jgi.p|Nanoce1779_2|613092, mRNA_11040 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613092
Unique NamemRNA_11040
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length417
Alignment locationscaffold_70:63726..64822 -

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Properties
Property NameValue
TranscriptId613178
TrackFilteredModels2
ProteinId613092
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:63726..64822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613092gene_11040Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613092mRNA_11040-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11040CDS_11040Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11040 ID=mRNA_11040|Name=jgi.p|Nanoce1779_2|613092|organism=Nannochloropsis oceanica|type=mRNA|length=417bp
AGACTGCAGCACATTAAACAGCCATGTCCTGGTTCGGATTGGGTGGATCC
AAGAAGGAGGAAGTGCCAGAGAGCAACTATGACTTTACGGCGAGCGGCTT
TGAGGAGAGCGTGGGCGGGGGAGGGGGAGGGTATGATCCGTCGTTGGGAG
GAGGCGTGGGCAGTGGTGGGAATATGGGGCAATTGGAGGAGCTCGTGATG
GCGGAGCAGCAGAAAGCTTTGGTGCAGTCCGTCATTGCCAGGTTGACTGA
GATGGCCTTTGAGAATTGTGTTGCCAAGCCTGCTTCTGCTCTGTCCAGTT
CAGAGCAGGGCTGCATAAAGGCGACGGTGGCCAAGTATCTGGACACGTCC
GAGTTCGTCCTGGGCCGAGTCCAACGCTCGGCCCAACGGGGACAGAGCGG
GGGGCACTAGGGCGGGC
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protein sequence of jgi.p|Nanoce1779_2|613092

>mRNA_11040-protein ID=mRNA_11040-protein|Name=jgi.p|Nanoce1779_2|613092|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MSWFGLGGSKKEEVPESNYDFTASGFEESVGGGGGGYDPSLGGGVGSGGN
MGQLEELVMAEQQKALVQSVIARLTEMAFENCVAKPASALSSSEQGCIKA
TVAKYLDTSEFVLGRVQRSAQRGQSGGH*
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mRNA from alignment at scaffold_70:63726..64822-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11040 ID=mRNA_11040|Name=jgi.p|Nanoce1779_2|613092|organism=Nannochloropsis oceanica|type=mRNA|length=1097bp|location=Sequence derived from alignment at scaffold_70:63726..64822- (Nannochloropsis oceanica)
AGACTGCAGCACATTAAACAGCCATGTCCTGGTTCGGATTGGGTGGATCC
AAGAAGGAGGAAGTGCCAGAGAGCAACTATGACTTTACGGCGAGCGGCTT
TGAGGAGAGCGTGGGCGGGGGAGGGGGAGGGTATGATCCGTCGTTGGGAG
GAGGTGAGTGTGTGGGCCAAAGAAAGGGTTGAGAGGATGGGGAAAGGGAT
AGCCAATATAGTTGGGCATGTGCGAAAAGGAAAATGTAGGTATGGAGGAT
TGTGGAGGGCAGGGGCTGAAGTGCGAGTTGCGACGGCCGGATAGAAGAAA
AAATATCATAGGACACGGCACCAGGGGGTTTAACCTTGCTTGTGGGAATC
CTGGGCCGCATATGAGAGAGCAACGACGTACAGGACATGACAGCAGAACG
CCCGACTATTGGTCCGCGCTGCTTGATATATATATATATTTATATTTACA
TAAATATATAAACTCGGCAAATTCGGATATATATATATCCGAATTCGCTT
CTTGCTTCTTTCCCCTTCCTCCCTCATCGTTCCCTCAATTCCTCTTAGGC
GTGGGCAGTGGTGGGAATATGGGGCAATTGGAGGAGCTCGTGATGGCGGA
GCAGCAGAAAGCTTTGGTGCAGTCCGTCATTGCCAGGTTGACTGAGATGG
CCTTTGAGAATTGTGTTGCCAAGCCTGCTTCTGCTCTGTCCAGTTCAGAG
CAGGGCTGCATAAAGGTAAGGGGGGAGGAAGGAGGGAGTGAGGGAGGCAA
GAAGTGAGGAAGGAAGGAAGGGGATTTTTTTCATGTTATGAACTTCATAA
TGTCCACTAAATGCCTTTCCATCATTCTCATCAAGCGCCCGGAATCACAA
TGTCTGTACTTCTCCCTCCCTCCCTCCCTTCCTCCCTCAGTTCGTCTTCT
ATGTGTCCATCGTCTCAAAGATTTATAATCATCACACACATCCTTCCCCA
ATCACTCATCTCTCTCTCTCGCTCTCTCACACCCTTCCTCCCTCGTTGAG
GCGACGGTGGCCAAGTATCTGGACACGTCCGAGTTCGTCCTGGGCCGAGT
CCAACGCTCGGCCCAACGGGGACAGAGCGGGGGGCACTAGGGCGGGC
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Coding sequence (CDS) from alignment at scaffold_70:63726..64822-

>mRNA_11040 ID=mRNA_11040|Name=jgi.p|Nanoce1779_2|613092|organism=Nannochloropsis oceanica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_70:63726..64822- (Nannochloropsis oceanica)
GCGACGGTGGCCAAGTATCTGGACACGTCCGAGTTCGTCCTGGGCCGAGT
CCAACGCTCGGCCCAACGGGGACAGAGCGGGGGGCACTAGGCGTGGGCAG
TGGTGGGAATATGGGGCAATTGGAGGAGCTCGTGATGGCGGAGCAGCAGA
AAGCTTTGGTGCAGTCCGTCATTGCCAGGTTGACTGAGATGGCCTTTGAG
AATTGTGTTGCCAAGCCTGCTTCTGCTCTGTCCAGTTCAGAGCAGGGCTG
CATAAAGATGTCCTGGTTCGGATTGGGTGGATCCAAGAAGGAGGAAGTGC
CAGAGAGCAACTATGACTTTACGGCGAGCGGCTTTGAGGAGAGCGTGGGC
GGGGGAGGGGGAGGGTATGATCCGTCGTTGGGAGGAGGCGACGGTGGCCA
AGTATCTGGACACGTCCGAGTTCGTCCTGGGCCGAGTCCAACGCTCGGCC
CAACGGGGACAGAGCGGGGGGCACTAGGCGTGGGCAGTGGTGGGAATATG
GGGCAATTGGAGGAGCTCGTGATGGCGGAGCAGCAGAAAGCTTTGGTGCA
GTCCGTCATTGCCAGGTTGACTGAGATGGCCTTTGAGAATTGTGTTGCCA
AGCCTGCTTCTGCTCTGTCCAGTTCAGAGCAGGGCTGCATAAAGATGTCC
TGGTTCGGATTGGGTGGATCCAAGAAGGAGGAAGTGCCAGAGAGCAACTA
TGACTTTACGGCGAGCGGCTTTGAGGAGAGCGTGGGCGGGGGAGGGGGAG
GGTATGATCCGTCGTTGGGAGGAGGCGACGGTGGCCAAGTATCTGGACAC
GTCCGAGTTCGTCCTGGGCCGAGTCCAACGCTCGGCCCAACGGGGACAGA
GCGGGGGGCACTAGGCGTGGGCAGTGGTGGGAATATGGGGCAATTGGAGG
AGCTCGTGATGGCGGAGCAGCAGAAAGCTTTGGTGCAGTCCGTCATTGCC
AGGTTGACTGAGATGGCCTTTGAGAATTGTGTTGCCAAGCCTGCTTCTGC
TCTGTCCAGTTCAGAGCAGGGCTGCATAAAGATGTCCTGGTTCGGATTGG
GTGGATCCAAGAAGGAGGAAGTGCCAGAGAGCAACTATGACTTTACGGCG
AGCGGCTTTGAGGAGAGCGTGGGCGGGGGAGGGGGAGGGTATGATCCGTC
GTTGGGAGGAG
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Synonyms
Publications