jgi.p|Nanoce1779_2|576248, mRNA_110 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576248
Unique Name	mRNA_110
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1343
Alignment location	scaffold_3:292603..294386 -

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Properties


Property Name	Value
TranscriptId	576334
Track	FilteredModels2
ProteinId	576248

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:292603..294386 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576248	gene_110	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576248	mRNA_110-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_110	CDS_110	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:292603..294386-
coding sequence from alignment at scaffold_3:292603..294386-

mRNA sequence

>mRNA_110 ID=mRNA_110|Name=jgi.p|Nanoce1779_2|576248|organism=Nannochloropsis oceanica|type=mRNA|length=1343bp
CGCAAGTGTTGAGCGTGTCCGTTGTGCATGAGATTGGGATTGGCCCTGCA
GCCGGACGTCATGTGCATGTATTGCGACAAACGCTTCTTCACGAGGGATG
AGCAAGTCCTGTATGATCCCGTCCCGTCGAACCCCTAGAGCATGGGGCGT
TACGGACTACAAACGTTCGGTCTTGAAATACACATTTTGGAATCACCCTT
TGACTCGTTTTGAGGTCGTAATCTTGTTTTTGGCTCTGGTTGCTTACAAG
CTTCTGCCTTGGTGGCGGGCAGACCCAAGCTAGCTCAACACAACACAACC
AACACAACGATAGTGCGGGTGCCGCAGGAAACAGACAACCCAACTTGCCT
TTCTCCTTTCCATCTCGATTTTATTCCTCGCCCTCGCCTTCCTTCTCCTT
TCGCATTGCTTCCTCGTTGTCGTCATGGCGTCCCACCCCTCAACTGAGGA
GGCGGCCACCAAGAAGATAGCCATCGTGACAGGTGCCGCTGGAACGTTGG
GAGAATCCATCACTCGCATGCTACTTGACGAGGGGTATCTCGTAGCTGCC
CTGGATAATAGGACCGAGGGCCTGGCGGGATTGAGAACTCGCCTCGACGA
CAAAGCCGATCGTCTCCATCCCTTTACTGTTGATATCTCGTCCGCCCCGG
CGGTTGAGGAAGTGTGCCACACCATCCTCACTCGCTTCGGGGCTGTCTCT
GTCCTGGTGAACAATGCAGGCTTGCTCTCCAAAAACAAGTGTGTCGAAAC
CAACCTTGCAGAATGGCGTCGCGTTATACACGTTAACCTCGATGGAGCGT
TTTTCCTCTCGCAGCAGCTGCTCCCATGCATGCGCTTGATGCACTACGGG
CGGATCGTAAACATAACATCCATGGCGGCGAAGACTGGGGGAGTCACAGC
AGGCACGGCATACGCCGTCAGCAAAGGGGCTTTGAGTAGTCTAACATTTT
CCTTGGCAAGAGAAACGGCGCGCGACGGCATCACCGTGAATGGGATTGCG
CCTGCGTACGTCAAGACGCCCATGGTTATGGACCAGCTGACGGAAGAGCA
ACGTGAGCAAGTGCTTGCTAACATTCCGGTGGGAAGATTTTGTGAAGCGG
AGGAGGTGGCTCATACCGTCCGGTTTTTAATCTCGCCGTTGGCGGGCTTT
ATCACCGGGGAGTTGATTGACCAGAATGGGGGATATCACATGGATTGAGA
AATCAGAAAGGTAACACATACATTAGACTTCAAATGGACCGAAAAATAGA
TGAAATCAATTAACGGCAAATACGAAAAGGACAATGAAACGAGGCGAATG
AAACGGTCCGCGCGTTATAATTCCACACATAAGTGCTGTGTAT

protein sequence of jgi.p|Nanoce1779_2|576248

>mRNA_110-protein ID=mRNA_110-protein|Name=jgi.p|Nanoce1779_2|576248|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MASHPSTEEAATKKIAIVTGAAGTLGESITRMLLDEGYLVAALDNRTEGL
AGLRTRLDDKADRLHPFTVDISSAPAVEEVCHTILTRFGAVSVLVNNAGL
LSKNKCVETNLAEWRRVIHVNLDGAFFLSQQLLPCMRLMHYGRIVNITSM
AAKTGGVTAGTAYAVSKGALSSLTFSLARETARDGITVNGIAPAYVKTPM
VMDQLTEEQREQVLANIPVGRFCEAEEVAHTVRFLISPLAGFITGELIDQ
NGGYHMD*

mRNA from alignment at scaffold_3:292603..294386-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_110 ID=mRNA_110|Name=jgi.p|Nanoce1779_2|576248|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp|location=Sequence derived from alignment at scaffold_3:292603..294386- (Nannochloropsis oceanica)
CGCAAGTGTTGAGCGTGTCCGTTGTGCATGAGATTGGGATTGGCCCTGCA
GCCGGACGTCATGTGCATGTATTGCGACAAACGCTTCTTCACGAGGGATG
AGCAAGTCCTGTATGATCCCGTCCCGTCGAACCCCTAGAGCATGGGGCGT
TACGGACTACAAACGTTCGGTCTTGAAATACACATTTTGGAATCACCCTT
TGACTCGTTTTGAGGTCGTAATCTTGTTTTTGGCTCTGGTTGCTTACAAG
CTTCTGCCTTGGTGGCGGGCAGACCCAAGCTAGCTCAACACAACACAACC
AACACAACGATAGTGCGGGTGCCGCAGGAAACAGACAACCCAACTTGCCT
TTCTCCTTTCCATCTCGATTTTATTCCTCGCCCTCGCCTTCCTTCTCCTT
TCGCATTGCTTCCTCGTTGTCGTCATGGCGTCCCACCCCTCAACTGAGGA
GGCGGCCACCAAGAAGGTGCGTTCACCAAAGGAGGAGGGGGAATGGGGAG
GTTGGGTTATATTGTCAGGTCACAGTCCATTCATCATCCGTTGCACACAA
GCATGAGGCAAGTACGCCTTTGATCGCAATCAGCGGCCATCCGTCACTCA
ATGGAGCTTTTTGTAAGCGTCTGCCTGCGTAGTCCCCCCTAAGTTCTACC
CCAGCGCTCACCCCTTTCGACCTCCCCAACACAGATAGCCATCGTGACAG
GTGCCGCTGGAACGTTGGGAGAATCCATCACTCGCATGCTACTTGACGAG
GGGTATCTCGTAGCTGCCCTGGATAATAGGACCGAGGGCCTGGCGGGATT
GAGAACTCGCCTCGACGACAAAGCCGATCGTCTCCATCCCTTTACTGTTG
ATATCTCGTCCGCCCCGGCGGTTGAGGAAGTGTGCCACACCATCCTCACT
CGCTTCGGGGCTGTCTCTGTCCTGGTGAACAATGCAGGCTTGCTCTCCAA
AAACAAGTGTGTCGAAACCAACCTTGCAGAATGGCGTCGCGTTATACACG
TTAACCTCGATGGAGCGTTTTTCCTCTCGCAGCAGCTGCTCCCATGCATG
CGCTTGATGCACTACGGGCGGATCGTAAACATAACATCCATGGCGGCGAA
GACTGGGGGAGTCACAGCAGGCACGGCATACGCCGTCAGCAAAGGGGCTT
TGAGTAGTCTAACATTTTCCTTGGCAAGAGAAACGGTAAGAGATCTACAC
CTGGCGTTATTGAGAGAGAAATCGCACACAAAGTTGCCCCCCTTCCTGCC
TCTTTCATGCTTCCCTTGCCTAGGCGCGCGACGGCATCACCGTGAATGGG
ATTGCGCCTGCGTACGTCAAGACGCCCATGGTTATGGACCAGCTGACGGA
AGAGCAACGTGAGCAAGTGCTTGCTAACATTCCGGTGGGAAGATTTTGTG
AAGCGGAGGAGGTGGCTCATACCGTCCGGTTTTTAATCTCGCCGTTGGCG
GGCTTTATCACCGGGGAGGTAGGTAGGTAGGTTGGAAGGGAGGGGAGGGA
CGGGAAACGTGACTTGTAATTTTATCCCGTCACGTTTACGGCCTTTATCG
ATTATTACGTCCCGCTCTCAATGCTTCTTTCCCACCCTCCTTCAAACATA
CAGTTGATTGACCAGAATGGGGGATATCACATGGATTGAGAAATCAGAAA
GGTAACACATACATTAGACTTCAAATGGACCGAAAAATAGATGAAATCAA
TTAACGGCAAATACGAAAAGGACAATGAAACGAGGCGAATGAAACGGTCC
GCGCGTTATAATTCCACACATAAGTGCTGTGTAT

Coding sequence (CDS) from alignment at scaffold_3:292603..294386-

>mRNA_110 ID=mRNA_110|Name=jgi.p|Nanoce1779_2|576248|organism=Nannochloropsis oceanica|type=CDS|length=3096bp|location=Sequence derived from alignment at scaffold_3:292603..294386- (Nannochloropsis oceanica)
TTGATTGACCAGAATGGGGGATATCACATGGATTGAGCGCGCGACGGCAT
CACCGTGAATGGGATTGCGCCTGCGTACGTCAAGACGCCCATGGTTATGG
ACCAGCTGACGGAAGAGCAACGTGAGCAAGTGCTTGCTAACATTCCGGTG
GGAAGATTTTGTGAAGCGGAGGAGGTGGCTCATACCGTCCGGTTTTTAAT
CTCGCCGTTGGCGGGCTTTATCACCGGGGAGATAGCCATCGTGACAGGTG
CCGCTGGAACGTTGGGAGAATCCATCACTCGCATGCTACTTGACGAGGGG
TATCTCGTAGCTGCCCTGGATAATAGGACCGAGGGCCTGGCGGGATTGAG
AACTCGCCTCGACGACAAAGCCGATCGTCTCCATCCCTTTACTGTTGATA
TCTCGTCCGCCCCGGCGGTTGAGGAAGTGTGCCACACCATCCTCACTCGC
TTCGGGGCTGTCTCTGTCCTGGTGAACAATGCAGGCTTGCTCTCCAAAAA
CAAGTGTGTCGAAACCAACCTTGCAGAATGGCGTCGCGTTATACACGTTA
ACCTCGATGGAGCGTTTTTCCTCTCGCAGCAGCTGCTCCCATGCATGCGC
TTGATGCACTACGGGCGGATCGTAAACATAACATCCATGGCGGCGAAGAC
TGGGGGAGTCACAGCAGGCACGGCATACGCCGTCAGCAAAGGGGCTTTGA
GTAGTCTAACATTTTCCTTGGCAAGAGAAACGATGGCGTCCCACCCCTCA
ACTGAGGAGGCGGCCACCAAGAAGTTGATTGACCAGAATGGGGGATATCA
CATGGATTGAGCGCGCGACGGCATCACCGTGAATGGGATTGCGCCTGCGT
ACGTCAAGACGCCCATGGTTATGGACCAGCTGACGGAAGAGCAACGTGAG
CAAGTGCTTGCTAACATTCCGGTGGGAAGATTTTGTGAAGCGGAGGAGGT
GGCTCATACCGTCCGGTTTTTAATCTCGCCGTTGGCGGGCTTTATCACCG
GGGAGATAGCCATCGTGACAGGTGCCGCTGGAACGTTGGGAGAATCCATC
ACTCGCATGCTACTTGACGAGGGGTATCTCGTAGCTGCCCTGGATAATAG
GACCGAGGGCCTGGCGGGATTGAGAACTCGCCTCGACGACAAAGCCGATC
GTCTCCATCCCTTTACTGTTGATATCTCGTCCGCCCCGGCGGTTGAGGAA
GTGTGCCACACCATCCTCACTCGCTTCGGGGCTGTCTCTGTCCTGGTGAA
CAATGCAGGCTTGCTCTCCAAAAACAAGTGTGTCGAAACCAACCTTGCAG
AATGGCGTCGCGTTATACACGTTAACCTCGATGGAGCGTTTTTCCTCTCG
CAGCAGCTGCTCCCATGCATGCGCTTGATGCACTACGGGCGGATCGTAAA
CATAACATCCATGGCGGCGAAGACTGGGGGAGTCACAGCAGGCACGGCAT
ACGCCGTCAGCAAAGGGGCTTTGAGTAGTCTAACATTTTCCTTGGCAAGA
GAAACGATGGCGTCCCACCCCTCAACTGAGGAGGCGGCCACCAAGAAGTT
GATTGACCAGAATGGGGGATATCACATGGATTGAGCGCGCGACGGCATCA
CCGTGAATGGGATTGCGCCTGCGTACGTCAAGACGCCCATGGTTATGGAC
CAGCTGACGGAAGAGCAACGTGAGCAAGTGCTTGCTAACATTCCGGTGGG
AAGATTTTGTGAAGCGGAGGAGGTGGCTCATACCGTCCGGTTTTTAATCT
CGCCGTTGGCGGGCTTTATCACCGGGGAGATAGCCATCGTGACAGGTGCC
GCTGGAACGTTGGGAGAATCCATCACTCGCATGCTACTTGACGAGGGGTA
TCTCGTAGCTGCCCTGGATAATAGGACCGAGGGCCTGGCGGGATTGAGAA
CTCGCCTCGACGACAAAGCCGATCGTCTCCATCCCTTTACTGTTGATATC
TCGTCCGCCCCGGCGGTTGAGGAAGTGTGCCACACCATCCTCACTCGCTT
CGGGGCTGTCTCTGTCCTGGTGAACAATGCAGGCTTGCTCTCCAAAAACA
AGTGTGTCGAAACCAACCTTGCAGAATGGCGTCGCGTTATACACGTTAAC
CTCGATGGAGCGTTTTTCCTCTCGCAGCAGCTGCTCCCATGCATGCGCTT
GATGCACTACGGGCGGATCGTAAACATAACATCCATGGCGGCGAAGACTG
GGGGAGTCACAGCAGGCACGGCATACGCCGTCAGCAAAGGGGCTTTGAGT
AGTCTAACATTTTCCTTGGCAAGAGAAACGATGGCGTCCCACCCCTCAAC
TGAGGAGGCGGCCACCAAGAAGTTGATTGACCAGAATGGGGGATATCACA
TGGATTGAGCGCGCGACGGCATCACCGTGAATGGGATTGCGCCTGCGTAC
GTCAAGACGCCCATGGTTATGGACCAGCTGACGGAAGAGCAACGTGAGCA
AGTGCTTGCTAACATTCCGGTGGGAAGATTTTGTGAAGCGGAGGAGGTGG
CTCATACCGTCCGGTTTTTAATCTCGCCGTTGGCGGGCTTTATCACCGGG
GAGATAGCCATCGTGACAGGTGCCGCTGGAACGTTGGGAGAATCCATCAC
TCGCATGCTACTTGACGAGGGGTATCTCGTAGCTGCCCTGGATAATAGGA
CCGAGGGCCTGGCGGGATTGAGAACTCGCCTCGACGACAAAGCCGATCGT
CTCCATCCCTTTACTGTTGATATCTCGTCCGCCCCGGCGGTTGAGGAAGT
GTGCCACACCATCCTCACTCGCTTCGGGGCTGTCTCTGTCCTGGTGAACA
ATGCAGGCTTGCTCTCCAAAAACAAGTGTGTCGAAACCAACCTTGCAGAA
TGGCGTCGCGTTATACACGTTAACCTCGATGGAGCGTTTTTCCTCTCGCA
GCAGCTGCTCCCATGCATGCGCTTGATGCACTACGGGCGGATCGTAAACA
TAACATCCATGGCGGCGAAGACTGGGGGAGTCACAGCAGGCACGGCATAC
GCCGTCAGCAAAGGGGCTTTGAGTAGTCTAACATTTTCCTTGGCAAGAGA
AACGATGGCGTCCCACCCCTCAACTGAGGAGGCGGCCACCAAGAAG

Synonyms

Publications