jgi.p|Nanoce1779_2|634321, mRNA_11025 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|634321
Unique NamemRNA_11025
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length730
Alignment locationscaffold_70:8087..8966 -

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Properties
Property NameValue
TranscriptId634407
TrackFilteredModels2
ProteinId634321
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:8087..8966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634321gene_11025Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634321mRNA_11025-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11025CDS_11025Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11025 ID=mRNA_11025|Name=jgi.p|Nanoce1779_2|634321|organism=Nannochloropsis oceanica|type=mRNA|length=730bp
GATGGTGGCCATGGTGGCAGCGACACTGCTGCTTAGCTTCAGTGTCCTGA
CACAAGCCCAGGTATTCGTTGATGGAAGGGGTGGGAGGGTATGAATTTAT
TGCCTGCCCAGCAGGTCGACGAGCTTAGTCTGAACGCCACATAATCCTAA
CCTAATGAGAAACCATGCAATTTAGCGGCCACGGTACTTAGCAGTCGAAT
ATCTCTGTAAATTTTTATTTGGATCGGTTGACAGCCACCTCTTTCCATTC
CTGCGACTTGCTGGATGGACGCCTCTCCCTCACTTCGGGCCCATGTCGCT
CCCTCCCTCCCTTTCTCTCTCCCTCCCTCCCACCTCCCTTCTCCTCATAA
CCAATCAGGTCAAATCCCTCCAAACTGACTTGCAAGTGCAAACAGTGTGG
GACAATATCTGGGGCATTGTGCAAGTGGTCTTCTTGCCGGGGGGGAAGGT
GATGACTGTGCACAAGCCGGGCGAGCTCCACGTGTATGATTCCATCTACA
GCAAGAGCCAGGATTACACGACCATCCTGGACATTAAGGACGAGGTGTAT
TCCTGGTGGGATCACGGGCTCCTCTCCGCGGCCCTGCACCCGGACTTCCC
CAAGAAGCCTTTTTTGTACATCTCGGTAAGGGAGGCAGGGGTGAGGGAGG
AAGGGAAGAAGGGAGGGAGGGAGGGTATGGGAGGAAGACATTTGACACTG
CACCTCCAAGTGGCCCTACCCCTCTCTTGA
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protein sequence of jgi.p|Nanoce1779_2|634321

>mRNA_11025-protein ID=mRNA_11025-protein|Name=jgi.p|Nanoce1779_2|634321|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MSLPPSLSLSLPPTSLLLITNQVKSLQTDLQVQTVWDNIWGIVQVVFLPG
GKVMTVHKPGELHVYDSIYSKSQDYTTILDIKDEVYSWWDHGLLSAALHP
DFPKKPFLYISVREAGVREEGKKGGREGMGGRHLTLHLQVALPLS*
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mRNA from alignment at scaffold_70:8087..8966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11025 ID=mRNA_11025|Name=jgi.p|Nanoce1779_2|634321|organism=Nannochloropsis oceanica|type=mRNA|length=880bp|location=Sequence derived from alignment at scaffold_70:8087..8966- (Nannochloropsis oceanica)
GATGGTGGCCATGGTGGCAGCGACACTGCTGCTTAGCTTCAGTGTCCTGA
CACAAGCCCAGGTATTCGTTGATGGAAGGGGTGGGAGGGTATGAATTTAT
TGCCTGCCCAGCAGGTCGACGAGCTTAGTCTGAACGCCACATAATCCTAA
CCTAATGAGAAACCATGCAATTTAGCGGCCACGGTACTTAGCAGTCGAAT
ATCTCTGTAAATTTTTATTTGGATCGGTTGACAGCCACCTCTTTCCATTC
CTGCGACTTGCTGGATGGACGCCTCTCCCTCACTTCGGGCCCATGTCGCT
CCCTCCCTCCCTTTCTCTCTCCCTCCCTCCCACCTCCCTTCTCCTCATAA
CCAATCAGGTCAAATCCCTCCAAACTGACTTGCAAGTGCAAACAGTGTGG
GACAATATCTGGGGCATTGTGCAAGTGGTCTTCTTGCCGGGGGGGAAGGT
GATGACTGTGCACAAGCCGGGCGAGCTCCACGTGTATGATTCCATCTACA
GCAAGAGCCAGGTGGGGACGACGAGAAAGGAGGGAAGGAGGGGGTCACGG
ATGTCAGAAGATTCGTTCATCCGTGTGCCTGAAGAATGCAAGATAGTAAC
GCGACGCTCACCAACCCGTCCCTCCTTCCCTCCCTCCGCCCCTCCTTCCC
CCCCCTCCTAGGATTACACGACCATCCTGGACATTAAGGACGAGGTGTAT
TCCTGGTGGGATCACGGGCTCCTCTCCGCGGCCCTGCACCCGGACTTCCC
CAAGAAGCCTTTTTTGTACATCTCGGTAAGGGAGGCAGGGGTGAGGGAGG
AAGGGAAGAAGGGAGGGAGGGAGGGTATGGGAGGAAGACATTTGACACTG
CACCTCCAAGTGGCCCTACCCCTCTCTTGA
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Coding sequence (CDS) from alignment at scaffold_70:8087..8966-

>mRNA_11025 ID=mRNA_11025|Name=jgi.p|Nanoce1779_2|634321|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_70:8087..8966- (Nannochloropsis oceanica)
GATTACACGACCATCCTGGACATTAAGGACGAGGTGTATTCCTGGTGGGA
TCACGGGCTCCTCTCCGCGGCCCTGCACCCGGACTTCCCCAAGAAGCCTT
TTTTGTACATCTCGGTAAGGGAGGCAGGGGTGAGGGAGGAAGGGAAGAAG
GGAGGGAGGGAGGGTATGGGAGGAAGACATTTGACACTGCACCTCCAAGT
GGCCCTACCCCTCTCTTGAATGTCGCTCCCTCCCTCCCTTTCTCTCTCCC
TCCCTCCCACCTCCCTTCTCCTCATAACCAATCAGGTCAAATCCCTCCAA
ACTGACTTGCAAGTGCAAACAGTGTGGGACAATATCTGGGGCATTGTGCA
AGTGGTCTTCTTGCCGGGGGGGAAGGTGATGACTGTGCACAAGCCGGGCG
AGCTCCACGTGTATGATTCCATCTACAGCAAGAGCCAGGATTACACGACC
ATCCTGGACATTAAGGACGAGGTGTATTCCTGGTGGGATCACGGGCTCCT
CTCCGCGGCCCTGCACCCGGACTTCCCCAAGAAGCCTTTTTTGTACATCT
CGGTAAGGGAGGCAGGGGTGAGGGAGGAAGGGAAGAAGGGAGGGAGGGAG
GGTATGGGAGGAAGACATTTGACACTGCACCTCCAAGTGGCCCTACCCCT
CTCTTGAATGTCGCTCCCTCCCTCCCTTTCTCTCTCCCTCCCTCCCACCT
CCCTTCTCCTCATAACCAATCAGGTCAAATCCCTCCAAACTGACTTGCAA
GTGCAAACAGTGTGGGACAATATCTGGGGCATTGTGCAAGTGGTCTTCTT
GCCGGGGGGGAAGGTGATGACTGTGCACAAGCCGGGCGAGCTCCACGTGT
ATGATTCCATCTACAGCAAGAGCCAG
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Synonyms
Publications