jgi.p|Nanoce1779_2|613105, mRNA_11042 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613105
Unique NamemRNA_11042
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length304
Alignment locationscaffold_70:69319..69622 -

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Properties
Property NameValue
TranscriptId613191
TrackFilteredModels2
ProteinId613105
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:69319..69622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613105gene_11042Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613105mRNA_11042-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11042CDS_11042Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11042 ID=mRNA_11042|Name=jgi.p|Nanoce1779_2|613105|organism=Nannochloropsis oceanica|type=mRNA|length=304bp
GCAGTAGCAGCAGAAGAAGAAGATGCCCTTCCTGCGGCACCCGTGCCTGC
GCCTCGTCCTCGTCCTCGTCCTCCCCCTTCCTTCCACCCTCCCTCTCCCA
CGCCCTCCCCTCGGCCCGGGGCGGCGGCGCTTTTTCCGCACGGCGCCGCG
GGCGACAAACTGCCGCAGTCACTGCCGCGGCTGCAGGAGAGCAGCCCCCT
TCCTCCTCCTCCTCCTCCCCCCTCCACATCAATACTACAGGCCAAGCACA
GAGCTACAGCAACGACAGCAGCAGTGGCGGCCGTAGGAACGGCCCCCTCC
TTCA
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protein sequence of jgi.p|Nanoce1779_2|613105

>mRNA_11042-protein ID=mRNA_11042-protein|Name=jgi.p|Nanoce1779_2|613105|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MPFLRHPCLRLVLVLVLPLPSTLPLPRPPLGPGRRRFFRTAPRATNCRSH
CRGCRRAAPFLLLLLPPPHQYYRPSTELQQRQQQWRP*
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mRNA from alignment at scaffold_70:69319..69622-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11042 ID=mRNA_11042|Name=jgi.p|Nanoce1779_2|613105|organism=Nannochloropsis oceanica|type=mRNA|length=304bp|location=Sequence derived from alignment at scaffold_70:69319..69622- (Nannochloropsis oceanica)
GCAGTAGCAGCAGAAGAAGAAGATGCCCTTCCTGCGGCACCCGTGCCTGC
GCCTCGTCCTCGTCCTCGTCCTCCCCCTTCCTTCCACCCTCCCTCTCCCA
CGCCCTCCCCTCGGCCCGGGGCGGCGGCGCTTTTTCCGCACGGCGCCGCG
GGCGACAAACTGCCGCAGTCACTGCCGCGGCTGCAGGAGAGCAGCCCCCT
TCCTCCTCCTCCTCCTCCCCCCTCCACATCAATACTACAGGCCAAGCACA
GAGCTACAGCAACGACAGCAGCAGTGGCGGCCGTAGGAACGGCCCCCTCC
TTCA
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Coding sequence (CDS) from alignment at scaffold_70:69319..69622-

>mRNA_11042 ID=mRNA_11042|Name=jgi.p|Nanoce1779_2|613105|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_70:69319..69622- (Nannochloropsis oceanica)
ATGCCCTTCCTGCGGCACCCGTGCCTGCGCCTCGTCCTCGTCCTCGTCCT
CCCCCTTCCTTCCACCCTCCCTCTCCCACGCCCTCCCCTCGGCCCGGGGC
GGCGGCGCTTTTTCCGCACGGCGCCGCGGGCGACAAACTGCCGCAGTCAC
TGCCGCGGCTGCAGGAGAGCAGCCCCCTTCCTCCTCCTCCTCCTCCCCCC
TCCACATCAATACTACAGGCCAAGCACAGAGCTACAGCAACGACAGCAGC
AGTGGCGGCCGTAG
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Synonyms
Publications