jgi.p|Nanoce1779_2|384681, mRNA_11000 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|384681
Unique NamemRNA_11000
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length522
Alignment locationscaffold_66:71983..72584 +

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Properties
Property NameValue
TranscriptId384767
TrackFilteredModels2
ProteinId384681
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_66supercontigscaffold_66:71983..72584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|384681gene_11000Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|384681mRNA_11000-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11000CDS_11000Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11000 ID=mRNA_11000|Name=jgi.p|Nanoce1779_2|384681|organism=Nannochloropsis oceanica|type=mRNA|length=522bp
TTCTTCCTCGCCCGCGTCTCACTTTCCGTTGCTCCTCCTCGTCTCCCTCG
TACTCATCGTATTCTCCTTCTATTTCTTCGTGCGCATAATACCCTTCCCC
GGCATTGCCGCCGAACCCCGTCCCTTTCGCCCATGCGCTCATCGTCGGCC
TTTTTGTCCCCCCCCACGCTGCCGTCGGGGTTTTCTTGGGTTTTTTTGCT
ATCCCCGTTGCTGTTGCGGCGGCTGCTTTCGCCTTCCCTCCCTCCTCATC
CAACAATGCCCGAGTCTTCTCGTTCAACGCGACTGTCTTCAAAAGAGGCA
CACACGGACACTTCTCCCTGTGCCCTCCCTCCCTCTCTCCCTCTCTCCCT
CCCTCCGTCATCCCTGGAAAAATCGTCTCGCACAATCTGCAGACACGGAT
GTCACAAGACTTACACGACACGAAGGCGAATCTATCCCCCTCCCATTCCT
CCATCCAAAATGCCCTCTTCGTCCTCGTAACGTGCCTCCCTCGCCCCCTC
AAGGCCTTCCCGCCCTCCCTGC
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protein sequence of jgi.p|Nanoce1779_2|384681

>mRNA_11000-protein ID=mRNA_11000-protein|Name=jgi.p|Nanoce1779_2|384681|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MRSSSAFLSPPTLPSGFSWVFLLSPLLLRRLLSPSLPPHPTMPESSRSTR
LSSKEAHTDTSPCALPPSLPLSLPPSSLEKSSRTICRHGCHKTYTTRRRI
YPPPIPPSKMPSSSS*
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mRNA from alignment at scaffold_66:71983..72584+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11000 ID=mRNA_11000|Name=jgi.p|Nanoce1779_2|384681|organism=Nannochloropsis oceanica|type=mRNA|length=602bp|location=Sequence derived from alignment at scaffold_66:71983..72584+ (Nannochloropsis oceanica)
TTCTTCCTCGCCCGCGTCTCACTTTCCGTTGCTCCTCCTCCTCTTCCATC
TCCCCCCCCCTCCTCCCCCTCCTCCTCCTCCTCCTCCACCTCCCCATCCC
TCCCCATCATCGTCTTCTTCGTCTCCCTCGTACTCATCGTATTCTCCTTC
TATTTCTTCGTGCGCATAATACCCTTCCCCGGCATTGCCGCCGAACCCCG
TCCCTTTCGCCCATGCGCTCATCGTCGGCCTTTTTGTCCCCCCCCACGCT
GCCGTCGGGGTTTTCTTGGGTTTTTTTGCTATCCCCGTTGCTGTTGCGGC
GGCTGCTTTCGCCTTCCCTCCCTCCTCATCCAACAATGCCCGAGTCTTCT
CGTTCAACGCGACTGTCTTCAAAAGAGGCACACACGGACACTTCTCCCTG
TGCCCTCCCTCCCTCTCTCCCTCTCTCCCTCCCTCCGTCATCCCTGGAAA
AATCGTCTCGCACAATCTGCAGACACGGATGTCACAAGACTTACACGACA
CGAAGGCGAATCTATCCCCCTCCCATTCCTCCATCCAAAATGCCCTCTTC
GTCCTCGTAACGTGCCTCCCTCGCCCCCTCAAGGCCTTCCCGCCCTCCCT
GC
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Coding sequence (CDS) from alignment at scaffold_66:71983..72584+

>mRNA_11000 ID=mRNA_11000|Name=jgi.p|Nanoce1779_2|384681|organism=Nannochloropsis oceanica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_66:71983..72584+ (Nannochloropsis oceanica)
ATGCGCTCATCGTCGGCCTTTTTGTCCCCCCCCACGCTGCCGTCGGGGTT
TTCTTGGGTTTTTTTGCTATCCCCGTTGCTGTTGCGGCGGCTGCTTTCGC
CTTCCCTCCCTCCTCATCCAACAATGCCCGAGTCTTCTCGTTCAACGCGA
CTGTCTTCAAAAGAGGCACACACGGACACTTCTCCCTGTGCCCTCCCTCC
CTCTCTCCCTCTCTCCCTCCCTCCGTCATCCCTGGAAAAATCGTCTCGCA
CAATCTGCAGACACGGATGTCACAAGACTTACACGACACGAAGGCGAATC
TATCCCCCTCCCATTCCTCCATCCAAAATGCCCTCTTCGTCCTCGTAA
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Synonyms
Publications