jgi.p|Nanoce1779_2|613039, mRNA_11033 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613039
Unique NamemRNA_11033
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length686
Alignment locationscaffold_70:38062..39315 +

Link to JBrowse

Properties
Property NameValue
TranscriptId613125
TrackFilteredModels2
ProteinId613039
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:38062..39315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613039gene_11033Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613039mRNA_11033-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11033CDS_11033Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11033 ID=mRNA_11033|Name=jgi.p|Nanoce1779_2|613039|organism=Nannochloropsis oceanica|type=mRNA|length=686bp
ACAGGGTCGTTCCTCCTTCCTTTAGTAACCAGACACGAACGAGCACCATG
GCGGACGAAGAGCCTGTGGATACCATGCCAGAGATCCGGGAGAAGGTCAA
GCCCAAGTGTGCGGCAGACTGGAAAGACTATCAGGGCTGCGTGGATCGTA
TCACCGCCCGAGGAGACGGGACGTGCGAGCCCCAGTACATGGAGTGGCTC
AAATGCATCGACAAGCACAGCGCCAAGGCGGTTCTGAAGGCACTAAAGTA
ACACACACATGAGCAATGGAAAGGGAGGTTAGGATGAAAGGAGAAAGGGA
GGGAGGGGGAAAGGACGGGTGCTATTTCCTCGTGCTGGGCGAGCAAGTTT
TGATTGCTGATGATGACGGAGTTGGTACTATAGAGAAAAGAGGAGGGAGG
GAAGGAGGGTAGGAAAGAGGGAGGGACAGAGGGAAGTGCAGTTGATGATT
CTTGTCCTGGCCCCATTCATAAATGTAGGCGATTGATGTGTAAGGTGATT
TAGTGCATGTGGGAGGGAGAAACGGAGAGTGTGGAGGAAGGTATGTCGTC
CGTTTTGCTTCAGTGACCCTCCCGCCCTCTGTGTGTGCGGCGCCTGCCTT
GTGTCTCGGTCCCTTATGGTGATCTTGCGGCTGCTTCGAATGAACGAATA
AGAAGAGGAGAAAAAGAGAAAAGTTGAGACGTCGCC
back to top

protein sequence of jgi.p|Nanoce1779_2|613039

>mRNA_11033-protein ID=mRNA_11033-protein|Name=jgi.p|Nanoce1779_2|613039|organism=Nannochloropsis oceanica|type=polypeptide|length=68bp
MADEEPVDTMPEIREKVKPKCAADWKDYQGCVDRITARGDGTCEPQYMEW
LKCIDKHSAKAVLKALK*
back to top

mRNA from alignment at scaffold_70:38062..39315+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11033 ID=mRNA_11033|Name=jgi.p|Nanoce1779_2|613039|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp|location=Sequence derived from alignment at scaffold_70:38062..39315+ (Nannochloropsis oceanica)
ACAGGGTCGTTCCTCCTTCCTTTAGTAACCAGACACGAACGAGCACCATG
GTAAGCCCTATACTGTATATATTCCCTTCTCCCTTTCTCCCTCCTTCCCT
CTGGTCATCCCTCACGCCCATTCCCCCCCTTCCTCGTTCCACGCGATCAT
CAGGCGGACGAAGAGCCTGTGGATACCATGCCAGAGATCCGGGAGAAGGT
CAAGCCCAAGTGTGCGGCAGACTGGAAAGACTATCAGGTACGGGAAGGGG
GAAGGGAGGGATGCAGCAAGGGAAAAGCAAGTGGAGGGAGCCAGTCTTCA
AAACAAGAAAAGAGACTGACGTGTGCAGCAGCAGCGGCGGCGTCTGCAGC
CACCCCATGACAAAGGTAGTAATTGCAGCAGGCAGGAGAAGCCACGCGTA
TCTAGAGAGAGGGCTATCGTGGGGGATGCAAGGAAGAAGGCGGAAGAGCC
TATGGAATAATACATGCTCAGTACAAGAAAACCTTCCTCCTCACTCCTTC
ACTCCTTCCCTCCCTTCCTATCTCTCTTCCTCCCTGTCTTCAATCCGGTA
TCAGGGCTGCGTGGATCGTATCACCGCCCGAGGAGACGGGACGTGCGAGC
CCCAGTACATGGAGTGGCTCAAATGCATCGACAAGCACGTGCGTACACGC
CCTCCCTCCCCCTTTCTTTCCTTGGCTCCCTTTTTCCTTTACTCCTTTCC
AACCTTTCTTTGGACTATACAGTTCATTTTCCGGTCTCTGACTTTCTCCT
CTCCTCCCCCCCCCCCCTTCATTTCTCAAATTACAGAGCGCCAAGGCGGT
TCTGAAGGCACTAAAGTAACACACACATGAGCAATGGAAAGGGAGGTTAG
GATGAAAGGAGAAAGGGAGGGAGGGGGAAAGGACGGGTGCTATTTCCTCG
TGCTGGGCGAGCAAGTTTTGATTGCTGATGATGACGGAGTTGGTACTATA
GAGAAAAGAGGAGGGAGGGAAGGAGGGTAGGAAAGAGGGAGGGACAGAGG
GAAGTGCAGTTGATGATTCTTGTCCTGGCCCCATTCATAAATGTAGGCGA
TTGATGTGTAAGGTGATTTAGTGCATGTGGGAGGGAGAAACGGAGAGTGT
GGAGGAAGGTATGTCGTCCGTTTTGCTTCAGTGACCCTCCCGCCCTCTGT
GTGTGCGGCGCCTGCCTTGTGTCTCGGTCCCTTATGGTGATCTTGCGGCT
GCTTCGAATGAACGAATAAGAAGAGGAGAAAAAGAGAAAAGTTGAGACGT
CGCC
back to top

Coding sequence (CDS) from alignment at scaffold_70:38062..39315+

>mRNA_11033 ID=mRNA_11033|Name=jgi.p|Nanoce1779_2|613039|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_70:38062..39315+ (Nannochloropsis oceanica)
ATGGCGGACGAAGAGCCTGTGGATACCATGCCAGAGATCCGGGAGAAGGT
CAAGCCCAAGTGTGCGGCAGACTGGAAAGACTATCAGGGCTGCGTGGATC
GTATCACCGCCCGAGGAGACGGGACGTGCGAGCCCCAGTACATGGAGTGG
CTCAAATGCATCGACAAGCACAGCGCCAAGGCGGTTCTGAAGGCACTAAA
GTAAATGGCGGACGAAGAGCCTGTGGATACCATGCCAGAGATCCGGGAGA
AGGTCAAGCCCAAGTGTGCGGCAGACTGGAAAGACTATCAGGGCTGCGTG
GATCGTATCACCGCCCGAGGAGACGGGACGTGCGAGCCCCAGTACATGGA
GTGGCTCAAATGCATCGACAAGCACAGCGCCAAGGCGGTTCTGAAGGCAC
TAAAGTAAATGGCGGACGAAGAGCCTGTGGATACCATGCCAGAGATCCGG
GAGAAGGTCAAGCCCAAGTGTGCGGCAGACTGGAAAGACTATCAGGGCTG
CGTGGATCGTATCACCGCCCGAGGAGACGGGACGTGCGAGCCCCAGTACA
TGGAGTGGCTCAAATGCATCGACAAGCACAGCGCCAAGGCGGTTCTGAAG
GCACTAAAGTAAATGGCGGACGAAGAGCCTGTGGATACCATGCCAGAGAT
CCGGGAGAAGGTCAAGCCCAAGTGTGCGGCAGACTGGAAAGACTATCAGG
GCTGCGTGGATCGTATCACCGCCCGAGGAGACGGGACGTGCGAGCCCCAG
TACATGGAGTGGCTCAAATGCATCGACAAGCACAGCGCCAAGGCGGTTCT
GAAGGCACTAAAGTAA
back to top
Synonyms
Publications