jgi.p|Nanoce1779_2|384639, mRNA_11004 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|384639
Unique NamemRNA_11004
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length703
Alignment locationscaffold_66:78128..78924 +

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Properties
Property NameValue
TranscriptId384725
TrackFilteredModels2
ProteinId384639
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_66supercontigscaffold_66:78128..78924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|384639gene_11004Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|384639mRNA_11004-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11004CDS_11004Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11004 ID=mRNA_11004|Name=jgi.p|Nanoce1779_2|384639|organism=Nannochloropsis oceanica|type=mRNA|length=703bp
CGGCTTGGACCTTCATGCCTTGCCCCCCCTCCCTCCCTCCCTCTCTCCCT
CCCGCCTTCCCACGTCAAGTACACTCAGGACTAAAGCAGTTTTGAAAGCC
AAGCGTCGTGGCGGGCCAGTGTCGCGGGCTTAAAGGCCGCAGAAATCGTC
ACCATCCCTCCCTAACCCCTTTCTTCCTTACTCCTTCCCTCCTTCCTGAC
ATCCCTCCCTCCTTCCCCCCATTAGTAGCCATGAGGACCCTCGTCCTCGT
CGTCCTCCTCCTTCTCCCCCTCGTCGATGCTTGGAGGCCTACGGCAGGCT
GCAGGAGAGCGGCAAGCAGGGGCATGGCTACAACCTGTATGCATGTAGAG
GGACAGCAGCAACCGCAGGAGCTGGAGGGAAAGAAAAGCAGGCGAAGAAG
CCCGGTGGCTCCTCTTTCTCGAGGCCAGCAGCTTCAGAATATGTTTGTGG
CAGCTATAGGCGCGACGACTGCGCTTACTCTTTTGGAAATAGATGCTCGT
CCGGCGAATGCTGCCATGGAGCCCCTCGTCCTACCTGAGCTAGTGACGTA
TGATGATCCGCAGGGAAAGTTCACCTTGAAGGTGCCCAAGGGGTGGTTTA
CAAAGCGGTAAGGAAGGGAGGGAGGGAGGAAGGGAGGGGGGAGAGGGAGG
GAGTGAGGGAAAGAAGCAGTGGAGGGAGGGAGTAAGGGAGAGAGAGAAAA
AAG
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protein sequence of jgi.p|Nanoce1779_2|384639

>mRNA_11004-protein ID=mRNA_11004-protein|Name=jgi.p|Nanoce1779_2|384639|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MRTLVLVVLLLLPLVDAWRPTAGCRRAASRGMATTCMHVEGQQQPQELEG
KKSRRRSPVAPLSRGQQLQNMFVAAIGATTALTLLEIDARPANAAMEPLV
LPELVTYDDPQGKFTLKVPKGWFTKR*
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mRNA from alignment at scaffold_66:78128..78924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11004 ID=mRNA_11004|Name=jgi.p|Nanoce1779_2|384639|organism=Nannochloropsis oceanica|type=mRNA|length=797bp|location=Sequence derived from alignment at scaffold_66:78128..78924+ (Nannochloropsis oceanica)
CGGCTTGGACCTTCATGCCTTGCCCCCCCTCCCTCCCTCCCTCTCTCCCT
CCCGCCTTCCCACGTCAAGTACACTCAGGACTAAAGCAGTTTTGAAAGCC
AAGCGTCGTGGCGGGCCAGTGTCGCGGGCTTAAAGGCCGCAGAAATCGTC
ACCATCCCTCCCTAACCCCTTTCTTCCTTACTCCTTCCCTCCTTCCTGAC
ATCCCTCCCTCCTTCCCCCCATTAGTAGCCATGAGGACCCTCGTCCTCGT
CGTCCTCCTCCTTCTCCCCCTCGTCGATGCTTGGAGGCCTACGGCAGGCT
GCAGGAGAGCGGCAAGCAGGGGCATGGCTACAACCTGTATGCATGTAGAG
GGACAGCAGCAACCGCAGGAGCTGGAGGGAAAGAAAAGCAGGCGAAGAAG
CCCGGTGGCTCCTCTTTCTCGAGGCCAGCAGCTTCAGAATATGTTTGTGG
CAGCTATAGGCGCGACGACTGCGCTTACTCTTTTGGAAATAGATGCTCGT
CCGGCGAATGCTGCCATGGGTAAGAGGGAGGGAGGGGTGGATGAATTTGG
AGTGCATTGCTTTTAGATCCCCTCGCCCATCCTTCCTTCCTTCTCTCCTT
TCCTCTTTTTCAGAGCCCCTCGTCCTACCTGAGCTAGTGACGTATGATGA
TCCGCAGGGAAAGTTCACCTTGAAGGTGCCCAAGGGGTGGTTTACAAAGC
GGTAAGGAAGGGAGGGAGGGAGGAAGGGAGGGGGGAGAGGGAGGGAGTGA
GGGAAAGAAGCAGTGGAGGGAGGGAGTAAGGGAGAGAGAGAAAAAAG
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Coding sequence (CDS) from alignment at scaffold_66:78128..78924+

>mRNA_11004 ID=mRNA_11004|Name=jgi.p|Nanoce1779_2|384639|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_66:78128..78924+ (Nannochloropsis oceanica)
ATGAGGACCCTCGTCCTCGTCGTCCTCCTCCTTCTCCCCCTCGTCGATGC
TTGGAGGCCTACGGCAGGCTGCAGGAGAGCGGCAAGCAGGGGCATGGCTA
CAACCTGTATGCATGTAGAGGGACAGCAGCAACCGCAGGAGCTGGAGGGA
AAGAAAAGCAGGCGAAGAAGCCCGGTGGCTCCTCTTTCTCGAGGCCAGCA
GCTTCAGAATATGTTTGTGGCAGCTATAGGCGCGACGACTGCGCTTACTC
TTTTGGAAATAGATGCTCGTCCGGCGAATGCTGCCATGGAGCCCCTCGTC
CTACCTGAGCTAGTGACGTATGATGATCCGCAGGGAAAGTTCACCTTGAA
GGTGCCCAAGGGGTGGTTTACAAAGCGGTAAATGAGGACCCTCGTCCTCG
TCGTCCTCCTCCTTCTCCCCCTCGTCGATGCTTGGAGGCCTACGGCAGGC
TGCAGGAGAGCGGCAAGCAGGGGCATGGCTACAACCTGTATGCATGTAGA
GGGACAGCAGCAACCGCAGGAGCTGGAGGGAAAGAAAAGCAGGCGAAGAA
GCCCGGTGGCTCCTCTTTCTCGAGGCCAGCAGCTTCAGAATATGTTTGTG
GCAGCTATAGGCGCGACGACTGCGCTTACTCTTTTGGAAATAGATGCTCG
TCCGGCGAATGCTGCCATGGAGCCCCTCGTCCTACCTGAGCTAGTGACGT
ATGATGATCCGCAGGGAAAGTTCACCTTGAAGGTGCCCAAGGGGTGGTTT
ACAAAGCGGTAA
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Synonyms
Publications