jgi.p|Nanoce1779_2|575308, mRNA_1098 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575308
Unique Name	mRNA_1098
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1620
Alignment location	scaffold_2:1221399..1223098 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575394
Track	FilteredModels2
ProteinId	575308

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1221399..1223098 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575308	gene_1098	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575308	mRNA_1098-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1098	CDS_1098	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1221399..1223098+
coding sequence from alignment at scaffold_2:1221399..1223098+

mRNA sequence

>mRNA_1098 ID=mRNA_1098|Name=jgi.p|Nanoce1779_2|575308|organism=Nannochloropsis oceanica|type=mRNA|length=1620bp
ACAGCTTCGCCCAGGTAACGACCACCATGACGGCCAGCACCGTCACCACT
GCGAGTCACAACGACGATGACAACGCCCAAGACAAGGTCAACCAAGGCCA
GGCGGCCCTGCAAGCCCGGGTGATCTTGACGGAACTCATCGAAGCCGCGG
CTAGTAATGACACGGCCAAACTCGATGTCTTGCTTCAGCAAGAAAGGGCC
CGGCATCCCGACTTAAAAGACGACCCTGCTATCTTTCTACGTCAATATAA
AGACGCTAATGGTCGTACAGCTTTGCATTTCGCCTGCCACGCGGGGCAGG
TGGAGATGGTGCGGCATTTATTGGACATAGCCCCTGAGGGCATCAGTTGG
ACGGACGAGAAGGGGGACACGCCTCTAATTCTTGCGGCCGCCGGGGGCGG
TGGAGGCGGGGTCGCGGGTAGCCGCAGCGCATTGATTCAGTTACTGCTAG
ACAAGGGTGCGAACCCCAACCAAGGGCCGGAGAAGATAGAAAGCCAACAA
CAAGGGGCGCGGGCACTGCACCACTCGGCGGCACATAATGACGTGGAGGC
CATCGAAGCGTTGCTCAAAGCAGGAGCTGATGTTGATGCGCCCACCGAGA
CGGGTACTGCTCTGCATTGGGCAAGTGGTGAAGGAGCTAGGGAAGCAGTG
CACGCGTTGGTTAAATATGGCGCGGACGTGAATGCTGTGAATGAACAGGG
CTTGGCGTCTATCATTCTAGCGGCTGCCCACGGGTGTGGTGGGTGTGTTG
CAGCGCTCGCCAAAGCAGGAGCAGATGTGGGGTTCATACTCTCGGGAGGG
GGTTTGACGGCTTTGCATATGATAGCGGAGTACGGATCTTTGGAGGGTGT
AAAGGCTATATTGGACACGGGCGCGCCGGGGTTGAAATGCGCGTTACATG
AGAGTGAGAATGGTAAGCCCGTCCATCTCGCCGCGTGGGGTGGACATCAA
GAGGTGGTTGAAGCACTCCGACCCCACTCAGATGTTAAAGAATCCGTAAG
CGAGCTTATGGAATGGGGCAAGGCCAAAGCCGCCGCCTACGAAGAAGAGC
AAAAGCTTAAAAAAGAACACGACCACCATTTGTTGGCTCAAGGTCAAGAC
TCTCACCCTGTAATCGACCTTCCCCCCGCTGCTGCATCACCCGCCGACGA
GCAAGAAGCACAGAAGCTCAAGGAGGTGGCAAATCGGCACTTTGTGGGGG
GGGAGTTGGAGACGGCGCTGGGGCTATATGATCAGGCCATTGCCTTAAAT
GGGCGAGAGGCGGCGTTTTGGAGTAACCGGGCAGGTTGCCTGTTGAAGCT
AGAGAGGTTCGAAGAGGCTCTACGGGACGCGGAGATGGCGAGGACATTGA
AGCCGGGTTGGGCGAAAGCCTGTTTTAGGATGGCAGAGGCGAGGTTGGCG
TTGGGGAGGTGGGAGGATGCTGCCTTGGCAGCTTATGAGGGAGTTCAGAT
GGACTCAGGGAATCAGGCATTGCACAAGCTGCTAAGGACAGCGATTGAGA
AGGGAAGGGCGGAACATGCGAAGAGGAAGGGGGAGGAGAAGGGGAGAAGT
AAATGAGCAGGGAAGCTGAGGAGGTGGAAACTTTAGTTTTGGCAAAAAAG
ACGCTTAGAGCGCATCGGAA

protein sequence of jgi.p|Nanoce1779_2|575308

>mRNA_1098-protein ID=mRNA_1098-protein|Name=jgi.p|Nanoce1779_2|575308|organism=Nannochloropsis oceanica|type=polypeptide|length=510bp
MTASTVTTASHNDDDNAQDKVNQGQAALQARVILTELIEAAASNDTAKLD
VLLQQERARHPDLKDDPAIFLRQYKDANGRTALHFACHAGQVEMVRHLLD
IAPEGISWTDEKGDTPLILAAAGGGGGGVAGSRSALIQLLLDKGANPNQG
PEKIESQQQGARALHHSAAHNDVEAIEALLKAGADVDAPTETGTALHWAS
GEGAREAVHALVKYGADVNAVNEQGLASIILAAAHGCGGCVAALAKAGAD
VGFILSGGGLTALHMIAEYGSLEGVKAILDTGAPGLKCALHESENGKPVH
LAAWGGHQEVVEALRPHSDVKESVSELMEWGKAKAAAYEEEQKLKKEHDH
HLLAQGQDSHPVIDLPPAAASPADEQEAQKLKEVANRHFVGGELETALGL
YDQAIALNGREAAFWSNRAGCLLKLERFEEALRDAEMARTLKPGWAKACF
RMAEARLALGRWEDAALAAYEGVQMDSGNQALHKLLRTAIEKGRAEHAKR
KGEEKGRSK*

mRNA from alignment at scaffold_2:1221399..1223098+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1098 ID=mRNA_1098|Name=jgi.p|Nanoce1779_2|575308|organism=Nannochloropsis oceanica|type=mRNA|length=1700bp|location=Sequence derived from alignment at scaffold_2:1221399..1223098+ (Nannochloropsis oceanica)
ACAGCTTCGCCCAGGTAACGACCACCATGACGGCCAGGTAAGCCATGCAC
AATTAACCTCCCCTACCTCTTTTCGCAATGCTCCCTCTCACCCACTCCTA
CACCCCTTCATGCCCAGCACCGTCACCACTGCGAGTCACAACGACGATGA
CAACGCCCAAGACAAGGTCAACCAAGGCCAGGCGGCCCTGCAAGCCCGGG
TGATCTTGACGGAACTCATCGAAGCCGCGGCTAGTAATGACACGGCCAAA
CTCGATGTCTTGCTTCAGCAAGAAAGGGCCCGGCATCCCGACTTAAAAGA
CGACCCTGCTATCTTTCTACGTCAATATAAAGACGCTAATGGTCGTACAG
CTTTGCATTTCGCCTGCCACGCGGGGCAGGTGGAGATGGTGCGGCATTTA
TTGGACATAGCCCCTGAGGGCATCAGTTGGACGGACGAGAAGGGGGACAC
GCCTCTAATTCTTGCGGCCGCCGGGGGCGGTGGAGGCGGGGTCGCGGGTA
GCCGCAGCGCATTGATTCAGTTACTGCTAGACAAGGGTGCGAACCCCAAC
CAAGGGCCGGAGAAGATAGAAAGCCAACAACAAGGGGCGCGGGCACTGCA
CCACTCGGCGGCACATAATGACGTGGAGGCCATCGAAGCGTTGCTCAAAG
CAGGAGCTGATGTTGATGCGCCCACCGAGACGGGTACTGCTCTGCATTGG
GCAAGTGGTGAAGGAGCTAGGGAAGCAGTGCACGCGTTGGTTAAATATGG
CGCGGACGTGAATGCTGTGAATGAACAGGGCTTGGCGTCTATCATTCTAG
CGGCTGCCCACGGGTGTGGTGGGTGTGTTGCAGCGCTCGCCAAAGCAGGA
GCAGATGTGGGGTTCATACTCTCGGGAGGGGGTTTGACGGCTTTGCATAT
GATAGCGGAGTACGGATCTTTGGAGGGTGTAAAGGCTATATTGGACACGG
GCGCGCCGGGGTTGAAATGCGCGTTACATGAGAGTGAGAATGGTAAGCCC
GTCCATCTCGCCGCGTGGGGTGGACATCAAGAGGTGGTTGAAGCACTCCG
ACCCCACTCAGATGTTAAAGAATCCGTAAGCGAGCTTATGGAATGGGGCA
AGGCCAAAGCCGCCGCCTACGAAGAAGAGCAAAAGCTTAAAAAAGAACAC
GACCACCATTTGTTGGCTCAAGGTCAAGACTCTCACCCTGTAATCGACCT
TCCCCCCGCTGCTGCATCACCCGCCGACGAGCAAGAAGCACAGAAGCTCA
AGGAGGTGGCAAATCGGCACTTTGTGGGGGGGGAGTTGGAGACGGCGCTG
GGGCTATATGATCAGGCCATTGCCTTAAATGGGCGAGAGGCGGCGTTTTG
GAGTAACCGGGCAGGTTGCCTGTTGAAGCTAGAGAGGTTCGAAGAGGCTC
TACGGGACGCGGAGATGGCGAGGACATTGAAGCCGGGTTGGGCGAAAGCC
TGTTTTAGGATGGCAGAGGCGAGGTTGGCGTTGGGGAGGTGGGAGGATGC
TGCCTTGGCAGCTTATGAGGGAGTTCAGATGGACTCAGGGAATCAGGCAT
TGCACAAGCTGCTAAGGACAGCGATTGAGAAGGGAAGGGCGGAACATGCG
AAGAGGAAGGGGGAGGAGAAGGGGAGAAGTAAATGAGCAGGGAAGCTGAG
GAGGTGGAAACTTTAGTTTTGGCAAAAAAGACGCTTAGAGCGCATCGGAA

Coding sequence (CDS) from alignment at scaffold_2:1221399..1223098+

>mRNA_1098 ID=mRNA_1098|Name=jgi.p|Nanoce1779_2|575308|organism=Nannochloropsis oceanica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_2:1221399..1223098+ (Nannochloropsis oceanica)
ATGACGGCCAGCACCGTCACCACTGCGAGTCACAACGACGATGACAACGC
CCAAGACAAGGTCAACCAAGGCCAGGCGGCCCTGCAAGCCCGGGTGATCT
TGACGGAACTCATCGAAGCCGCGGCTAGTAATGACACGGCCAAACTCGAT
GTCTTGCTTCAGCAAGAAAGGGCCCGGCATCCCGACTTAAAAGACGACCC
TGCTATCTTTCTACGTCAATATAAAGACGCTAATGGTCGTACAGCTTTGC
ATTTCGCCTGCCACGCGGGGCAGGTGGAGATGGTGCGGCATTTATTGGAC
ATAGCCCCTGAGGGCATCAGTTGGACGGACGAGAAGGGGGACACGCCTCT
AATTCTTGCGGCCGCCGGGGGCGGTGGAGGCGGGGTCGCGGGTAGCCGCA
GCGCATTGATTCAGTTACTGCTAGACAAGGGTGCGAACCCCAACCAAGGG
CCGGAGAAGATAGAAAGCCAACAACAAGGGGCGCGGGCACTGCACCACTC
GGCGGCACATAATGACGTGGAGGCCATCGAAGCGTTGCTCAAAGCAGGAG
CTGATGTTGATGCGCCCACCGAGACGGGTACTGCTCTGCATTGGGCAAGT
GGTGAAGGAGCTAGGGAAGCAGTGCACGCGTTGGTTAAATATGGCGCGGA
CGTGAATGCTGTGAATGAACAGGGCTTGGCGTCTATCATTCTAGCGGCTG
CCCACGGGTGTGGTGGGTGTGTTGCAGCGCTCGCCAAAGCAGGAGCAGAT
GTGGGGTTCATACTCTCGGGAGGGGGTTTGACGGCTTTGCATATGATAGC
GGAGTACGGATCTTTGGAGGGTGTAAAGGCTATATTGGACACGGGCGCGC
CGGGGTTGAAATGCGCGTTACATGAGAGTGAGAATGGTAAGCCCGTCCAT
CTCGCCGCGTGGGGTGGACATCAAGAGGTGGTTGAAGCACTCCGACCCCA
CTCAGATGTTAAAGAATCCGTAAGCGAGCTTATGGAATGGGGCAAGGCCA
AAGCCGCCGCCTACGAAGAAGAGCAAAAGCTTAAAAAAGAACACGACCAC
CATTTGTTGGCTCAAGGTCAAGACTCTCACCCTGTAATCGACCTTCCCCC
CGCTGCTGCATCACCCGCCGACGAGCAAGAAGCACAGAAGCTCAAGGAGG
TGGCAAATCGGCACTTTGTGGGGGGGGAGTTGGAGACGGCGCTGGGGCTA
TATGATCAGGCCATTGCCTTAAATGGGCGAGAGGCGGCGTTTTGGAGTAA
CCGGGCAGGTTGCCTGTTGAAGCTAGAGAGGTTCGAAGAGGCTCTACGGG
ACGCGGAGATGGCGAGGACATTGAAGCCGGGTTGGGCGAAAGCCTGTTTT
AGGATGGCAGAGGCGAGGTTGGCGTTGGGGAGGTGGGAGGATGCTGCCTT
GGCAGCTTATGAGGGAGTTCAGATGGACTCAGGGAATCAGGCATTGCACA
AGCTGCTAAGGACAGCGATTGAGAAGGGAAGGGCGGAACATGCGAAGAGG
AAGGGGGAGGAGAAGGGGAGAAGTAAATGAATGACGGCCAGCACCGTCAC
CACTGCGAGTCACAACGACGATGACAACGCCCAAGACAAGGTCAACCAAG
GCCAGGCGGCCCTGCAAGCCCGGGTGATCTTGACGGAACTCATCGAAGCC
GCGGCTAGTAATGACACGGCCAAACTCGATGTCTTGCTTCAGCAAGAAAG
GGCCCGGCATCCCGACTTAAAAGACGACCCTGCTATCTTTCTACGTCAAT
ATAAAGACGCTAATGGTCGTACAGCTTTGCATTTCGCCTGCCACGCGGGG
CAGGTGGAGATGGTGCGGCATTTATTGGACATAGCCCCTGAGGGCATCAG
TTGGACGGACGAGAAGGGGGACACGCCTCTAATTCTTGCGGCCGCCGGGG
GCGGTGGAGGCGGGGTCGCGGGTAGCCGCAGCGCATTGATTCAGTTACTG
CTAGACAAGGGTGCGAACCCCAACCAAGGGCCGGAGAAGATAGAAAGCCA
ACAACAAGGGGCGCGGGCACTGCACCACTCGGCGGCACATAATGACGTGG
AGGCCATCGAAGCGTTGCTCAAAGCAGGAGCTGATGTTGATGCGCCCACC
GAGACGGGTACTGCTCTGCATTGGGCAAGTGGTGAAGGAGCTAGGGAAGC
AGTGCACGCGTTGGTTAAATATGGCGCGGACGTGAATGCTGTGAATGAAC
AGGGCTTGGCGTCTATCATTCTAGCGGCTGCCCACGGGTGTGGTGGGTGT
GTTGCAGCGCTCGCCAAAGCAGGAGCAGATGTGGGGTTCATACTCTCGGG
AGGGGGTTTGACGGCTTTGCATATGATAGCGGAGTACGGATCTTTGGAGG
GTGTAAAGGCTATATTGGACACGGGCGCGCCGGGGTTGAAATGCGCGTTA
CATGAGAGTGAGAATGGTAAGCCCGTCCATCTCGCCGCGTGGGGTGGACA
TCAAGAGGTGGTTGAAGCACTCCGACCCCACTCAGATGTTAAAGAATCCG
TAAGCGAGCTTATGGAATGGGGCAAGGCCAAAGCCGCCGCCTACGAAGAA
GAGCAAAAGCTTAAAAAAGAACACGACCACCATTTGTTGGCTCAAGGTCA
AGACTCTCACCCTGTAATCGACCTTCCCCCCGCTGCTGCATCACCCGCCG
ACGAGCAAGAAGCACAGAAGCTCAAGGAGGTGGCAAATCGGCACTTTGTG
GGGGGGGAGTTGGAGACGGCGCTGGGGCTATATGATCAGGCCATTGCCTT
AAATGGGCGAGAGGCGGCGTTTTGGAGTAACCGGGCAGGTTGCCTGTTGA
AGCTAGAGAGGTTCGAAGAGGCTCTACGGGACGCGGAGATGGCGAGGACA
TTGAAGCCGGGTTGGGCGAAAGCCTGTTTTAGGATGGCAGAGGCGAGGTT
GGCGTTGGGGAGGTGGGAGGATGCTGCCTTGGCAGCTTATGAGGGAGTTC
AGATGGACTCAGGGAATCAGGCATTGCACAAGCTGCTAAGGACAGCGATT
GAGAAGGGAAGGGCGGAACATGCGAAGAGGAAGGGGGAGGAGAAGGGGAG
AAGTAAATGA

Synonyms

Publications