jgi.p|Nanoce1779_2|575329, mRNA_1104 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575329
Unique Name	mRNA_1104
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1225
Alignment location	scaffold_2:1230372..1231759 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575415
Track	FilteredModels2
ProteinId	575329

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1230372..1231759 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575329	gene_1104	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575329	mRNA_1104-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1104	CDS_1104	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1230372..1231759+
coding sequence from alignment at scaffold_2:1230372..1231759+

mRNA sequence

>mRNA_1104 ID=mRNA_1104|Name=jgi.p|Nanoce1779_2|575329|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp
ACAGTAAGATGCCATCACCGACACAGCCACGGCGGTACAATTTGTCCTGG
ACATGCCTAATACTAGGGTTAGTCACGTCCCTCCCCCAGCCTTCGATCTG
CTTTGCTCCGCGCGCGTGTGCGGGTGCTTCCTCCCGCGGCCGGACGCCCC
TTCCGACTGCGACCTATGCCGCCACGCACGCCTCTACCAGCTCAAGTACC
TGGCACCCGCTCCATCCCCAACTGACTTCCAGTCCCTTGTCCTTTCTCTT
GTCCACCTCACTTCATAAAGCTGCCTTTAAGATCAGCCTCCTCTTTCTTG
GTGGCTGCAGCGGCGCTTTTGGACCCCTCCTCACCTCCCCCCTCCAGGCC
TCGGCTGCCGAACCGTCCCCCGCGCAGATCCAGCAAGTTCAACGTGCCTT
TCAAGCGTTCAATGACCGAGACTTACGCCTGGCCGAATCTTTGTTCGATA
AGTCGGTGGCTGTTTGGGAGAAATTGGAACGGCCCAGAGACGAGATGGCA
GCGTTGATCAAAGCCCGTGGGAACGTTAAAGTGGACCTCAAGAAATTTGA
TGCGGCCATAGTTGATTTTGACAGGGTTTTGACGATCATGAGCGTGGACG
GGACCAAGACGGACGGAAGTGGGGAAGCGGCTTATTCAGAGTATCCAGAT
CTGTTCGTGCAGCGGGGCTTGGCGAGGGAGGGACTGAGCGAGTGGCAAGC
CGCCGTTGAGGACTACAGCCAAGCCATCTCTCTCTGGGGCGGGGGGCGAG
GAGAGGGAATCAATCCCTTTGTGCTCACTTTTCGTGGGAATGTATTGACG
AGGCTGGGGAAGTACAAAGATGCCTTGCAGGACTTCGAGGCGTCTGCGGA
TTTATTTCTGGCGTCGAGAGATGAGGAGGATGCGTTGCTGGCCCGGGCGA
ACGCGGCGTTGACGTACTATGAACTGGGGTATGAGGAATCTGCATTAAAG
TTAATGAATGACGTGATCAGGCGACAGCCCGGCTTCACGGATATGCACGT
GGCGTTGGCAGCCCATGCGTGGGGGGAGGGGAAGCTTGGGTTGGCGGAAA
AGGAATGGAGGTTTGCATGTGAGAACACGAGTACGGGGTGTGCGGCTTAT
AGAGATTTGGATTTTGTTCAACGGATACGGAGGTGGCCTCCTACGCTGGT
GACGAAGCTCGGTGCGTTTTTGGGGAAGAGCAAGGTGGTGGCGGAGGGGG
GGAGTAGCGTATTGAGATGAAGGAG

protein sequence of jgi.p|Nanoce1779_2|575329

>mRNA_1104-protein ID=mRNA_1104-protein|Name=jgi.p|Nanoce1779_2|575329|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MPSPTQPRRYNLSWTCLILGLVTSLPQPSICFAPRACAGASSRGRTPLPT
ATYAATHASTSSSTWHPLHPQLTSSPLSFLLSTSLHKAAFKISLLFLGGC
SGAFGPLLTSPLQASAAEPSPAQIQQVQRAFQAFNDRDLRLAESLFDKSV
AVWEKLERPRDEMAALIKARGNVKVDLKKFDAAIVDFDRVLTIMSVDGTK
TDGSGEAAYSEYPDLFVQRGLAREGLSEWQAAVEDYSQAISLWGGGRGEG
INPFVLTFRGNVLTRLGKYKDALQDFEASADLFLASRDEEDALLARANAA
LTYYELGYEESALKLMNDVIRRQPGFTDMHVALAAHAWGEGKLGLAEKEW
RFACENTSTGCAAYRDLDFVQRIRRWPPTLVTKLGAFLGKSKVVAEGGSS
VLR*

mRNA from alignment at scaffold_2:1230372..1231759+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1104 ID=mRNA_1104|Name=jgi.p|Nanoce1779_2|575329|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp|location=Sequence derived from alignment at scaffold_2:1230372..1231759+ (Nannochloropsis oceanica)
ACAGTAAGATGCCATCACCGACACAGCCACGGCGGTACAATTTGTCCTGG
ACATGCCTAATACTAGGGTTAGTCACGTCCCTCCCCCAGCCTTCGATCTG
CTTTGCTCCGCGCGCGTGTGCGGGTGCTTCCTCCCGCGGCCGGACGCCCC
TTCCGACTGCGACCTATGCCGCCACGCACGCCTCTACCAGCTCAAGTACC
TGGCACCCGCTCCATCCCCAACTGACTTCCAGTCCCTTGTCCTTTCTCTT
GTCCACCTCACTTCATAAAGCTGCCTTTAAGATCAGCCTCCTCTTTCTTG
GTGGCTGCAGCGGCGCTTTTGGACCCCTCCTCACCTCCCCCCTCCAGGCC
TCGGCTGCCGAACCGTCCCCCGCGCAGATCCAGCAAGTTCAACGTGCCTT
TCAAGCGTTCAATGACCGAGACTTACGCCTGGCCGAATCTTTGTTCGATA
AGTCGGTGGCTGTTTGGGAGAAATTGGAACGGCCCAGAGACGAGATGGCA
GCGTTGATCAAAGCCCGTGGGAACGTTAAAGTGGACCTCAAGAAATTTGA
TGCGGCCATAGTTGATTTTGACAGGGTTTTGACGATCATGAGCGTGGACG
GGACCAAGACGGACGGAAGTGGGGAAGCGGCTTATTCAGAGTATCCAGAT
CTGTTCGTGCAGCGGGGCTTGGCGAGGGTACGTCAATGGGGGTAGGAGAG
GAAGGGAAACATGATGGTCGAGAGAGAAGGATGGATGGCAAGGATCGCAT
TTCTTCATGAGACTGTCTATTTCCCTACATTTGGAGCGATCATTCACCCC
TTCTCTCCTCCTTCATTCTGGCCCATGCTACGACTGACAGGAGGGACTGA
GCGAGTGGCAAGCCGCCGTTGAGGACTACAGCCAAGCCATCTCTCTCTGG
GGCGGGGGGCGAGGAGAGGGAATCAATCCCTTTGTGCTCACTTTTCGTGG
GAATGTATTGACGAGGCTGGGGAAGTACAAAGATGCCTTGCAGGACTTCG
AGGCGTCTGCGGATTTATTTCTGGCGTCGAGAGATGAGGAGGATGCGTTG
CTGGCCCGGGCGAACGCGGCGTTGACGTACTATGAACTGGGGTATGAGGA
ATCTGCATTAAAGTTAATGAATGACGTGATCAGGCGACAGCCCGGCTTCA
CGGATATGCACGTGGCGTTGGCAGCCCATGCGTGGGGGGAGGGGAAGCTT
GGGTTGGCGGAAAAGGAATGGAGGTTTGCATGTGAGAACACGAGTACGGG
GTGTGCGGCTTATAGAGATTTGGATTTTGTTCAACGGATACGGAGGTGGC
CTCCTACGCTGGTGACGAAGCTCGGTGCGTTTTTGGGGAAGAGCAAGGTG
GTGGCGGAGGGGGGGAGTAGCGTATTGAGATGAAGGAG

Coding sequence (CDS) from alignment at scaffold_2:1230372..1231759+

>mRNA_1104 ID=mRNA_1104|Name=jgi.p|Nanoce1779_2|575329|organism=Nannochloropsis oceanica|type=CDS|length=2424bp|location=Sequence derived from alignment at scaffold_2:1230372..1231759+ (Nannochloropsis oceanica)
ATGCCATCACCGACACAGCCACGGCGGTACAATTTGTCCTGGACATGCCT
AATACTAGGGTTAGTCACGTCCCTCCCCCAGCCTTCGATCTGCTTTGCTC
CGCGCGCGTGTGCGGGTGCTTCCTCCCGCGGCCGGACGCCCCTTCCGACT
GCGACCTATGCCGCCACGCACGCCTCTACCAGCTCAAGTACCTGGCACCC
GCTCCATCCCCAACTGACTTCCAGTCCCTTGTCCTTTCTCTTGTCCACCT
CACTTCATAAAGCTGCCTTTAAGATCAGCCTCCTCTTTCTTGGTGGCTGC
AGCGGCGCTTTTGGACCCCTCCTCACCTCCCCCCTCCAGGCCTCGGCTGC
CGAACCGTCCCCCGCGCAGATCCAGCAAGTTCAACGTGCCTTTCAAGCGT
TCAATGACCGAGACTTACGCCTGGCCGAATCTTTGTTCGATAAGTCGGTG
GCTGTTTGGGAGAAATTGGAACGGCCCAGAGACGAGATGGCAGCGTTGAT
CAAAGCCCGTGGGAACGTTAAAGTGGACCTCAAGAAATTTGATGCGGCCA
TAGTTGATTTTGACAGGGTTTTGACGATCATGAGCGTGGACGGGACCAAG
ACGGACGGAAGTGGGGAAGCGGCTTATTCAGAGTATCCAGATCTGTTCGT
GCAGCGGGGCTTGGCGAGGGAGGGACTGAGCGAGTGGCAAGCCGCCGTTG
AGGACTACAGCCAAGCCATCTCTCTCTGGGGCGGGGGGCGAGGAGAGGGA
ATCAATCCCTTTGTGCTCACTTTTCGTGGGAATGTATTGACGAGGCTGGG
GAAGTACAAAGATGCCTTGCAGGACTTCGAGGCGTCTGCGGATTTATTTC
TGGCGTCGAGAGATGAGGAGGATGCGTTGCTGGCCCGGGCGAACGCGGCG
TTGACGTACTATGAACTGGGGTATGAGGAATCTGCATTAAAGTTAATGAA
TGACGTGATCAGGCGACAGCCCGGCTTCACGGATATGCACGTGGCGTTGG
CAGCCCATGCGTGGGGGGAGGGGAAGCTTGGGTTGGCGGAAAAGGAATGG
AGGTTTGCATGTGAGAACACGAGTACGGGGTGTGCGGCTTATAGAGATTT
GGATTTTGTTCAACGGATACGGAGGTGGCCTCCTACGCTGGTGACGAAGC
TCGGTGCGTTTTTGGGGAAGAGCAAGGTGGTGGCGGAGGGGGGGAGTAGC
GTATTGAGATGAATGCCATCACCGACACAGCCACGGCGGTACAATTTGTC
CTGGACATGCCTAATACTAGGGTTAGTCACGTCCCTCCCCCAGCCTTCGA
TCTGCTTTGCTCCGCGCGCGTGTGCGGGTGCTTCCTCCCGCGGCCGGACG
CCCCTTCCGACTGCGACCTATGCCGCCACGCACGCCTCTACCAGCTCAAG
TACCTGGCACCCGCTCCATCCCCAACTGACTTCCAGTCCCTTGTCCTTTC
TCTTGTCCACCTCACTTCATAAAGCTGCCTTTAAGATCAGCCTCCTCTTT
CTTGGTGGCTGCAGCGGCGCTTTTGGACCCCTCCTCACCTCCCCCCTCCA
GGCCTCGGCTGCCGAACCGTCCCCCGCGCAGATCCAGCAAGTTCAACGTG
CCTTTCAAGCGTTCAATGACCGAGACTTACGCCTGGCCGAATCTTTGTTC
GATAAGTCGGTGGCTGTTTGGGAGAAATTGGAACGGCCCAGAGACGAGAT
GGCAGCGTTGATCAAAGCCCGTGGGAACGTTAAAGTGGACCTCAAGAAAT
TTGATGCGGCCATAGTTGATTTTGACAGGGTTTTGACGATCATGAGCGTG
GACGGGACCAAGACGGACGGAAGTGGGGAAGCGGCTTATTCAGAGTATCC
AGATCTGTTCGTGCAGCGGGGCTTGGCGAGGGAGGGACTGAGCGAGTGGC
AAGCCGCCGTTGAGGACTACAGCCAAGCCATCTCTCTCTGGGGCGGGGGG
CGAGGAGAGGGAATCAATCCCTTTGTGCTCACTTTTCGTGGGAATGTATT
GACGAGGCTGGGGAAGTACAAAGATGCCTTGCAGGACTTCGAGGCGTCTG
CGGATTTATTTCTGGCGTCGAGAGATGAGGAGGATGCGTTGCTGGCCCGG
GCGAACGCGGCGTTGACGTACTATGAACTGGGGTATGAGGAATCTGCATT
AAAGTTAATGAATGACGTGATCAGGCGACAGCCCGGCTTCACGGATATGC
ACGTGGCGTTGGCAGCCCATGCGTGGGGGGAGGGGAAGCTTGGGTTGGCG
GAAAAGGAATGGAGGTTTGCATGTGAGAACACGAGTACGGGGTGTGCGGC
TTATAGAGATTTGGATTTTGTTCAACGGATACGGAGGTGGCCTCCTACGC
TGGTGACGAAGCTCGGTGCGTTTTTGGGGAAGAGCAAGGTGGTGGCGGAG
GGGGGGAGTAGCGTATTGAGATGA

Synonyms

Publications