jgi.p|Nanoce1779_2|547907, mRNA_11037 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|547907
Unique Name	mRNA_11037
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1795
Alignment location	scaffold_70:54887..56681 -

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Properties


Property Name	Value
TranscriptId	547993
Track	FilteredModels2
ProteinId	547907

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_70	supercontig	scaffold_70:54887..56681 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|547907	gene_11037	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|547907	mRNA_11037-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11037	CDS_11037	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_70:54887..56681-
coding sequence from alignment at scaffold_70:54887..56681-

mRNA sequence

>mRNA_11037 ID=mRNA_11037|Name=jgi.p|Nanoce1779_2|547907|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp
AGAAAAAGAAAGCGGCGTCGTGCAAGCTACATTCCCAGAAGAGTCAAGTG
CTTCGCAACAGAACAAGGCAATTTCATCCTATGAACGGCGTTTATCCGTT
TTTACCCCTCTATGAGTATGCTAAATACCTCTGCAGCTAACCTCCCCATC
CACGAAGTAATCGATGGACAAGTTGCGTCAAAACCAAAAAGAAGGAATGG
CAGTGCCCATATCTGGCCCTCGCGTCAAGGGAGAGCCGATGAAGGCCGTG
ACCTGGCAAGGTGCGCGCGATATTCGAGTTGTAGAGGTGGACCGCCCGGC
CTTGGCGCATCCGCAGGACGTCATCCTCCGCGTCACTTCCACGGCGATTT
GCGGCTCCGACCTGCATTTGTATACTGGCAACTTTCCCAAGAGCTCCATG
GCCAAGGGTGATATTTTGGGGCATGAATTCATGGGTATCGTGCACGAGAT
TGGCGAGGATGTGAAGGGGTACAAACCAGGTGATCGCGTGGTTTGCTCCT
TTGACATTGCCTGTGGACACTGTCACTCGTGCCACCACCAACTCTTCTCC
CTTTGCGACATGAGTAACGACAGCACCGCTCAAGAGGCTTTGTATGGAGA
CAAAAGTGGAGGTTACTTTGGGTACTCGCACCTGACGGGCGGCTGGGCAG
GAGGCCAAGCCGATTACGTGCGCGTTCCCTTTGCGGAGCAGAACCTTTTA
AAAGTGCCTGAGAATCACGCTCGACATACAGACTTGGACGTGCTACTTCT
GTCAGACGTGCTCGGTACAGCCTGGCATGCTTGTGAGATGGGTGAAGTGA
AGGAGGGGGATACGGTCGCGATCTGGGGCGCAGGGCCAGTGGGGATGCTG
GCAGCTCAGTGCGCTCAGCACCGGGGCGCGGCCAAGGTGATTTTGATCGA
TCAAGAGCTGTACCGCCTCGAATTTGCTGAGCATCGCCTGAACCCTCGTA
CGCTTGTCACGCTGAATGGCCGTCAGCTCAAGCAACAAAATTGTGTGGTG
GCCAAGGCGGTACGCGAGATTCTTCCGCACGGGCCGGATGTGGCTATTGA
ATGCGTGGGATTTCACTACGCGTCAACGTTCCTGCACCGGGCGGAGATGA
CCCTCGGTCTTGAAACGGACCCCGCTGACATGATGAACGAGATCTTTACC
ACTGTCCGCAAGGGTGGACGGGTCAGTGTGGTGGGGGTGTATGTAGGCCA
CGTGAATCACTTTAATTTTGGCTGTTTCATGGAAAAAGGCCTGACGATGA
AGGCAGGTCAAACCCCCGTGCAGCGCTACTGGAAAATGCTCTTGGAAAAA
GTGGAGAAGAAGGAGTTGGACCCGCGTGTCATAATCACTCACGAGCTGCC
GCTCGAAGAGGCGGCCAAGGCTTACCAAATTTTTAACAACAAAGAGAACG
GCTGCGTCAAGGTGGTGCTGCATACCAAATTTTATAAAGGCCAGTACCTT
GAGAAAGAAAAAGGTGTTAAGGACGAAGAGGTAGCCGGGGCAGGAGGGTC
ACACTAAAGGGTAAGGACGGATGAGAAGATAGACGGGGACCAGGTAGTTT
TGTAAGACAGTGACGTAAGACATTGATAGCCGGAAATGGGATAAATACAT
CGGCAATAAAGGGGGCGAGATTAGAGTAGTTGGACTCACAACGGCGTGCA
GGGAGAAAGGCAGGTGGATTGATTTGGATAGAGGGAAAGGTAAGAGAAGT
ATTTGAGTCCTTCAGACTCTACTTGAAAAAAAAAGCTGGACAATACAGCA
ATGGAGTAAAGACGAGAAATAATCAGCAATGGAGTAAAGACCGGG

protein sequence of jgi.p|Nanoce1779_2|547907

>mRNA_11037-protein ID=mRNA_11037-protein|Name=jgi.p|Nanoce1779_2|547907|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MDKLRQNQKEGMAVPISGPRVKGEPMKAVTWQGARDIRVVEVDRPALAHP
QDVILRVTSTAICGSDLHLYTGNFPKSSMAKGDILGHEFMGIVHEIGEDV
KGYKPGDRVVCSFDIACGHCHSCHHQLFSLCDMSNDSTAQEALYGDKSGG
YFGYSHLTGGWAGGQADYVRVPFAEQNLLKVPENHARHTDLDVLLLSDVL
GTAWHACEMGEVKEGDTVAIWGAGPVGMLAAQCAQHRGAAKVILIDQELY
RLEFAEHRLNPRTLVTLNGRQLKQQNCVVAKAVREILPHGPDVAIECVGF
HYASTFLHRAEMTLGLETDPADMMNEIFTTVRKGGRVSVVGVYVGHVNHF
NFGCFMEKGLTMKAGQTPVQRYWKMLLEKVEKKELDPRVIITHELPLEEA
AKAYQIFNNKENGCVKVVLHTKFYKGQYLEKEKGVKDEEVAGAGGSH*

mRNA from alignment at scaffold_70:54887..56681-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11037 ID=mRNA_11037|Name=jgi.p|Nanoce1779_2|547907|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at scaffold_70:54887..56681- (Nannochloropsis oceanica)
AGAAAAAGAAAGCGGCGTCGTGCAAGCTACATTCCCAGAAGAGTCAAGTG
CTTCGCAACAGAACAAGGCAATTTCATCCTATGAACGGCGTTTATCCGTT
TTTACCCCTCTATGAGTATGCTAAATACCTCTGCAGCTAACCTCCCCATC
CACGAAGTAATCGATGGACAAGTTGCGTCAAAACCAAAAAGAAGGAATGG
CAGTGCCCATATCTGGCCCTCGCGTCAAGGGAGAGCCGATGAAGGCCGTG
ACCTGGCAAGGTGCGCGCGATATTCGAGTTGTAGAGGTGGACCGCCCGGC
CTTGGCGCATCCGCAGGACGTCATCCTCCGCGTCACTTCCACGGCGATTT
GCGGCTCCGACCTGCATTTGTATACTGGCAACTTTCCCAAGAGCTCCATG
GCCAAGGGTGATATTTTGGGGCATGAATTCATGGGTATCGTGCACGAGAT
TGGCGAGGATGTGAAGGGGTACAAACCAGGTGATCGCGTGGTTTGCTCCT
TTGACATTGCCTGTGGACACTGTCACTCGTGCCACCACCAACTCTTCTCC
CTTTGCGACATGAGTAACGACAGCACCGCTCAAGAGGCTTTGTATGGAGA
CAAAAGTGGAGGTTACTTTGGGTACTCGCACCTGACGGGCGGCTGGGCAG
GAGGCCAAGCCGATTACGTGCGCGTTCCCTTTGCGGAGCAGAACCTTTTA
AAAGTGCCTGAGAATCACGCTCGACATACAGACTTGGACGTGCTACTTCT
GTCAGACGTGCTCGGTACAGCCTGGCATGCTTGTGAGATGGGTGAAGTGA
AGGAGGGGGATACGGTCGCGATCTGGGGCGCAGGGCCAGTGGGGATGCTG
GCAGCTCAGTGCGCTCAGCACCGGGGCGCGGCCAAGGTGATTTTGATCGA
TCAAGAGCTGTACCGCCTCGAATTTGCTGAGCATCGCCTGAACCCTCGTA
CGCTTGTCACGCTGAATGGCCGTCAGCTCAAGCAACAAAATTGTGTGGTG
GCCAAGGCGGTACGCGAGATTCTTCCGCACGGGCCGGATGTGGCTATTGA
ATGCGTGGGATTTCACTACGCGTCAACGTTCCTGCACCGGGCGGAGATGA
CCCTCGGTCTTGAAACGGACCCCGCTGACATGATGAACGAGATCTTTACC
ACTGTCCGCAAGGGTGGACGGGTCAGTGTGGTGGGGGTGTATGTAGGCCA
CGTGAATCACTTTAATTTTGGCTGTTTCATGGAAAAAGGCCTGACGATGA
AGGCAGGTCAAACCCCCGTGCAGCGCTACTGGAAAATGCTCTTGGAAAAA
GTGGAGAAGAAGGAGTTGGACCCGCGTGTCATAATCACTCACGAGCTGCC
GCTCGAAGAGGCGGCCAAGGCTTACCAAATTTTTAACAACAAAGAGAACG
GCTGCGTCAAGGTGGTGCTGCATACCAAATTTTATAAAGGCCAGTACCTT
GAGAAAGAAAAAGGTGTTAAGGACGAAGAGGTAGCCGGGGCAGGAGGGTC
ACACTAAAGGGTAAGGACGGATGAGAAGATAGACGGGGACCAGGTAGTTT
TGTAAGACAGTGACGTAAGACATTGATAGCCGGAAATGGGATAAATACAT
CGGCAATAAAGGGGGCGAGATTAGAGTAGTTGGACTCACAACGGCGTGCA
GGGAGAAAGGCAGGTGGATTGATTTGGATAGAGGGAAAGGTAAGAGAAGT
ATTTGAGTCCTTCAGACTCTACTTGAAAAAAAAAGCTGGACAATACAGCA
ATGGAGTAAAGACGAGAAATAATCAGCAATGGAGTAAAGACCGGG

Coding sequence (CDS) from alignment at scaffold_70:54887..56681-

>mRNA_11037 ID=mRNA_11037|Name=jgi.p|Nanoce1779_2|547907|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_70:54887..56681- (Nannochloropsis oceanica)
ATGGACAAGTTGCGTCAAAACCAAAAAGAAGGAATGGCAGTGCCCATATC
TGGCCCTCGCGTCAAGGGAGAGCCGATGAAGGCCGTGACCTGGCAAGGTG
CGCGCGATATTCGAGTTGTAGAGGTGGACCGCCCGGCCTTGGCGCATCCG
CAGGACGTCATCCTCCGCGTCACTTCCACGGCGATTTGCGGCTCCGACCT
GCATTTGTATACTGGCAACTTTCCCAAGAGCTCCATGGCCAAGGGTGATA
TTTTGGGGCATGAATTCATGGGTATCGTGCACGAGATTGGCGAGGATGTG
AAGGGGTACAAACCAGGTGATCGCGTGGTTTGCTCCTTTGACATTGCCTG
TGGACACTGTCACTCGTGCCACCACCAACTCTTCTCCCTTTGCGACATGA
GTAACGACAGCACCGCTCAAGAGGCTTTGTATGGAGACAAAAGTGGAGGT
TACTTTGGGTACTCGCACCTGACGGGCGGCTGGGCAGGAGGCCAAGCCGA
TTACGTGCGCGTTCCCTTTGCGGAGCAGAACCTTTTAAAAGTGCCTGAGA
ATCACGCTCGACATACAGACTTGGACGTGCTACTTCTGTCAGACGTGCTC
GGTACAGCCTGGCATGCTTGTGAGATGGGTGAAGTGAAGGAGGGGGATAC
GGTCGCGATCTGGGGCGCAGGGCCAGTGGGGATGCTGGCAGCTCAGTGCG
CTCAGCACCGGGGCGCGGCCAAGGTGATTTTGATCGATCAAGAGCTGTAC
CGCCTCGAATTTGCTGAGCATCGCCTGAACCCTCGTACGCTTGTCACGCT
GAATGGCCGTCAGCTCAAGCAACAAAATTGTGTGGTGGCCAAGGCGGTAC
GCGAGATTCTTCCGCACGGGCCGGATGTGGCTATTGAATGCGTGGGATTT
CACTACGCGTCAACGTTCCTGCACCGGGCGGAGATGACCCTCGGTCTTGA
AACGGACCCCGCTGACATGATGAACGAGATCTTTACCACTGTCCGCAAGG
GTGGACGGGTCAGTGTGGTGGGGGTGTATGTAGGCCACGTGAATCACTTT
AATTTTGGCTGTTTCATGGAAAAAGGCCTGACGATGAAGGCAGGTCAAAC
CCCCGTGCAGCGCTACTGGAAAATGCTCTTGGAAAAAGTGGAGAAGAAGG
AGTTGGACCCGCGTGTCATAATCACTCACGAGCTGCCGCTCGAAGAGGCG
GCCAAGGCTTACCAAATTTTTAACAACAAAGAGAACGGCTGCGTCAAGGT
GGTGCTGCATACCAAATTTTATAAAGGCCAGTACCTTGAGAAAGAAAAAG
GTGTTAAGGACGAAGAGGTAGCCGGGGCAGGAGGGTCACACTAA

Synonyms

Publications