jgi.p|Nanoce1779_2|643513, mRNA_10997 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|643513
Unique NamemRNA_10997
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length267
Alignment locationscaffold_66:65017..65818 -

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Properties
Property NameValue
TranscriptId643599
TrackFilteredModels2
ProteinId643513
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_66supercontigscaffold_66:65017..65818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643513gene_10997Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643513mRNA_10997-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10997CDS_10997Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10997 ID=mRNA_10997|Name=jgi.p|Nanoce1779_2|643513|organism=Nannochloropsis oceanica|type=mRNA|length=267bp
ATGTCCACCGAAGAAAAGGTCAAGGCTGAAGGCGGCTCGGGTTCGACCGA
GCACATCGTCCTCCGTGTCCGTGACCAGACGGGCGAGGAAATCCAGTTCA
AGGTCAAGCCCACTACCAAGATGGAAAAAATCCTGAACGCCTATGCGGAC
CGTAAGGGTGTCAGTGTCGCCGCCCTCCGCTTCATGGTCGACGGAGAACG
CATCAACCCGACGGACACGCCCAGCACGCTGGAACTCGAGAACGACGACC
AAGTGGACGTACGTTAA
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protein sequence of jgi.p|Nanoce1779_2|643513

>mRNA_10997-protein ID=mRNA_10997-protein|Name=jgi.p|Nanoce1779_2|643513|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MSTEEKVKAEGGSGSTEHIVLRVRDQTGEEIQFKVKPTTKMEKILNAYAD
RKGVSVAALRFMVDGERINPTDTPSTLELENDDQVDVR*
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mRNA from alignment at scaffold_66:65017..65818-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10997 ID=mRNA_10997|Name=jgi.p|Nanoce1779_2|643513|organism=Nannochloropsis oceanica|type=mRNA|length=802bp|location=Sequence derived from alignment at scaffold_66:65017..65818- (Nannochloropsis oceanica)
ATGTCCACCGAAGAAAAGGTCAAGGCTGAAGGCGGCTCGGGTTCGACCGA
GCACATCGTCCTCCGTGTCCGTGACCAGACGGGCGAGGAAATCCAGTTCA
AGGTCCGTGGAGCGATGGGAACGAGTGGAGAGAGAGGGCTATCATGCGGA
AAGGGGAAAGGAGTTGAGGGAGGAAAGGAGGGGGGGGGCGTGCGTTGGTG
GGGATAGAAAAAGGACGAGGACGGAGAACGAGAGGATGAGGGCGAGAGAG
AAATATCAATTTAGCGTAAGACGCTCATACTATTGTGCTTCCTCTTGACT
ATCAGTGCCGAGTCCGTCCACCCTCACATTTCCCTCCATCCCTCCCTCTC
CCCTTCCCTCGCTCCCTCCCTCCCTCTCACGCCCTCCCCTCAGGTCAAGC
CCACTACCAAGATGGAAAAAATCCTGAACGCCTATGCGGACCGTAAGGGT
GTCAGTGTCGCCGCCCTCCGCTTCATGGTCGACGGAGAACGGTGCGTCCT
CTGCCCTCCTTCCCTTCCTCCCTCCTCTCCTCCCCTCTATCGAGATATGC
TTGACCTCGGGTGATGGATCAAAAGCGAAGGAGGGAGGAAAGGAAAGAGA
GACATTGGATGTGAAGAATGGATGCCAGGAAAAGAATATCTTTGTGGCTG
GTATGTAGAAAATATGAGACTTACTTTCCTTCCTCCCTCTTCCCTCCCTC
CCTCCTTCCCTCCCTTCTTTCCTCCCTCCCTTTAGCATCAACCCGACGGA
CACGCCCAGCACGCTGGAACTCGAGAACGACGACCAAGTGGACGTACGTT
AA
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Coding sequence (CDS) from alignment at scaffold_66:65017..65818-

>mRNA_10997 ID=mRNA_10997|Name=jgi.p|Nanoce1779_2|643513|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at scaffold_66:65017..65818- (Nannochloropsis oceanica)
CATCAACCCGACGGACACGCCCAGCACGCTGGAACTCGAGAACGACGACC
AAGTGGACGTACGTTAAGTCAAGCCCACTACCAAGATGGAAAAAATCCTG
AACGCCTATGCGGACCGTAAGGGTGTCAGTGTCGCCGCCCTCCGCTTCAT
GGTCGACGGAGAACGATGTCCACCGAAGAAAAGGTCAAGGCTGAAGGCGG
CTCGGGTTCGACCGAGCACATCGTCCTCCGTGTCCGTGACCAGACGGGCG
AGGAAATCCAGTTCAAGCATCAACCCGACGGACACGCCCAGCACGCTGGA
ACTCGAGAACGACGACCAAGTGGACGTACGTTAAGTCAAGCCCACTACCA
AGATGGAAAAAATCCTGAACGCCTATGCGGACCGTAAGGGTGTCAGTGTC
GCCGCCCTCCGCTTCATGGTCGACGGAGAACGATGTCCACCGAAGAAAAG
GTCAAGGCTGAAGGCGGCTCGGGTTCGACCGAGCACATCGTCCTCCGTGT
CCGTGACCAGACGGGCGAGGAAATCCAGTTCAAGCATCAACCCGACGGAC
ACGCCCAGCACGCTGGAACTCGAGAACGACGACCAAGTGGACGTACGTTA
AGTCAAGCCCACTACCAAGATGGAAAAAATCCTGAACGCCTATGCGGACC
GTAAGGGTGTCAGTGTCGCCGCCCTCCGCTTCATGGTCGACGGAGAACGA
TGTCCACCGAAGAAAAGGTCAAGGCTGAAGGCGGCTCGGGTTCGACCGAG
CACATCGTCCTCCGTGTCCGTGACCAGACGGGCGAGGAAATCCAGTTCAA
G
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Synonyms
Publications