jgi.p|Nanoce1779_2|575303, mRNA_1097 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575303
Unique NamemRNA_1097
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length652
Alignment locationscaffold_2:1220198..1221121 -

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Properties
Property NameValue
TranscriptId575389
TrackFilteredModels2
ProteinId575303
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1220198..1221121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575303gene_1097Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575303mRNA_1097-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1097CDS_1097Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1097 ID=mRNA_1097|Name=jgi.p|Nanoce1779_2|575303|organism=Nannochloropsis oceanica|type=mRNA|length=652bp
AAACCACAGGTCTCGCTGCGTCCCCCTCCTCCACCACACACAAGCACCAT
GGCGGGCGCAGCACGGCGGTCGCCCCTTCCTCTCCTGGCTCTGATCATTG
TCTTCCTGGCCCTGGCGGCGCAAGCTTTTGTGGTGCCTAAGACTTCTTTG
AAAGTCACGGCAAGCAGCAGAAGATCAGGCCGCTTTGCCGTCTCCCAGCC
TCTACGTGCCCTTGACTCCGAGTGGCTAAGCACTGTGGCCTCCCCCATCC
CCTCATCCACGCTGGTCGCCGATTATTTCTCCACCGTGGATGAAATCGCT
GCGGGTATCGGTAACACGCCTTGGTTGCAGTTTTTCATTCCTACGGCGGT
TGGTATGTCAATTGCGTTGGCCATTGTGTTCTCGCTTTATATCACTGCGC
AGCCCTATGAGCCACCCAGTAAGTAAGGATGGGGATGAGGACAGAACGGG
GGAAAGGAAGCATGAGAGCAGGGATGTTGTGTGAGAGAAAAGGGGACGGA
CGAGGTGGGGAATGGGTGAGAGTAGACTAGAAAGATGGTGCGCTAGGGCA
TTTTGAGCAGTAGTGTATGAGTGTGGTGGTGATGAGGTGGTTAGAAAAAC
AACGATAACCATGCAAGAAAAAGAAAGGAAAAGTGCGAATATCTGATTGA
AG
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protein sequence of jgi.p|Nanoce1779_2|575303

>mRNA_1097-protein ID=mRNA_1097-protein|Name=jgi.p|Nanoce1779_2|575303|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MAGAARRSPLPLLALIIVFLALAAQAFVVPKTSLKVTASSRRSGRFAVSQ
PLRALDSEWLSTVASPIPSSTLVADYFSTVDEIAAGIGNTPWLQFFIPTA
VGMSIALAIVFSLYITAQPYEPPS
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mRNA from alignment at scaffold_2:1220198..1221121-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1097 ID=mRNA_1097|Name=jgi.p|Nanoce1779_2|575303|organism=Nannochloropsis oceanica|type=mRNA|length=924bp|location=Sequence derived from alignment at scaffold_2:1220198..1221121- (Nannochloropsis oceanica)
AAACCACAGGTCTCGCTGCGTCCCCCTCCTCCACCACACACAAGCACCAT
GGCGGGCGCAGCACGGCGGTCGCCCCTTCCTCTCCTGGCTCTGATCATTG
TCTTCCTGGCCCTGGCGGCGCAAGCTTTTGTGGTGCCTAAGACTTCTTTG
AAAGGTAATTTCTGTCTGTTGCTGCCGCGAAGAGATAGTTGAATGCATTG
AGCGTGTCCGGAGGGGGAGGAGCTGAAACAAGAGTGAGGGACGGGTTTTA
CATTCGAGCAGAAGCAACGGCGACCCGAAGTTTCTTGAAACCATTCGAGC
AAGCGCCTGTCGTGGCCCTCATGTTCAAAGGATATGATCCTGAGGGGTTG
GAAATGACAGAGAGAGGGCATATTCTTTCATGTATCATTTTCATCCAGAG
ACACTTTTCCCCCTCCTATAATACAGTCACGGCAAGCAGCAGAAGATCAG
GCCGCTTTGCCGTCTCCCAGCCTCTACGTGCCCTTGACTCCGAGTGGCTA
AGCACTGTGGCCTCCCCCATCCCCTCATCCACGCTGGTCGCCGATTATTT
CTCCACCGTGGATGAAATCGCTGCGGGTATCGGTAACACGCCTTGGTTGC
AGTTTTTCATTCCTACGGCGGTTGGTATGTCAATTGCGTTGGCCATTGTG
TTCTCGCTTTATATCACTGCGCAGCCCTATGAGCCACCCAGTAAGTAAGG
ATGGGGATGAGGACAGAACGGGGGAAAGGAAGCATGAGAGCAGGGATGTT
GTGTGAGAGAAAAGGGGACGGACGAGGTGGGGAATGGGTGAGAGTAGACT
AGAAAGATGGTGCGCTAGGGCATTTTGAGCAGTAGTGTATGAGTGTGGTG
GTGATGAGGTGGTTAGAAAAACAACGATAACCATGCAAGAAAAAGAAAGG
AAAAGTGCGAATATCTGATTGAAG
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Coding sequence (CDS) from alignment at scaffold_2:1220198..1221121-

>mRNA_1097 ID=mRNA_1097|Name=jgi.p|Nanoce1779_2|575303|organism=Nannochloropsis oceanica|type=CDS|length=748bp|location=Sequence derived from alignment at scaffold_2:1220198..1221121- (Nannochloropsis oceanica)
TCACGGCAAGCAGCAGAAGATCAGGCCGCTTTGCCGTCTCCCAGCCTCTA
CGTGCCCTTGACTCCGAGTGGCTAAGCACTGTGGCCTCCCCCATCCCCTC
ATCCACGCTGGTCGCCGATTATTTCTCCACCGTGGATGAAATCGCTGCGG
GTATCGGTAACACGCCTTGGTTGCAGTTTTTCATTCCTACGGCGGTTGGT
ATGTCAATTGCGTTGGCCATTGTGTTCTCGCTTTATATCACTGCGCAGCC
CTATGAGCCACCCAGTAAATGGCGGGCGCAGCACGGCGGTCGCCCCTTCC
TCTCCTGGCTCTGATCATTGTCTTCCTGGCCCTGGCGGCGCAAGCTTTTG
TGGTGCCTAAGACTTCTTTGAAAGTCACGGCAAGCAGCAGAAGATCAGGC
CGCTTTGCCGTCTCCCAGCCTCTACGTGCCCTTGACTCCGAGTGGCTAAG
CACTGTGGCCTCCCCCATCCCCTCATCCACGCTGGTCGCCGATTATTTCT
CCACCGTGGATGAAATCGCTGCGGGTATCGGTAACACGCCTTGGTTGCAG
TTTTTCATTCCTACGGCGGTTGGTATGTCAATTGCGTTGGCCATTGTGTT
CTCGCTTTATATCACTGCGCAGCCCTATGAGCCACCCAGTAAATGGCGGG
CGCAGCACGGCGGTCGCCCCTTCCTCTCCTGGCTCTGATCATTGTCTTCC
TGGCCCTGGCGGCGCAAGCTTTTGTGGTGCCTAAGACTTCTTTGAAAG
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Synonyms
Publications