jgi.p|Nanoce1779_2|613024, mRNA_11030 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|613024
Unique Name	mRNA_11030
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1569
Alignment location	scaffold_70:19876..21444 -

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Properties


Property Name	Value
TranscriptId	613110
Track	FilteredModels2
ProteinId	613024

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_70	supercontig	scaffold_70:19876..21444 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613024	gene_11030	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613024	mRNA_11030-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11030	CDS_11030	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_70:19876..21444-
coding sequence from alignment at scaffold_70:19876..21444-

mRNA sequence

>mRNA_11030 ID=mRNA_11030|Name=jgi.p|Nanoce1779_2|613024|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp
ACAGCAAACACACGTGACACATCATGCGTAGCGCTTTTTCTCTCCTTGCC
CTCGGCACCACGTTTGTCCTGACTGCGGCTCAGCCGATGGTGACCCTCAC
CTCCATCAAGGCTGTCGACGTGGCCAGGGAGAACAAGGACCAATGGAGTC
TCAAGGGCTACGTCGACGACCCTACCGGGACGTATGTTCCCTTGGTGGAT
GACATTGGCTTGAACGTGAGGCTTGTGGACTCGAACAACGTCAACATTAG
TGCCGTGAACTTTGCCCCTAGTGAGTGCAACCCGCTCCTCAACGATAAGG
GAACCGTTTGCAAGGTTACGGGTGCCCGTTACACGCTGAGGAAGATCAAT
AAGCTCCCCAAGAGCGCCATGATCTCGGCGCAGAAGAAGCACAACAAGAC
CAGCAGCGAATCTTTCTATTACAAGCTTTCGGGCGTTTTCCGCCGTCAGG
AGTTCACGGCCACTGTGGTGACGCCTCTGACTGTTATCTTCGCTGCGGGC
AACGTTGGCACCCTTGCTGTCACCAACACGGACTGTACAGAGAAAGATGG
AGCCAAATCCACCAGGTACCTCTGCAAGCCCGGTGCCTCTACCCCCGCCC
CTACCGGGCTCCCATAAACGGCCTTATAACGGATCATAAGCATGACAAGT
TTCATGTCTCGCTCCCGTTTCTAATGTGTTTTTGATGATAAGGTTCTGTA
TGCCCCTTGTCAGTCTGGAAGCTCCACCTTCCATACGTGATGTGTCGACT
TGTCTAGGCGTGTGACAATGCCTTTGTTCGTGTTTGTGTTGTGTTGTGTA
TGTGTTTTTATTTGTTGCTCGTGTGCCACTTATGTTGAGAGCTTCAATTG
CCTCATACGTCCACCAGAGGCTTCTTTGAAGCCTGCATGCGGGAGGAGGA
AAACATGGCTCAATTTTCCGTGTAGACAGGTAACTAAAGTCCAAAATGTA
GCCGGTGAATCAAGATAGTGCAGACGCTTCTATCATTCTTTCTTCCATGC
TTCTTCTTCTTTGACTTCGTCTTCGTCTGCGTCTTTTTTTCCTTTCTTGC
CCCCGCTCCCGGTCTCCCCCTCTCCCCCCCCCTCCTCCAGGTATCCTTTT
GGGGGAATCGCGTGAAGGAGAGCAACACGAAGACCCTGTTACCCACCTTC
TTCTCTTTCTTTTTCATGATCTATTTCTTCTTCTCCTTCATCACGTGAAA
CTCAACCATCTTGCATTGACCATCCGCCAGCAAAATGATGATGTAACTCG
GCCGTGTGAGAGGCAGAAGAGAAGTAGAATGTAGCCTCGCACTGATTGTT
GTCGTTGTTTGGCAGAGCAGGAATGGATGGAGGGCGGGAAGGAGAGAAGG
GTGGATAGTTAATCGTATATTAAAAAGGAGGGAAATATACAGATAGCGGA
TAGCACTTTGAAAGGAGGAAAAAGAAGGCGCCGAGAAAGCAGAAGTGTAA
TCGTGAAAGAGCACACAGAGTCGACAGCATAATCAACAGGAAAAAGACAG
ACGGGAAAGACAAGGGCGTGCTGCCGATGAAGAGAAATGAAAATCAAATT
TGAAATAAGAGGAATCAAA

protein sequence of jgi.p|Nanoce1779_2|613024

>mRNA_11030-protein ID=mRNA_11030-protein|Name=jgi.p|Nanoce1779_2|613024|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MRSAFSLLALGTTFVLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDP
TGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTG
ARYTLRKINKLPKSAMISAQKKHNKTSSESFYYKLSGVFRRQEFTATVVT
PLTVIFAAGNVGTLAVTNTDCTEKDGAKSTRYLCKPGASTPAPTGLP*

mRNA from alignment at scaffold_70:19876..21444-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11030 ID=mRNA_11030|Name=jgi.p|Nanoce1779_2|613024|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp|location=Sequence derived from alignment at scaffold_70:19876..21444- (Nannochloropsis oceanica)
ACAGCAAACACACGTGACACATCATGCGTAGCGCTTTTTCTCTCCTTGCC
CTCGGCACCACGTTTGTCCTGACTGCGGCTCAGCCGATGGTGACCCTCAC
CTCCATCAAGGCTGTCGACGTGGCCAGGGAGAACAAGGACCAATGGAGTC
TCAAGGGCTACGTCGACGACCCTACCGGGACGTATGTTCCCTTGGTGGAT
GACATTGGCTTGAACGTGAGGCTTGTGGACTCGAACAACGTCAACATTAG
TGCCGTGAACTTTGCCCCTAGTGAGTGCAACCCGCTCCTCAACGATAAGG
GAACCGTTTGCAAGGTTACGGGTGCCCGTTACACGCTGAGGAAGATCAAT
AAGCTCCCCAAGAGCGCCATGATCTCGGCGCAGAAGAAGCACAACAAGAC
CAGCAGCGAATCTTTCTATTACAAGCTTTCGGGCGTTTTCCGCCGTCAGG
AGTTCACGGCCACTGTGGTGACGCCTCTGACTGTTATCTTCGCTGCGGGC
AACGTTGGCACCCTTGCTGTCACCAACACGGACTGTACAGAGAAAGATGG
AGCCAAATCCACCAGGTACCTCTGCAAGCCCGGTGCCTCTACCCCCGCCC
CTACCGGGCTCCCATAAACGGCCTTATAACGGATCATAAGCATGACAAGT
TTCATGTCTCGCTCCCGTTTCTAATGTGTTTTTGATGATAAGGTTCTGTA
TGCCCCTTGTCAGTCTGGAAGCTCCACCTTCCATACGTGATGTGTCGACT
TGTCTAGGCGTGTGACAATGCCTTTGTTCGTGTTTGTGTTGTGTTGTGTA
TGTGTTTTTATTTGTTGCTCGTGTGCCACTTATGTTGAGAGCTTCAATTG
CCTCATACGTCCACCAGAGGCTTCTTTGAAGCCTGCATGCGGGAGGAGGA
AAACATGGCTCAATTTTCCGTGTAGACAGGTAACTAAAGTCCAAAATGTA
GCCGGTGAATCAAGATAGTGCAGACGCTTCTATCATTCTTTCTTCCATGC
TTCTTCTTCTTTGACTTCGTCTTCGTCTGCGTCTTTTTTTCCTTTCTTGC
CCCCGCTCCCGGTCTCCCCCTCTCCCCCCCCCTCCTCCAGGTATCCTTTT
GGGGGAATCGCGTGAAGGAGAGCAACACGAAGACCCTGTTACCCACCTTC
TTCTCTTTCTTTTTCATGATCTATTTCTTCTTCTCCTTCATCACGTGAAA
CTCAACCATCTTGCATTGACCATCCGCCAGCAAAATGATGATGTAACTCG
GCCGTGTGAGAGGCAGAAGAGAAGTAGAATGTAGCCTCGCACTGATTGTT
GTCGTTGTTTGGCAGAGCAGGAATGGATGGAGGGCGGGAAGGAGAGAAGG
GTGGATAGTTAATCGTATATTAAAAAGGAGGGAAATATACAGATAGCGGA
TAGCACTTTGAAAGGAGGAAAAAGAAGGCGCCGAGAAAGCAGAAGTGTAA
TCGTGAAAGAGCACACAGAGTCGACAGCATAATCAACAGGAAAAAGACAG
ACGGGAAAGACAAGGGCGTGCTGCCGATGAAGAGAAATGAAAATCAAATT
TGAAATAAGAGGAATCAAA

Coding sequence (CDS) from alignment at scaffold_70:19876..21444-

>mRNA_11030 ID=mRNA_11030|Name=jgi.p|Nanoce1779_2|613024|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_70:19876..21444- (Nannochloropsis oceanica)
ATGCGTAGCGCTTTTTCTCTCCTTGCCCTCGGCACCACGTTTGTCCTGAC
TGCGGCTCAGCCGATGGTGACCCTCACCTCCATCAAGGCTGTCGACGTGG
CCAGGGAGAACAAGGACCAATGGAGTCTCAAGGGCTACGTCGACGACCCT
ACCGGGACGTATGTTCCCTTGGTGGATGACATTGGCTTGAACGTGAGGCT
TGTGGACTCGAACAACGTCAACATTAGTGCCGTGAACTTTGCCCCTAGTG
AGTGCAACCCGCTCCTCAACGATAAGGGAACCGTTTGCAAGGTTACGGGT
GCCCGTTACACGCTGAGGAAGATCAATAAGCTCCCCAAGAGCGCCATGAT
CTCGGCGCAGAAGAAGCACAACAAGACCAGCAGCGAATCTTTCTATTACA
AGCTTTCGGGCGTTTTCCGCCGTCAGGAGTTCACGGCCACTGTGGTGACG
CCTCTGACTGTTATCTTCGCTGCGGGCAACGTTGGCACCCTTGCTGTCAC
CAACACGGACTGTACAGAGAAAGATGGAGCCAAATCCACCAGGTACCTCT
GCAAGCCCGGTGCCTCTACCCCCGCCCCTACCGGGCTCCCATAA

Synonyms

Publications