jgi.p|Nanoce1779_2|386351, mRNA_10942 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|386351
Unique NamemRNA_10942
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length900
Alignment locationscaffold_68:76512..77411 +

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Properties
Property NameValue
TranscriptId386437
TrackFilteredModels2
ProteinId386351
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_68supercontigscaffold_68:76512..77411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|386351gene_10942Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|386351mRNA_10942-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10942CDS_10942Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10942 ID=mRNA_10942|Name=jgi.p|Nanoce1779_2|386351|organism=Nannochloropsis oceanica|type=mRNA|length=900bp
TGGAGCCGGTGGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCGACAAAA
ATGGCGGCGACTGGGTAGTGAAGATTGGTAGTGGCCCTGTTGCAGCTCAT
GCCTTGCGAAACGAGGCCTTGCTCCTTCGGCGACTGGCGACAAGGGGGGT
TAGGGAGGGGGGTAGAGGAGGTGGTCGGGCTAGTCTCGTGCGATGGCGGG
GAGTGGACAAACGACGACCCAGACACGAGCAATAGCAGCAGCAGTAGTAG
CAGCAGCAGGAAGGCGAAAAAGAAAGGGACGGAAGAGAAGGTGGTTCTGG
CGATGAGGCCCTACTGGTCTGAGGCCGAACAGGTGGACCGAGTCGATGGC
GCCGCTCAAGTCCGGGCTTTGATCCGGTTGCTTTTGGGGCGGGTGGCGGC
TCAGGGCGGGGTTGTCTTGACCGACGTACAGGTGCTGGCGTCAACTTCGA
AGGATATGAAGTCCGATTTTCTTTTGATTGACCTCACGGAAGGGCAGGCC
TTGGACGAGGGCGCAGACGTGGCTACTCCGACTGGTGTGGCGGCACTGCG
CGCTTATGTGGGGGAAGTGGCTACCTTGATCGTGCCAAGCGTCGAGAATC
ACTCGGCAGCGCTTCAGGAAGTGGAGGATATGGGCGCTCCGGCGTTGTTG
GAATTGGTGAAAAGCTTGTTTCCTTTGGCGAGAGGCGAGGGGGAATGAGA
TACTGTGGACGGGGAATGGTAAGTCTGAAGCCAGCATCCACTCCGCGGCC
TTCTCTTCTTTTCTACACTCCACGATCTCAAAAAGGTGCCCCATTCACCT
CTGTGCAATCCATTCTCTTTGGCCGATTACTTAACTCATAGGATTTATTC
AGGGTTTATTGTGAGGAGTGCGAGCAAATCAACAGAACTAACGAATTTTG
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protein sequence of jgi.p|Nanoce1779_2|386351

>mRNA_10942-protein ID=mRNA_10942-protein|Name=jgi.p|Nanoce1779_2|386351|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MPCETRPCSFGDWRQGGLGRGVEEVVGLVSCDGGEWTNDDPDTSNSSSSS
SSSRKAKKKGTEEKVVLAMRPYWSEAEQVDRVDGAAQVRALIRLLLGRVA
AQGGVVLTDVQVLASTSKDMKSDFLLIDLTEGQALDEGADVATPTGVAAL
RAYVGEVATLIVPSVENHSAALQEVEDMGAPALLELVKSLFPLARGEGE*
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mRNA from alignment at scaffold_68:76512..77411+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10942 ID=mRNA_10942|Name=jgi.p|Nanoce1779_2|386351|organism=Nannochloropsis oceanica|type=mRNA|length=900bp|location=Sequence derived from alignment at scaffold_68:76512..77411+ (Nannochloropsis oceanica)
TGGAGCCGGTGGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCGACAAAA
ATGGCGGCGACTGGGTAGTGAAGATTGGTAGTGGCCCTGTTGCAGCTCAT
GCCTTGCGAAACGAGGCCTTGCTCCTTCGGCGACTGGCGACAAGGGGGGT
TAGGGAGGGGGGTAGAGGAGGTGGTCGGGCTAGTCTCGTGCGATGGCGGG
GAGTGGACAAACGACGACCCAGACACGAGCAATAGCAGCAGCAGTAGTAG
CAGCAGCAGGAAGGCGAAAAAGAAAGGGACGGAAGAGAAGGTGGTTCTGG
CGATGAGGCCCTACTGGTCTGAGGCCGAACAGGTGGACCGAGTCGATGGC
GCCGCTCAAGTCCGGGCTTTGATCCGGTTGCTTTTGGGGCGGGTGGCGGC
TCAGGGCGGGGTTGTCTTGACCGACGTACAGGTGCTGGCGTCAACTTCGA
AGGATATGAAGTCCGATTTTCTTTTGATTGACCTCACGGAAGGGCAGGCC
TTGGACGAGGGCGCAGACGTGGCTACTCCGACTGGTGTGGCGGCACTGCG
CGCTTATGTGGGGGAAGTGGCTACCTTGATCGTGCCAAGCGTCGAGAATC
ACTCGGCAGCGCTTCAGGAAGTGGAGGATATGGGCGCTCCGGCGTTGTTG
GAATTGGTGAAAAGCTTGTTTCCTTTGGCGAGAGGCGAGGGGGAATGAGA
TACTGTGGACGGGGAATGGTAAGTCTGAAGCCAGCATCCACTCCGCGGCC
TTCTCTTCTTTTCTACACTCCACGATCTCAAAAAGGTGCCCCATTCACCT
CTGTGCAATCCATTCTCTTTGGCCGATTACTTAACTCATAGGATTTATTC
AGGGTTTATTGTGAGGAGTGCGAGCAAATCAACAGAACTAACGAATTTTG
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Coding sequence (CDS) from alignment at scaffold_68:76512..77411+

>mRNA_10942 ID=mRNA_10942|Name=jgi.p|Nanoce1779_2|386351|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_68:76512..77411+ (Nannochloropsis oceanica)
ATGCCTTGCGAAACGAGGCCTTGCTCCTTCGGCGACTGGCGACAAGGGGG
GTTAGGGAGGGGGGTAGAGGAGGTGGTCGGGCTAGTCTCGTGCGATGGCG
GGGAGTGGACAAACGACGACCCAGACACGAGCAATAGCAGCAGCAGTAGT
AGCAGCAGCAGGAAGGCGAAAAAGAAAGGGACGGAAGAGAAGGTGGTTCT
GGCGATGAGGCCCTACTGGTCTGAGGCCGAACAGGTGGACCGAGTCGATG
GCGCCGCTCAAGTCCGGGCTTTGATCCGGTTGCTTTTGGGGCGGGTGGCG
GCTCAGGGCGGGGTTGTCTTGACCGACGTACAGGTGCTGGCGTCAACTTC
GAAGGATATGAAGTCCGATTTTCTTTTGATTGACCTCACGGAAGGGCAGG
CCTTGGACGAGGGCGCAGACGTGGCTACTCCGACTGGTGTGGCGGCACTG
CGCGCTTATGTGGGGGAAGTGGCTACCTTGATCGTGCCAAGCGTCGAGAA
TCACTCGGCAGCGCTTCAGGAAGTGGAGGATATGGGCGCTCCGGCGTTGT
TGGAATTGGTGAAAAGCTTGTTTCCTTTGGCGAGAGGCGAGGGGGAATGA
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Synonyms
Publications