jgi.p|Nanoce1779_2|613108, mRNA_11043 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|613108
Unique Name	mRNA_11043
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	900
Alignment location	scaffold_70:70972..71871 -

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Properties


Property Name	Value
TranscriptId	613194
Track	FilteredModels2
ProteinId	613108

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_70	supercontig	scaffold_70:70972..71871 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613108	gene_11043	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613108	mRNA_11043-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11043	CDS_11043	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_70:70972..71871-
coding sequence from alignment at scaffold_70:70972..71871-

mRNA sequence

>mRNA_11043 ID=mRNA_11043|Name=jgi.p|Nanoce1779_2|613108|organism=Nannochloropsis oceanica|type=mRNA|length=900bp
CCTCCATCCAACCCAAAAGGGTCATTGGCAGCTGTCAGGTCTGTGGCTAG
CGAGTCAGCGAAGGAGAGGAGGGATGGTGCGGGGTCGAGGGAGTGGACGG
ACGCCCCCTCGCCTTCTAGGGAGGAGGTAGAGGCCATGCACTGCGTGGAG
AGGAGCTCTTCGGGCACTCGAACGTGAGGGTCAGAGGAGGGCTGGTGGTC
AGTGGAGGGGGAGGAAAAGGAGGGGGGGAATTCCACGGCCAGGTCGCCAC
GTTGGTGGTGCTGCTCTGGGAGGGTCATGAGGTTGGCGTTAATGCCGATC
GTGCCCATGGACGAGGTAGAGGAGGAAAGAGACGAAGTGGGGGCGGGGAG
GAACATGAACGGAGTGGAGGTTGAGGAGGAGGATGAGGAGGTGGAAGAAG
CGGCGCGAGGAGGAGCGGAGGCAGTTCTTGTAGGAGGGGGATTAGAAGGA
ACAGCTGGATCAGCACGTACACGACTGCCCTTGCTTCCCGTGGTGGTGCT
GCTGCCCGGGGGAAGGCCGGTGCTGCTTCCGCCTGTATCAGGGCTCTCCT
TGGTTTCCTCCCCTTTAACCTGGCCCTCCACATCATCCTTGCATGAGGAG
GACCTGGTTGATGGTAGTGGTTGTACCGGTGGTGGCATTGGCAGGGGGGA
CAGTCCCCGCGCTTGTCGCCGCTGCGCTGCGGCGCCGGTCGTGCTCGGGT
TTGTGCTACTCGTGCTGGGGGCGCTGCTTGGAGTCGGGGTGAGCTCAAAG
GAGGGTGGAGGGGAAGAAGGTCCCTTGTCATCCCCGTGACTTGCCATGTT
GGCCCGCGGAAAAGAGGGTGCGGCCTAGAGAAGACTTACAAGACTCGTGT
TGCTGCTGGAGAAGCTGCGGGCGTATTGTGTTGTCGTCGTCGGTGCCCTG

protein sequence of jgi.p|Nanoce1779_2|613108

>mRNA_11043-protein ID=mRNA_11043-protein|Name=jgi.p|Nanoce1779_2|613108|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MRLALMPIVPMDEVEEERDEVGAGRNMNGVEVEEEDEEVEEAARGGAEAV
LVGGGLEGTAGSARTRLPLLPVVVLLPGGRPVLLPPVSGLSLVSSPLTWP
STSSLHEEDLVDGSGCTGGGIGRGDSPRACRRCAAAPVVLGFVLLVLGAL
LGVGVSSKEGGGEEGPLSSP*

mRNA from alignment at scaffold_70:70972..71871-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11043 ID=mRNA_11043|Name=jgi.p|Nanoce1779_2|613108|organism=Nannochloropsis oceanica|type=mRNA|length=900bp|location=Sequence derived from alignment at scaffold_70:70972..71871- (Nannochloropsis oceanica)
CCTCCATCCAACCCAAAAGGGTCATTGGCAGCTGTCAGGTCTGTGGCTAG
CGAGTCAGCGAAGGAGAGGAGGGATGGTGCGGGGTCGAGGGAGTGGACGG
ACGCCCCCTCGCCTTCTAGGGAGGAGGTAGAGGCCATGCACTGCGTGGAG
AGGAGCTCTTCGGGCACTCGAACGTGAGGGTCAGAGGAGGGCTGGTGGTC
AGTGGAGGGGGAGGAAAAGGAGGGGGGGAATTCCACGGCCAGGTCGCCAC
GTTGGTGGTGCTGCTCTGGGAGGGTCATGAGGTTGGCGTTAATGCCGATC
GTGCCCATGGACGAGGTAGAGGAGGAAAGAGACGAAGTGGGGGCGGGGAG
GAACATGAACGGAGTGGAGGTTGAGGAGGAGGATGAGGAGGTGGAAGAAG
CGGCGCGAGGAGGAGCGGAGGCAGTTCTTGTAGGAGGGGGATTAGAAGGA
ACAGCTGGATCAGCACGTACACGACTGCCCTTGCTTCCCGTGGTGGTGCT
GCTGCCCGGGGGAAGGCCGGTGCTGCTTCCGCCTGTATCAGGGCTCTCCT
TGGTTTCCTCCCCTTTAACCTGGCCCTCCACATCATCCTTGCATGAGGAG
GACCTGGTTGATGGTAGTGGTTGTACCGGTGGTGGCATTGGCAGGGGGGA
CAGTCCCCGCGCTTGTCGCCGCTGCGCTGCGGCGCCGGTCGTGCTCGGGT
TTGTGCTACTCGTGCTGGGGGCGCTGCTTGGAGTCGGGGTGAGCTCAAAG
GAGGGTGGAGGGGAAGAAGGTCCCTTGTCATCCCCGTGACTTGCCATGTT
GGCCCGCGGAAAAGAGGGTGCGGCCTAGAGAAGACTTACAAGACTCGTGT
TGCTGCTGGAGAAGCTGCGGGCGTATTGTGTTGTCGTCGTCGGTGCCCTG

Coding sequence (CDS) from alignment at scaffold_70:70972..71871-

>mRNA_11043 ID=mRNA_11043|Name=jgi.p|Nanoce1779_2|613108|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_70:70972..71871- (Nannochloropsis oceanica)
ATGAGGTTGGCGTTAATGCCGATCGTGCCCATGGACGAGGTAGAGGAGGA
AAGAGACGAAGTGGGGGCGGGGAGGAACATGAACGGAGTGGAGGTTGAGG
AGGAGGATGAGGAGGTGGAAGAAGCGGCGCGAGGAGGAGCGGAGGCAGTT
CTTGTAGGAGGGGGATTAGAAGGAACAGCTGGATCAGCACGTACACGACT
GCCCTTGCTTCCCGTGGTGGTGCTGCTGCCCGGGGGAAGGCCGGTGCTGC
TTCCGCCTGTATCAGGGCTCTCCTTGGTTTCCTCCCCTTTAACCTGGCCC
TCCACATCATCCTTGCATGAGGAGGACCTGGTTGATGGTAGTGGTTGTAC
CGGTGGTGGCATTGGCAGGGGGGACAGTCCCCGCGCTTGTCGCCGCTGCG
CTGCGGCGCCGGTCGTGCTCGGGTTTGTGCTACTCGTGCTGGGGGCGCTG
CTTGGAGTCGGGGTGAGCTCAAAGGAGGGTGGAGGGGAAGAAGGTCCCTT
GTCATCCCCGTGA

Synonyms

Publications