jgi.p|Nanoce1779_2|612637, mRNA_10992 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612637
Unique NamemRNA_10992
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length552
Alignment locationscaffold_66:45051..46452 +

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Properties
Property NameValue
TranscriptId612723
TrackFilteredModels2
ProteinId612637
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_66supercontigscaffold_66:45051..46452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612637gene_10992Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612637mRNA_10992-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10992CDS_10992Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10992 ID=mRNA_10992|Name=jgi.p|Nanoce1779_2|612637|organism=Nannochloropsis oceanica|type=mRNA|length=552bp
CAGAGTATCATGGCAGCAGGCAAATCCGACAAGGCCAGCAAGGCAAAGCA
AGTGGGCAAGACCCTGAAGAAGGGCATGTCGGTGCGGAAGACGCGCGTGC
ACACTAAGGTCCACTTCTACAGGCCCAAGACTCTGAAGCTTGACCGCCAG
CCCAAGTACGCCCGCAAGTCTGTGCCCCACCTGCAGAAGATGGACAAGTA
CCGCCTCATCCGCTACCCCTTGACCACCGAATCGGCCATGAAGAAGATCG
AAGACAACAACACCCTCGTGTTTATCGTTGACCTCACCGCCAACAAGCGC
CAAATTAAGGCCGCCGTCAAGGAGCTTTACGACATCCAGCCTGCCAAGGT
CAACACCCTCATCCGCCCTGACGGCCTTAAGAAGGCTTATGTCCGACTAG
CCCAGGACAGTGACGCCCTGGATGTGGCCAACAAGATCGGCATCATCTAA
AGCGGCAGCAGCAGCAGCAACAGCAACAGCAGTTGCAGCAGCGGCAGCTG
TTGTAGTGCTTCCTTCCCTCCTTTCCTCCCTCCCTTCCTCTTTTGACAGA
AT
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protein sequence of jgi.p|Nanoce1779_2|612637

>mRNA_10992-protein ID=mRNA_10992-protein|Name=jgi.p|Nanoce1779_2|612637|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MAAGKSDKASKAKQVGKTLKKGMSVRKTRVHTKVHFYRPKTLKLDRQPKY
ARKSVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK
AAVKELYDIQPAKVNTLIRPDGLKKAYVRLAQDSDALDVANKIGII*
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mRNA from alignment at scaffold_66:45051..46452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10992 ID=mRNA_10992|Name=jgi.p|Nanoce1779_2|612637|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp|location=Sequence derived from alignment at scaffold_66:45051..46452+ (Nannochloropsis oceanica)
CAGAGTATCATGGCAGCAGGCAAATCCGACAAGGCCAGCAAGGCAAAGCA
AGTGGGCAAGACCCTGAAGAAGGGCATGTCGGTGCGGAAGACGCGCGTGC
ACACTAAGGTCCACTTCTACAGGCCCAAGACTCTGAAGCTTGACCGCCAG
CCCAAGGTAGGTGGAGAGGCGAGGGAGGGAAGGAGGAGGAGGAGGCAAGC
CGCAGCAGCAGCGAGAAGGTAGTGGCGCAGAGAGGCTTCTAGCTGGAGAA
GGGTCTGAGCAGGGGGATGAAGGGAGATACACCATTGCGTGTGGATAGGG
TGGAAGCCGAAGGGGGGGAAGGAGCGATGAACATGGTTAGCGTCATCTAA
TTGACCGCTGCTGTCAGTGCTTGCCCTACAATGTTACCTTAAACTTAATG
TACTCCCTTCCCCCCTCCCTCCCGTCCCCTCTTCCCCCTTTTTCCCCTCC
ACCCCAGTACGCCCGCAAGTCTGTGCCCCACCTGCAGAAGATGGACAAGT
ACCGCCTCATCCGCTACCCCTTGACCACCGGTACGGCCCTCCCTCCCTCC
CTCCCTTCTTTCCTTGAACTTCTAGGAGATCTGTCTTGATTCTGAAACAT
AGAACGATCCGCCTGACCCCTCCTTCCCTCCCACCCTCCTTCCCTGCCTC
TCTCCCTCCTTCCCCCGCTCCCCAGAATCGGCCATGAAGAAGATCGAAGA
CAACAACACCCTCGTGTTTATCGTTGACCTCACCGCCAACAAGCGCCAAA
TTAAGGTACGCCGTCCCTCCCTCACTCCCTCTCCATCGTCCCCCACCCCC
TCCTCCCGCACTTCTGCCCTCCCTTCATTTCTACCTCCCTCCCATCCCGT
ATTTGTACCACCAAAAAATCACCTCCTCCCTCCCGTCCTCCCGTCCTCCC
TCCCTCCCTCCCTCCCTCTGCAGGCCGCCGTCAAGGAGCTTTACGACATC
CAGCCTGCCAAGGTCAACACCCTCATCCGGTAAGAAGGGAAGGAGGGAAC
GCGGGAGGGAAAGAGGAAAAGAGGAAAGGAAGGAGTGGGAGGAACAGGCT
TGTTGACTGAGTAGCGTGGCTTCTCCTCCCTCCCTCCCTCCCTCCCTCCC
TTCCTCCATGTGTAATAACTATATCAAAACGTGGTCCACTCACCCCTCCC
TCCCTCCCTCCCTCCCCCCGTCCCTCCAACCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCAGCCCTGACGGCCTTAAGAAGGCTTATGTCCGACTAG
CCCAGGACAGTGACGCCCTGGATGTGGCCAACAAGATCGGCATCATCTAA
AGCGGCAGCAGCAGCAGCAACAGCAACAGCAGTTGCAGCAGCGGCAGCTG
TTGTAGTGCTTCCTTCCCTCCTTTCCTCCCTCCCTTCCTCTTTTGACAGA
AT
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Coding sequence (CDS) from alignment at scaffold_66:45051..46452+

>mRNA_10992 ID=mRNA_10992|Name=jgi.p|Nanoce1779_2|612637|organism=Nannochloropsis oceanica|type=CDS|length=2205bp|location=Sequence derived from alignment at scaffold_66:45051..46452+ (Nannochloropsis oceanica)
ATGGCAGCAGGCAAATCCGACAAGGCCAGCAAGGCAAAGCAAGTGGGCAA
GACCCTGAAGAAGGGCATGTCGGTGCGGAAGACGCGCGTGCACACTAAGG
TCCACTTCTACAGGCCCAAGACTCTGAAGCTTGACCGCCAGCCCAAGTAC
GCCCGCAAGTCTGTGCCCCACCTGCAGAAGATGGACAAGTACCGCCTCAT
CCGCTACCCCTTGACCACCGAATCGGCCATGAAGAAGATCGAAGACAACA
ACACCCTCGTGTTTATCGTTGACCTCACCGCCAACAAGCGCCAAATTAAG
GCCGCCGTCAAGGAGCTTTACGACATCCAGCCTGCCAAGGTCAACACCCT
CATCCGCCCTGACGGCCTTAAGAAGGCTTATGTCCGACTAGCCCAGGACA
GTGACGCCCTGGATGTGGCCAACAAGATCGGCATCATCTAAATGGCAGCA
GGCAAATCCGACAAGGCCAGCAAGGCAAAGCAAGTGGGCAAGACCCTGAA
GAAGGGCATGTCGGTGCGGAAGACGCGCGTGCACACTAAGGTCCACTTCT
ACAGGCCCAAGACTCTGAAGCTTGACCGCCAGCCCAAGTACGCCCGCAAG
TCTGTGCCCCACCTGCAGAAGATGGACAAGTACCGCCTCATCCGCTACCC
CTTGACCACCGAATCGGCCATGAAGAAGATCGAAGACAACAACACCCTCG
TGTTTATCGTTGACCTCACCGCCAACAAGCGCCAAATTAAGGCCGCCGTC
AAGGAGCTTTACGACATCCAGCCTGCCAAGGTCAACACCCTCATCCGCCC
TGACGGCCTTAAGAAGGCTTATGTCCGACTAGCCCAGGACAGTGACGCCC
TGGATGTGGCCAACAAGATCGGCATCATCTAAATGGCAGCAGGCAAATCC
GACAAGGCCAGCAAGGCAAAGCAAGTGGGCAAGACCCTGAAGAAGGGCAT
GTCGGTGCGGAAGACGCGCGTGCACACTAAGGTCCACTTCTACAGGCCCA
AGACTCTGAAGCTTGACCGCCAGCCCAAGTACGCCCGCAAGTCTGTGCCC
CACCTGCAGAAGATGGACAAGTACCGCCTCATCCGCTACCCCTTGACCAC
CGAATCGGCCATGAAGAAGATCGAAGACAACAACACCCTCGTGTTTATCG
TTGACCTCACCGCCAACAAGCGCCAAATTAAGGCCGCCGTCAAGGAGCTT
TACGACATCCAGCCTGCCAAGGTCAACACCCTCATCCGCCCTGACGGCCT
TAAGAAGGCTTATGTCCGACTAGCCCAGGACAGTGACGCCCTGGATGTGG
CCAACAAGATCGGCATCATCTAAATGGCAGCAGGCAAATCCGACAAGGCC
AGCAAGGCAAAGCAAGTGGGCAAGACCCTGAAGAAGGGCATGTCGGTGCG
GAAGACGCGCGTGCACACTAAGGTCCACTTCTACAGGCCCAAGACTCTGA
AGCTTGACCGCCAGCCCAAGTACGCCCGCAAGTCTGTGCCCCACCTGCAG
AAGATGGACAAGTACCGCCTCATCCGCTACCCCTTGACCACCGAATCGGC
CATGAAGAAGATCGAAGACAACAACACCCTCGTGTTTATCGTTGACCTCA
CCGCCAACAAGCGCCAAATTAAGGCCGCCGTCAAGGAGCTTTACGACATC
CAGCCTGCCAAGGTCAACACCCTCATCCGCCCTGACGGCCTTAAGAAGGC
TTATGTCCGACTAGCCCAGGACAGTGACGCCCTGGATGTGGCCAACAAGA
TCGGCATCATCTAAATGGCAGCAGGCAAATCCGACAAGGCCAGCAAGGCA
AAGCAAGTGGGCAAGACCCTGAAGAAGGGCATGTCGGTGCGGAAGACGCG
CGTGCACACTAAGGTCCACTTCTACAGGCCCAAGACTCTGAAGCTTGACC
GCCAGCCCAAGTACGCCCGCAAGTCTGTGCCCCACCTGCAGAAGATGGAC
AAGTACCGCCTCATCCGCTACCCCTTGACCACCGAATCGGCCATGAAGAA
GATCGAAGACAACAACACCCTCGTGTTTATCGTTGACCTCACCGCCAACA
AGCGCCAAATTAAGGCCGCCGTCAAGGAGCTTTACGACATCCAGCCTGCC
AAGGTCAACACCCTCATCCGCCCTGACGGCCTTAAGAAGGCTTATGTCCG
ACTAGCCCAGGACAGTGACGCCCTGGATGTGGCCAACAAGATCGGCATCA
TCTAA
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Synonyms
Publications