jgi.p|Nanoce1779_2|534213, mRNA_11038 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|534213
Unique Name	mRNA_11038
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	882
Alignment location	scaffold_70:56964..58891 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	534299
Track	FilteredModels2
ProteinId	534213

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_70	supercontig	scaffold_70:56964..58891 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|534213	gene_11038	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|534213	mRNA_11038-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11038	CDS_11038	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_70:56964..58891+
coding sequence from alignment at scaffold_70:56964..58891+

mRNA sequence

>mRNA_11038 ID=mRNA_11038|Name=jgi.p|Nanoce1779_2|534213|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
ATGTCATTCCCGCCTTCCATCCTAACTCCTTACAAGGCAGGCCTCTTCAG
TGGCAAGGGTGTGATCGTCACAGGTGGAGGCACTGGCCTGGGGTACGCAA
TAGCCCGGGAACTTGTATCTCTAGGCGCCCAAGTCGTAATAGCTGCCCGC
CGGTTGGACATCCTGGAGCAAGCCGCTGCTGAACTTAATAAGGAAAGCGG
CAAGACAGGGGGAAAAGTCCATGTCTGCCGGTGCAATGTTCGGAGCGAGG
AGGACATTCAAGAGCTTGTGACCTTCGCTTTGGAGAAAATGGGGAGGATC
GACGGCCTGGTCAACAACGCGGGCGGGCAATTCGTGAGCCCCGTAGAGAA
TATCAGTGCCCGTGGCTTCAAGGCTGTGGTTGAGACAAACTTGCTCTCAT
GTTTCATGCTTTCCAAGGAGGTCTATAATCGGTGGTACGGCAGCGGTAGT
GGCTCCATCGTGAACATCATCCTCGCCAACAAGAATGGGTTTCCCATGAT
GGCACACAGCGGCGCCGCACGGGCTGGCGTAGAGAACCTGACCAAGAGCA
TGGCCTTGGAGTGGGTGGGTAAAGGTGTTCGCGTCAACTGCGTGGCTCCC
GGCATCGTCTACACAGAAAGTGGCTTTGCCAACTATGGCGAAATGGCCAC
CGCCTTTCTCGCTACCGTCCTTCCTGCGATTCCAGCCCATCGGTGCGGCA
CCGCGGAGGAAGTGAGCAGCCTCGTCCTTTTCCTCCTCTCGGACGCGGCC
GTATACGTTACCGGCCAAAATATAGGGGTGGATGGAGGGATGGGCCAGAG
CACGATCCCTCTGCGACCACAAGACCACGAAGCGGCTCTATTGCCTATAT
ACGGAGAGTTGCCATCGAAGGCAAAGCTGTAG

protein sequence of jgi.p|Nanoce1779_2|534213

>mRNA_11038-protein ID=mRNA_11038-protein|Name=jgi.p|Nanoce1779_2|534213|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MSFPPSILTPYKAGLFSGKGVIVTGGGTGLGYAIARELVSLGAQVVIAAR
RLDILEQAAAELNKESGKTGGKVHVCRCNVRSEEDIQELVTFALEKMGRI
DGLVNNAGGQFVSPVENISARGFKAVVETNLLSCFMLSKEVYNRWYGSGS
GSIVNIILANKNGFPMMAHSGAARAGVENLTKSMALEWVGKGVRVNCVAP
GIVYTESGFANYGEMATAFLATVLPAIPAHRCGTAEEVSSLVLFLLSDAA
VYVTGQNIGVDGGMGQSTIPLRPQDHEAALLPIYGELPSKAKL*

mRNA from alignment at scaffold_70:56964..58891+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11038 ID=mRNA_11038|Name=jgi.p|Nanoce1779_2|534213|organism=Nannochloropsis oceanica|type=mRNA|length=1928bp|location=Sequence derived from alignment at scaffold_70:56964..58891+ (Nannochloropsis oceanica)
ATGTCATTCCCGCCTTCCATCCTAACTCCTTACAAGGCAGGCCTCTTCAG
TGGCAAGGGTGTGATCGTCACAGGTGGAGGCACTGGCCTGGGGTACGCAA
TAGGTAAGTCAGGATCATGCATCCCATTCAGCTACGATGGGCAAAACAGT
GACGTGCGGCGACGAGAAAGGTGGAGACAAAGCGTGTAGCCTTTGTACTA
CTACTACTGCTACTGTTGCGGCTACTACTACTACAGTCCAGATAGACAGA
ATGGAGGGCCGCGAGAGCGAGGAACGATCTAGGGCTACTGCTTGCGCTGG
CAACTTCAAAGGACAAACAGGCAAAGGTCCAGGAGAAGAACAGATTTGGT
CTGCTGCTGCGGCTGGTAGAGATGGTGTTGCTACTACTGCTGCTGCTGAT
GCAATTGCGGTTGTAATTACGCCCTCCCGGCTTCTGATGGTCGACAGACA
GGAGTAAAAATGAAGGAGGGAGAAGGAAGAATTTTCGCCATGACGATGAC
GGGGACGACTACTACGTAATAATTTATTGCGTGGCATTTCCCTACTTCTT
TTCCGGCTCTGGGTGTCGGTTTTCTTTGTCACTGTCTAACATCCCATCAC
ATCTCTATTTTCCCTACCATATCCTCCTATTTCCCCCACACTCTCTCCAG
CCCGGGAACTTGTATCTCTAGGCGCCCAAGTCGTAATAGCTGCCCGCCGG
TTGGACATCCTGGAGCAAGCCGCTGCTGAACTTAATAAGGAAAGCGGCAA
GACAGGGGGAAAAGTCCATGTCTGCCGGTGCAATGTTCGGAGCGAGGAGG
ACATTCAAGAGCTTGTGACCTTCGCTTTGGAGAAAATGGGGAGGATCGAC
GGCCTGGTCAACAACGCGGGCGGGCAATTCGTGAGCCCCGTAGAGAATAT
CAGTGCCCGTGGCTTCAAGGCTGTGGTTGAGACAAACTTGCTCTCATGTT
TCATGCTTTCCAAGGAGGTCTATAATCGGTGGTACGGGTGGAGGAAGGGT
GGGGAGGCGGGGTGCTAATGGGAGAAAGGAGGACAATGGGAGGGGAGATG
TGTGTAAAACTGCTAAAGCTTGAGAAGATAAAATATACTGCTGTCTATCT
GCCTCCCTCCTTGACTGTCTTTCTCTCTAAACCCCCTCCCTATCTCCGCC
AGTCAATTTATTCAACATCACTCATGTTATCTCTCTTCCTCACAGGTGGA
GTCAACAGGAAGGCAGCAGCGGTAGTGGCTCCATCGTGAACATCATCCTC
GCCAACAAGAATGGGTTTCCCATGATGGCACACAGGTGGGTCCTTTACGT
CTCTTTCGCGCATTCTTTTTGGTCCATTCATTCTTTTCTCATTTTCCTCG
GCGTCTCTCAAGAGTTGAGGCCAGAAAAGCATTTGTGGGCAAAAACAATC
CTCTTCTTAGTTCTTCCCCCCCCCTCCTTCAATTCAGCGGCGCCGCACGG
GCTGGCGTAGAGAACCTGACCAAGAGCATGGCCTTGGAGTGGGTGGGTAA
AGGTGTTCGCGTCAACTGCGTGGCTCCCGGCATCGTCTACACAGAAAGTG
GCTTTGCCAACTATGGGTATGTGTATATTTTTGTCCTCCATGCCTCCATC
CCCGTCTGATGAAACTTTCTTTCTTTTCCCCTTGCTCAACATACACTTAT
GCATTGCTCTTTCTGAAACCGATCATCTCTCAAGCGAAATGGCCACCGCC
TTTCTCGCTACCGTCCTTCCTGCGATTCCAGCCCATCGGTGCGGCACCGC
GGAGGAAGTGAGCAGCCTCGTCCTTTTCCTCCTCTCGGACGCGGCCGTAT
ACGTTACCGGCCAAAATATAGGGGTGGATGGAGGGATGGGCCAGAGCACG
ATCCCTCTGCGACCACAAGACCACGAAGCGGCTCTATTGCCTATATACGG
AGAGTTGCCATCGAAGGCAAAGCTGTAG

Coding sequence (CDS) from alignment at scaffold_70:56964..58891+

>mRNA_11038 ID=mRNA_11038|Name=jgi.p|Nanoce1779_2|534213|organism=Nannochloropsis oceanica|type=CDS|length=4410bp|location=Sequence derived from alignment at scaffold_70:56964..58891+ (Nannochloropsis oceanica)
ATGTCATTCCCGCCTTCCATCCTAACTCCTTACAAGGCAGGCCTCTTCAG
TGGCAAGGGTGTGATCGTCACAGGTGGAGGCACTGGCCTGGGGTACGCAA
TAGCCCGGGAACTTGTATCTCTAGGCGCCCAAGTCGTAATAGCTGCCCGC
CGGTTGGACATCCTGGAGCAAGCCGCTGCTGAACTTAATAAGGAAAGCGG
CAAGACAGGGGGAAAAGTCCATGTCTGCCGGTGCAATGTTCGGAGCGAGG
AGGACATTCAAGAGCTTGTGACCTTCGCTTTGGAGAAAATGGGGAGGATC
GACGGCCTGGTCAACAACGCGGGCGGGCAATTCGTGAGCCCCGTAGAGAA
TATCAGTGCCCGTGGCTTCAAGGCTGTGGTTGAGACAAACTTGCTCTCAT
GTTTCATGCTTTCCAAGGAGGTCTATAATCGGTGGTACGGCAGCGGTAGT
GGCTCCATCGTGAACATCATCCTCGCCAACAAGAATGGGTTTCCCATGAT
GGCACACAGCGGCGCCGCACGGGCTGGCGTAGAGAACCTGACCAAGAGCA
TGGCCTTGGAGTGGGTGGGTAAAGGTGTTCGCGTCAACTGCGTGGCTCCC
GGCATCGTCTACACAGAAAGTGGCTTTGCCAACTATGGCGAAATGGCCAC
CGCCTTTCTCGCTACCGTCCTTCCTGCGATTCCAGCCCATCGGTGCGGCA
CCGCGGAGGAAGTGAGCAGCCTCGTCCTTTTCCTCCTCTCGGACGCGGCC
GTATACGTTACCGGCCAAAATATAGGGGTGGATGGAGGGATGGGCCAGAG
CACGATCCCTCTGCGACCACAAGACCACGAAGCGGCTCTATTGCCTATAT
ACGGAGAGTTGCCATCGAAGGCAAAGCTGTAGATGTCATTCCCGCCTTCC
ATCCTAACTCCTTACAAGGCAGGCCTCTTCAGTGGCAAGGGTGTGATCGT
CACAGGTGGAGGCACTGGCCTGGGGTACGCAATAGCCCGGGAACTTGTAT
CTCTAGGCGCCCAAGTCGTAATAGCTGCCCGCCGGTTGGACATCCTGGAG
CAAGCCGCTGCTGAACTTAATAAGGAAAGCGGCAAGACAGGGGGAAAAGT
CCATGTCTGCCGGTGCAATGTTCGGAGCGAGGAGGACATTCAAGAGCTTG
TGACCTTCGCTTTGGAGAAAATGGGGAGGATCGACGGCCTGGTCAACAAC
GCGGGCGGGCAATTCGTGAGCCCCGTAGAGAATATCAGTGCCCGTGGCTT
CAAGGCTGTGGTTGAGACAAACTTGCTCTCATGTTTCATGCTTTCCAAGG
AGGTCTATAATCGGTGGTACGGCAGCGGTAGTGGCTCCATCGTGAACATC
ATCCTCGCCAACAAGAATGGGTTTCCCATGATGGCACACAGCGGCGCCGC
ACGGGCTGGCGTAGAGAACCTGACCAAGAGCATGGCCTTGGAGTGGGTGG
GTAAAGGTGTTCGCGTCAACTGCGTGGCTCCCGGCATCGTCTACACAGAA
AGTGGCTTTGCCAACTATGGCGAAATGGCCACCGCCTTTCTCGCTACCGT
CCTTCCTGCGATTCCAGCCCATCGGTGCGGCACCGCGGAGGAAGTGAGCA
GCCTCGTCCTTTTCCTCCTCTCGGACGCGGCCGTATACGTTACCGGCCAA
AATATAGGGGTGGATGGAGGGATGGGCCAGAGCACGATCCCTCTGCGACC
ACAAGACCACGAAGCGGCTCTATTGCCTATATACGGAGAGTTGCCATCGA
AGGCAAAGCTGTAGATGTCATTCCCGCCTTCCATCCTAACTCCTTACAAG
GCAGGCCTCTTCAGTGGCAAGGGTGTGATCGTCACAGGTGGAGGCACTGG
CCTGGGGTACGCAATAGCCCGGGAACTTGTATCTCTAGGCGCCCAAGTCG
TAATAGCTGCCCGCCGGTTGGACATCCTGGAGCAAGCCGCTGCTGAACTT
AATAAGGAAAGCGGCAAGACAGGGGGAAAAGTCCATGTCTGCCGGTGCAA
TGTTCGGAGCGAGGAGGACATTCAAGAGCTTGTGACCTTCGCTTTGGAGA
AAATGGGGAGGATCGACGGCCTGGTCAACAACGCGGGCGGGCAATTCGTG
AGCCCCGTAGAGAATATCAGTGCCCGTGGCTTCAAGGCTGTGGTTGAGAC
AAACTTGCTCTCATGTTTCATGCTTTCCAAGGAGGTCTATAATCGGTGGT
ACGGCAGCGGTAGTGGCTCCATCGTGAACATCATCCTCGCCAACAAGAAT
GGGTTTCCCATGATGGCACACAGCGGCGCCGCACGGGCTGGCGTAGAGAA
CCTGACCAAGAGCATGGCCTTGGAGTGGGTGGGTAAAGGTGTTCGCGTCA
ACTGCGTGGCTCCCGGCATCGTCTACACAGAAAGTGGCTTTGCCAACTAT
GGCGAAATGGCCACCGCCTTTCTCGCTACCGTCCTTCCTGCGATTCCAGC
CCATCGGTGCGGCACCGCGGAGGAAGTGAGCAGCCTCGTCCTTTTCCTCC
TCTCGGACGCGGCCGTATACGTTACCGGCCAAAATATAGGGGTGGATGGA
GGGATGGGCCAGAGCACGATCCCTCTGCGACCACAAGACCACGAAGCGGC
TCTATTGCCTATATACGGAGAGTTGCCATCGAAGGCAAAGCTGTAGATGT
CATTCCCGCCTTCCATCCTAACTCCTTACAAGGCAGGCCTCTTCAGTGGC
AAGGGTGTGATCGTCACAGGTGGAGGCACTGGCCTGGGGTACGCAATAGC
CCGGGAACTTGTATCTCTAGGCGCCCAAGTCGTAATAGCTGCCCGCCGGT
TGGACATCCTGGAGCAAGCCGCTGCTGAACTTAATAAGGAAAGCGGCAAG
ACAGGGGGAAAAGTCCATGTCTGCCGGTGCAATGTTCGGAGCGAGGAGGA
CATTCAAGAGCTTGTGACCTTCGCTTTGGAGAAAATGGGGAGGATCGACG
GCCTGGTCAACAACGCGGGCGGGCAATTCGTGAGCCCCGTAGAGAATATC
AGTGCCCGTGGCTTCAAGGCTGTGGTTGAGACAAACTTGCTCTCATGTTT
CATGCTTTCCAAGGAGGTCTATAATCGGTGGTACGGCAGCGGTAGTGGCT
CCATCGTGAACATCATCCTCGCCAACAAGAATGGGTTTCCCATGATGGCA
CACAGCGGCGCCGCACGGGCTGGCGTAGAGAACCTGACCAAGAGCATGGC
CTTGGAGTGGGTGGGTAAAGGTGTTCGCGTCAACTGCGTGGCTCCCGGCA
TCGTCTACACAGAAAGTGGCTTTGCCAACTATGGCGAAATGGCCACCGCC
TTTCTCGCTACCGTCCTTCCTGCGATTCCAGCCCATCGGTGCGGCACCGC
GGAGGAAGTGAGCAGCCTCGTCCTTTTCCTCCTCTCGGACGCGGCCGTAT
ACGTTACCGGCCAAAATATAGGGGTGGATGGAGGGATGGGCCAGAGCACG
ATCCCTCTGCGACCACAAGACCACGAAGCGGCTCTATTGCCTATATACGG
AGAGTTGCCATCGAAGGCAAAGCTGTAGATGTCATTCCCGCCTTCCATCC
TAACTCCTTACAAGGCAGGCCTCTTCAGTGGCAAGGGTGTGATCGTCACA
GGTGGAGGCACTGGCCTGGGGTACGCAATAGCCCGGGAACTTGTATCTCT
AGGCGCCCAAGTCGTAATAGCTGCCCGCCGGTTGGACATCCTGGAGCAAG
CCGCTGCTGAACTTAATAAGGAAAGCGGCAAGACAGGGGGAAAAGTCCAT
GTCTGCCGGTGCAATGTTCGGAGCGAGGAGGACATTCAAGAGCTTGTGAC
CTTCGCTTTGGAGAAAATGGGGAGGATCGACGGCCTGGTCAACAACGCGG
GCGGGCAATTCGTGAGCCCCGTAGAGAATATCAGTGCCCGTGGCTTCAAG
GCTGTGGTTGAGACAAACTTGCTCTCATGTTTCATGCTTTCCAAGGAGGT
CTATAATCGGTGGTACGGCAGCGGTAGTGGCTCCATCGTGAACATCATCC
TCGCCAACAAGAATGGGTTTCCCATGATGGCACACAGCGGCGCCGCACGG
GCTGGCGTAGAGAACCTGACCAAGAGCATGGCCTTGGAGTGGGTGGGTAA
AGGTGTTCGCGTCAACTGCGTGGCTCCCGGCATCGTCTACACAGAAAGTG
GCTTTGCCAACTATGGCGAAATGGCCACCGCCTTTCTCGCTACCGTCCTT
CCTGCGATTCCAGCCCATCGGTGCGGCACCGCGGAGGAAGTGAGCAGCCT
CGTCCTTTTCCTCCTCTCGGACGCGGCCGTATACGTTACCGGCCAAAATA
TAGGGGTGGATGGAGGGATGGGCCAGAGCACGATCCCTCTGCGACCACAA
GACCACGAAGCGGCTCTATTGCCTATATACGGAGAGTTGCCATCGAAGGC
AAAGCTGTAG

Synonyms

Publications