jgi.p|Nanoce1779_2|403888, mRNA_11036 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|403888
Unique NamemRNA_11036
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1000
Alignment locationscaffold_70:53312..54543 -

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Properties
Property NameValue
TranscriptId403974
TrackFilteredModels2
ProteinId403888
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:53312..54543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|403888gene_11036Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|403888mRNA_11036-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11036CDS_11036Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11036 ID=mRNA_11036|Name=jgi.p|Nanoce1779_2|403888|organism=Nannochloropsis oceanica|type=mRNA|length=1000bp
CGGCTGTTGGTACCACCTTTACAGCACACTTTATTTTGGCTAGAAGCGCT
GGGTCACGCTCATATACAAAGGAAACGAGCCCCAAAAGATAAGTTTTCAA
GGGTACTCCCATGTTTGCGGCTAACGTACATATTCAGCGAAACGGCGAGT
TTTGCGCCCGACATGAATTGTTGCGCTGCCCGCACGAGATTGGCCGCCTC
TTTCCAACTCTCGGCTCCCTGTCTTACATATATTCCCGGTAACTCACAGG
TATAATATTTGTCCAGATGAGGAGAGGCGCGACCATCGGCTGCGGGCTCC
TGAGGGAGGGGTTAGCAGCAGGGAGAAGAGTAGCGGCCGCACCACCTTCA
TCTCGACGTGCGGCCGCCTCCCGGCCCCCCATTCCTACCAACAACATGCC
CCGCAGCCTTCGCAGCAGCAGCAGTAGCCACTGTGTAGGAAGAAGATTAA
GCTCGTCGTTGTCACCCTCCCCTTCCTCGTCTTCTCCTCCGGTCACGCCT
CCTCCTTCCCCAGCCATGAAATTTGGCCCCCCAAAAGGAGGGCACGCCTT
GTTGCACTTTGGTAATGCTTGCGCTCTGCTGAGTTTTTCCATGACAGACG
TATTTCTCCTTCGCTCCCTGGCCATGGTGGCCACAACCTGTGGTGTAATA
TACAACATCACGCACTCTCCGCCCCTCCGCGTCCCAGCCATCTGGGGCCT
TGTATTTCTCACAGTCAATGGGACCATGATTCTCTCGTTGTTGATGGAAG
ACAAGGAGATTGCGTTCTCAAAGGTAGTGGGAGGGAGGGGGGGAGAGAGG
GTAGGAGGATGGGTGCGTGGGAGCGAGTGTATGTACTAATTCGGTCTTAG
CTTCAATTGTGAGTTAATAAGGAATGAATTTGCGTTGGGAAGCTATTACT
CCATTTTTCGCTCCACCGGTCCTCTCTCGTCCCTTCCTCCTTCCTCTCCT
CTCTCGCTGCTTCTTAGGAGGAGCTCGTCCTCTTCGAAGAGCACTTTTTG
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protein sequence of jgi.p|Nanoce1779_2|403888

>mRNA_11036-protein ID=mRNA_11036-protein|Name=jgi.p|Nanoce1779_2|403888|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MRRGATIGCGLLREGLAAGRRVAAAPPSSRRAAASRPPIPTNNMPRSLRS
SSSSHCVGRRLSSSLSPSPSSSSPPVTPPPSPAMKFGPPKGGHALLHFGN
ACALLSFSMTDVFLLRSLAMVATTCGVIYNITHSPPLRVPAIWGLVFLTV
NGTMILSLLMEDKEIAFSKVVGGRGGERVGGWVRGSECMY*
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mRNA from alignment at scaffold_70:53312..54543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11036 ID=mRNA_11036|Name=jgi.p|Nanoce1779_2|403888|organism=Nannochloropsis oceanica|type=mRNA|length=1232bp|location=Sequence derived from alignment at scaffold_70:53312..54543- (Nannochloropsis oceanica)
CGGCTGTTGGTACCACCTTTACAGCACACTTTATTTTGGCTAGAAGCGCT
GGGTCACGCTCATATACAAAGGAAACGAGCCCCAAAAGATAAGTTTTCAA
GGGTACTCCCATGTTTGCGGCTAACGTACATATTCAGCGAAACGGCGAGT
TTTGCGCCCGACATGAATTGTTGCGCTGCCCGCACGAGATTGGCCGCCTC
TTTCCAACTCTCGGCTCCCTGTCTTACATATATTCCCGGTAACTCACAGG
TATAATATTTGTCCAGATGAGGAGAGGCGCGACCATCGGCTGCGGGCTCC
TGAGGGAGGGGTTAGCAGCAGGGAGAAGAGTAGCGGCCGCACCACCTTCA
TCTCGACGTGCGGCCGCCTCCCGGCCCCCCATTCCTACCAACAACATGCC
CCGCAGCCTTCGCAGCAGCAGCAGTAGCCACTGTGTAGGAAGAAGATTAA
GCTCGTCGTTGTCACCCTCCCCTTCCTCGTCTTCTCCTCCGGTCACGCCT
CCTCCTTCCCCAGCCATGAAATTTGGCCCCCCAAAAGGAGGGCACGCCTT
GTTGCACTTTGGTAATGCTTGCGCTCTGCTGAGTTTTTCCATGACAGACG
TATTTCTCCTTCGCTCCCTGGCCATGGTGGCCACAACCTGTGGTGGTGAG
GGCTCTTTACAGGGGGGAGGGAGGGAGGGAGGGTAGAAAGGAAGAAGAGT
TGACTGCTTGGTCGAGTGCGATGTTTCTTCCTCTAGTGATGGTCCTGGTA
GTCATAAATAGGCAAGATGGGTGCTTATGTAAAACTAGGATAAATGCACA
ATTCGCCATGGCACTGTGTCAAGTTTGAATCATACCGTCCCTCATTCTCT
GTCTCTCCCTCCCTAACTCCCTCCAAGTAATATACAACATCACGCACTCT
CCGCCCCTCCGCGTCCCAGCCATCTGGGGCCTTGTATTTCTCACAGTCAA
TGGGACCATGATTCTCTCGTTGTTGATGGAAGACAAGGAGATTGCGTTCT
CAAAGGTAGTGGGAGGGAGGGGGGGAGAGAGGGTAGGAGGATGGGTGCGT
GGGAGCGAGTGTATGTACTAATTCGGTCTTAGCTTCAATTGTGAGTTAAT
AAGGAATGAATTTGCGTTGGGAAGCTATTACTCCATTTTTCGCTCCACCG
GTCCTCTCTCGTCCCTTCCTCCTTCCTCTCCTCTCTCGCTGCTTCTTAGG
AGGAGCTCGTCCTCTTCGAAGAGCACTTTTTG
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Coding sequence (CDS) from alignment at scaffold_70:53312..54543-

>mRNA_11036 ID=mRNA_11036|Name=jgi.p|Nanoce1779_2|403888|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_70:53312..54543- (Nannochloropsis oceanica)
TAATATACAACATCACGCACTCTCCGCCCCTCCGCGTCCCAGCCATCTGG
GGCCTTGTATTTCTCACAGTCAATGGGACCATGATTCTCTCGTTGTTGAT
GGAAGACAAGGAGATTGCGTTCTCAAAGGTAGTGGGAGGGAGGGGGGGAG
AGAGGGTAGGAGGATGGGTGCGTGGGAGCGAGTGTATGTACTAAATGAGG
AGAGGCGCGACCATCGGCTGCGGGCTCCTGAGGGAGGGGTTAGCAGCAGG
GAGAAGAGTAGCGGCCGCACCACCTTCATCTCGACGTGCGGCCGCCTCCC
GGCCCCCCATTCCTACCAACAACATGCCCCGCAGCCTTCGCAGCAGCAGC
AGTAGCCACTGTGTAGGAAGAAGATTAAGCTCGTCGTTGTCACCCTCCCC
TTCCTCGTCTTCTCCTCCGGTCACGCCTCCTCCTTCCCCAGCCATGAAAT
TTGGCCCCCCAAAAGGAGGGCACGCCTTGTTGCACTTTGGTAATGCTTGC
GCTCTGCTGAGTTTTTCCATGACAGACGTATTTCTCCTTCGCTCCCTGGC
CATGGTGGCCACAACCTGTGGTGTAATATACAACATCACGCACTCTCCGC
CCCTCCGCGTCCCAGCCATCTGGGGCCTTGTATTTCTCACAGTCAATGGG
ACCATGATTCTCTCGTTGTTGATGGAAGACAAGGAGATTGCGTTCTCAAA
GGTAGTGGGAGGGAGGGGGGGAGAGAGGGTAGGAGGATGGGTGCGTGGGA
GCGAGTGTATGTACTAAATGAGGAGAGGCGCGACCATCGGCTGCGGGCTC
CTGAGGGAGGGGTTAGCAGCAGGGAGAAGAGTAGCGGCCGCACCACCTTC
ATCTCGACGTGCGGCCGCCTCCCGGCCCCCCATTCCTACCAACAACATGC
CCCGCAGCCTTCGCAGCAGCAGCAGTAGCCACTGTGTAGGAAGAAGATTA
AGCTCGTCGTTGTCACCCTCCCCTTCCTCGTCTTCTCCTCCGGTCACGCC
TCCTCCTTCCCCAGCCATGAAATTTGGCCCCCCAAAAGGAGGGCACGCCT
TGTTGCACTTTGGTAATGCTTGCGCTCTGCTGAGTTTTTCCATGACAGAC
GTATTTCTCCTTCGCTCCCTGGCCATGGTGGCCACAACCTGTGGTG
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Synonyms
Publications