGTCTTGGCGCGGTGGTCTCTACGGCAGCAGGTGCAGGCGTTGTTGGT
AGAGGGGGGGGCGGAGGGAGGGAAGGAGGGAGGTGATGTGTTGCAGTTGC
CGTATAAAGGGTTAGAGAAGGCCTTCCGAGCTCTGTGGGGGGGGAACGCG
GACGCGATCAGTGTCCTGTACGCAGGCACGCCGGCACTGAAAGGAGACTT
TACCCGGACGGGGAGGAGGACAAAGGTGGGGATGGTGAGCGATGGTCTGA
ACTCAGCGAAGAGGTATATGATCAACAATTTCGTGGATAATGAGAACCAG
CGGGCGGTGGAGGCGTTGTTGGGAAGGACGCGGGAGGGAGGGAAGGACGG
GTGGACTGTGTGGCCGGTGGAGGAGCGAAGGAAGGACGTAGGGAAGGTCG
GTGCGGAGGGGGTGTGGAGGAAAGTGGTGGTGGAGAAGGGGGGCCTGGAG
GGGGAGCATGAGCTTGATCGGTTGTTGGCGGATGCAGTGCCGCCTTTGAA
AGAGGGGGAGAGGGTAGGGGAGGATGGAAAGAGGGAAAAGCGCGCGAAAG
AGGGAGAGGAGGAAGGGAGGGAGGAGGGAGAGGAGGGGGGGGGGGAAGGA
GGTAATGGAAAAGGTGCAGGAGGAGGTAGATTATTATGA

Synonyms

Publications