jgi.p|Nanoce1779_2|613109, mRNA_11044 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613109
Unique NamemRNA_11044
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1079
Alignment locationscaffold_70:72007..73085 +

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Properties
Property NameValue
TranscriptId613195
TrackFilteredModels2
ProteinId613109
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:72007..73085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613109gene_11044Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613109mRNA_11044-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11044CDS_11044Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11044 ID=mRNA_11044|Name=jgi.p|Nanoce1779_2|613109|organism=Nannochloropsis oceanica|type=mRNA|length=1079bp
GGGAAGGGATGGAGGAGGGTGGGGTGAAGCCGGTGTGAGAGGAGGGAGAG
AAAGGGGTGGCTGGGGGAGGAATTTTTCTTGGCTGGGAATGCGTTCCTCT
TCGTCGTCGTACCTGCACGCGGGCGGGCCAAGTGTCAAAACGCGGACGAA
GACGAGGGGCCAGCGTTTGGTGGAGGTGAGAACGGAGGGAAGGGGGGCAC
GAAATGAAACAGAGGAGAGTTTGGGGAGGAAGGAGGAAGGGAGACAGGGG
GAGACGGGTGGAAAGCTTTTATCTCCTCTTTACCTTCCTGATAGCCCTTT
TGCATCATTGGTGCACTTATGATATCGTCGTTCACTCATCCGCCTCGCTC
CCCTCCTTCGAGCCCCTTAGTGATTCCCAAATGGCCTCCTCTTCTTGGTC
ACCTGCCCCCTCTTTCCTACCTCTCGTCTAGTCATCAACTCAACCCTCTT
TTCCACTCGCTCCACTCTCAAACTAATTTAGATCATGGTCCTCCTTATCC
TCCTCGTCCTCGTCCTCGGCCTGACCATCTGGCTTAGCACTCGACCCAGA
CCCCAAGGAGCCGGCGCTCCCTCCGAGGAGAGCCCCTTCTTTCCGTCTCC
CCCTTCCTCCCCCCCGCCATCCTCTGACGCCGAGAGTGGGCCTCCTATTC
CTGGGGCGTCAGCAGGAGACGAAGAGCCTTTCCCTCCTGCTCCTATGCCA
CCTCCGCTTCCCGAGCCACCGGCTGGAGGGGGGCCGCGGCGTCTCGGCCT
ACTGCGATTCCGATATCATCTGTGAGCATCCAAAAGAGGTTATCCACAGC
ACCTGTATTAGCACGACGATCAATTGCCCCAAAAACCGCTATATAAGGAG
GCGAAGTAGCAAATGAAAAAAGAGAAAGAAGAAAGAGGGGGCTCATATAC
GGGAGGGGGCGGGTATACGAGATCGAGGTCGATTGAGAAGCAAGTAGATG
TAGATAGCACAGAGGATCGACACCACTCCCATTTTGTCCTATAAACTAGC
CAGGGAAGAAACCAACAAAATTAGGGGTCTACAGAGGCTTGCAATAATTT
GACAACAATCCAAAATAATTTTGCACCGG
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protein sequence of jgi.p|Nanoce1779_2|613109

>mRNA_11044-protein ID=mRNA_11044-protein|Name=jgi.p|Nanoce1779_2|613109|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MVLLILLVLVLGLTIWLSTRPRPQGAGAPSEESPFFPSPPSSPPPSSDAE
SGPPIPGASAGDEEPFPPAPMPPPLPEPPAGGGPRRLGLLRFRYHL*
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mRNA from alignment at scaffold_70:72007..73085+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11044 ID=mRNA_11044|Name=jgi.p|Nanoce1779_2|613109|organism=Nannochloropsis oceanica|type=mRNA|length=1079bp|location=Sequence derived from alignment at scaffold_70:72007..73085+ (Nannochloropsis oceanica)
GGGAAGGGATGGAGGAGGGTGGGGTGAAGCCGGTGTGAGAGGAGGGAGAG
AAAGGGGTGGCTGGGGGAGGAATTTTTCTTGGCTGGGAATGCGTTCCTCT
TCGTCGTCGTACCTGCACGCGGGCGGGCCAAGTGTCAAAACGCGGACGAA
GACGAGGGGCCAGCGTTTGGTGGAGGTGAGAACGGAGGGAAGGGGGGCAC
GAAATGAAACAGAGGAGAGTTTGGGGAGGAAGGAGGAAGGGAGACAGGGG
GAGACGGGTGGAAAGCTTTTATCTCCTCTTTACCTTCCTGATAGCCCTTT
TGCATCATTGGTGCACTTATGATATCGTCGTTCACTCATCCGCCTCGCTC
CCCTCCTTCGAGCCCCTTAGTGATTCCCAAATGGCCTCCTCTTCTTGGTC
ACCTGCCCCCTCTTTCCTACCTCTCGTCTAGTCATCAACTCAACCCTCTT
TTCCACTCGCTCCACTCTCAAACTAATTTAGATCATGGTCCTCCTTATCC
TCCTCGTCCTCGTCCTCGGCCTGACCATCTGGCTTAGCACTCGACCCAGA
CCCCAAGGAGCCGGCGCTCCCTCCGAGGAGAGCCCCTTCTTTCCGTCTCC
CCCTTCCTCCCCCCCGCCATCCTCTGACGCCGAGAGTGGGCCTCCTATTC
CTGGGGCGTCAGCAGGAGACGAAGAGCCTTTCCCTCCTGCTCCTATGCCA
CCTCCGCTTCCCGAGCCACCGGCTGGAGGGGGGCCGCGGCGTCTCGGCCT
ACTGCGATTCCGATATCATCTGTGAGCATCCAAAAGAGGTTATCCACAGC
ACCTGTATTAGCACGACGATCAATTGCCCCAAAAACCGCTATATAAGGAG
GCGAAGTAGCAAATGAAAAAAGAGAAAGAAGAAAGAGGGGGCTCATATAC
GGGAGGGGGCGGGTATACGAGATCGAGGTCGATTGAGAAGCAAGTAGATG
TAGATAGCACAGAGGATCGACACCACTCCCATTTTGTCCTATAAACTAGC
CAGGGAAGAAACCAACAAAATTAGGGGTCTACAGAGGCTTGCAATAATTT
GACAACAATCCAAAATAATTTTGCACCGG
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Coding sequence (CDS) from alignment at scaffold_70:72007..73085+

>mRNA_11044 ID=mRNA_11044|Name=jgi.p|Nanoce1779_2|613109|organism=Nannochloropsis oceanica|type=CDS|length=291bp|location=Sequence derived from alignment at scaffold_70:72007..73085+ (Nannochloropsis oceanica)
ATGGTCCTCCTTATCCTCCTCGTCCTCGTCCTCGGCCTGACCATCTGGCT
TAGCACTCGACCCAGACCCCAAGGAGCCGGCGCTCCCTCCGAGGAGAGCC
CCTTCTTTCCGTCTCCCCCTTCCTCCCCCCCGCCATCCTCTGACGCCGAG
AGTGGGCCTCCTATTCCTGGGGCGTCAGCAGGAGACGAAGAGCCTTTCCC
TCCTGCTCCTATGCCACCTCCGCTTCCCGAGCCACCGGCTGGAGGGGGGC
CGCGGCGTCTCGGCCTACTGCGATTCCGATATCATCTGTGA
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Synonyms
Publications