jgi.p|Nanoce1779_2|575314, mRNA_1100 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575314
Unique NamemRNA_1100
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length475
Alignment locationscaffold_2:1224701..1225251 +

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Properties
Property NameValue
TranscriptId575400
TrackFilteredModels2
ProteinId575314
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1224701..1225251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575314gene_1100Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575314mRNA_1100-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1100CDS_1100Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1100 ID=mRNA_1100|Name=jgi.p|Nanoce1779_2|575314|organism=Nannochloropsis oceanica|type=mRNA|length=475bp
CAGAGCTATCAGTCGATGGCGTCGTTGGAGGACCCCGAGGCGACGCGCCA
CCACTGCCATATAGACCTCCACTTCCCTACGCCTGCGAAGGCCCAACTGG
TCAAAAACGTGTTGGAGATAGACGATGAATTGCAGCCGACCAAGATTCGG
AAGACTTTTGCCGTGGACGGAACGGCGCTAGACGTGCTGCTAGTGTCGTG
TGACCCCAAAGTCTTGCGGGTGGCCGTATCTTCGTTCTACGACATGCTCA
CAGTGGCGCTCAAGACGCTACAGGAATTTGACGAAAAATAAATAGATCAG
CGAGATAGTGCGCGTGGAAAAGAGAGGAAGGAGGATCACGTTTGCCTGTA
ATGAGGGAAAAGAGGAGGGAAATCTAAGTGATGTTTGACGATAAAATGGC
ACGATCAAAACATTACGTGTGCATAGGTTTATGTATTTTCACAAAGATAA
CAAAACAAACTCAATTACAGAGGGC
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protein sequence of jgi.p|Nanoce1779_2|575314

>mRNA_1100-protein ID=mRNA_1100-protein|Name=jgi.p|Nanoce1779_2|575314|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MASLEDPEATRHHCHIDLHFPTPAKAQLVKNVLEIDDELQPTKIRKTFAV
DGTALDVLLVSCDPKVLRVAVSSFYDMLTVALKTLQEFDEK*
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mRNA from alignment at scaffold_2:1224701..1225251+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1100 ID=mRNA_1100|Name=jgi.p|Nanoce1779_2|575314|organism=Nannochloropsis oceanica|type=mRNA|length=551bp|location=Sequence derived from alignment at scaffold_2:1224701..1225251+ (Nannochloropsis oceanica)
CAGAGCTATCAGTCGATGGCGTCGTTGGAGGACCCCGAGGCGACGCGCCA
CCACTGGTAAGTACCCGACGAAAGCGTCCTACACTCCATACTCCTTCAAC
CCCTCCCTCCCTCCCTCCCCTCCCCACCATAGCCATATAGACCTCCACTT
CCCTACGCCTGCGAAGGCCCAACTGGTCAAAAACGTGTTGGAGATAGACG
ATGAATTGCAGCCGACCAAGATTCGGAAGACTTTTGCCGTGGACGGAACG
GCGCTAGACGTGCTGCTAGTGTCGTGTGACCCCAAAGTCTTGCGGGTGGC
CGTATCTTCGTTCTACGACATGCTCACAGTGGCGCTCAAGACGCTACAGG
AATTTGACGAAAAATAAATAGATCAGCGAGATAGTGCGCGTGGAAAAGAG
AGGAAGGAGGATCACGTTTGCCTGTAATGAGGGAAAAGAGGAGGGAAATC
TAAGTGATGTTTGACGATAAAATGGCACGATCAAAACATTACGTGTGCAT
AGGTTTATGTATTTTCACAAAGATAACAAAACAAACTCAATTACAGAGGG
C
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Coding sequence (CDS) from alignment at scaffold_2:1224701..1225251+

>mRNA_1100 ID=mRNA_1100|Name=jgi.p|Nanoce1779_2|575314|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_2:1224701..1225251+ (Nannochloropsis oceanica)
ATGGCGTCGTTGGAGGACCCCGAGGCGACGCGCCACCACTGCCATATAGA
CCTCCACTTCCCTACGCCTGCGAAGGCCCAACTGGTCAAAAACGTGTTGG
AGATAGACGATGAATTGCAGCCGACCAAGATTCGGAAGACTTTTGCCGTG
GACGGAACGGCGCTAGACGTGCTGCTAGTGTCGTGTGACCCCAAAGTCTT
GCGGGTGGCCGTATCTTCGTTCTACGACATGCTCACAGTGGCGCTCAAGA
CGCTACAGGAATTTGACGAAAAATAAATGGCGTCGTTGGAGGACCCCGAG
GCGACGCGCCACCACTGCCATATAGACCTCCACTTCCCTACGCCTGCGAA
GGCCCAACTGGTCAAAAACGTGTTGGAGATAGACGATGAATTGCAGCCGA
CCAAGATTCGGAAGACTTTTGCCGTGGACGGAACGGCGCTAGACGTGCTG
CTAGTGTCGTGTGACCCCAAAGTCTTGCGGGTGGCCGTATCTTCGTTCTA
CGACATGCTCACAGTGGCGCTCAAGACGCTACAGGAATTTGACGAAAAAT
AA
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Synonyms
Publications