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Properties
| Property Name | Value |
|---|
| TranscriptId | 575378 |
| Track | FilteredModels2 |
| ProteinId | 575292 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1204626..1207100 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1094 ID=mRNA_1094|Name=jgi.p|Nanoce1779_2|575292|organism=Nannochloropsis oceanica|type=mRNA|length=2106bp
AGGCATCCCCGTCTGGAGTTCGACGTCGTTGGACCATTCCGAATGTCGTT
CCTCAGTAATTCCCCGCGTGGAAAGAAAGCCCTTGAAGGCAAAGCGGACG
CCTTTGGAGGCAGTGTTTGCGACTCCCAAAGCTACAAAATGGATCTCCTC
ATCACGCAACTCAGGGAGTCTGTCCGCGACAAAGATGCCATCATCAGCTC
CATGCAAGCAGAAGCTGAGTCTTTGCGTGCCTCCCTCGCACAAATGCGCG
CCCAAGAAGCTTCAAGGTCCCCCCGCAACCGCAAAGTCGTCCCTCTTTCC
TATGAAGTCGAAGCAGACGGCGTCCTTTCTCGCACACGCGTCGGGCGCCA
CGCTTCCGTTGCGACTACACAAATCTTAAATACCTTCCCGGTGGAGAGCA
CGGACGAGCTGGCTAGCAAGATGATCGACATGTTCCGCAAACCCCTGGAC
AAGATCGATTACCTCCACTCCTCCCGCTTCGCTCACGATTTGATGAAGCT
CTGTGCACGGGCAAAGCCTATTTTTGAGGCCGAGCCCCGGTGCTTGGCGT
TGGAGAGTCCTACCTATGTGATTGGTGATATTCACGGGAATTTGGAAGAC
TTGAACTTTTTTGCGGATCATCTATGGAAGCTCGGGACGCAGCTGACGGC
CGGCAAGTTTTTGTTCTTGGGAGATTATGTAGATAGGGGGACGAACGGGT
TGGAGTGTGTGGCGTACCTATTTGCGTCGAAGATCTGCTCACCGACCAAG
CTGTTTATGCTGCGGGGAAATCACGAAACGCGGGATGTGAATGGTTGGGA
GGATCATTACGGGGATCGGTCGTTCCTGAGGCAGTGCAAGGCCCGCTTTG
GACGTGACTTGGGAGAGCAGATCTGGGAGGCGATAAATCAGGTGTTTGAT
CGGCTGCCTTTGGCGGGAGTGATTGACAATGACATCTTTTGCGTGCATGG
CGGTCTGCCGAGGCCGACCAAGGAGGTTGAAGTCGCGACGCGGGTGGAGG
ACTTGCTGGCTGTGCCACGTGTAGCGGGCATTTCGCCGGTGTACGACCAT
GAGTCACGAGTGTCTCAACAATTGGCTTCCGACTGCATCTGGTCGGACCC
GGCCTTGGCGGACATGGAGCAGGGCAGGGAACTGAACGACTTGGGGTTTG
GAGAGAGCCTGAGGGGGGGAGGAGCGGTGTGTTTTGGGAATCGTGCGGTT
GATAATTTTCTGGACGTGAACCAGTTCTCGTACATCGTTCGCGCGCACGA
GGCACATGCGGAGGGAGTGGGGCTGAGTAAGGGGGCGCGGGTGTTCACGG
TATTTTCAACGAGCAAGGACCATGGGCAGGGGACGGGCGCGGTGGCTGGA
TGTATATTGGTGGACAATGATGCCATTCGCGTCATCAACCGCTCGGCTAA
GTACAAGAACAAGTTTGTGCACCGAAGACAGAGTGCAACAGCCGCGGGGG
TTGCCCCGGCTCATGTGGAGAAGGCCATCCGGTTGGGCTTGGTGTTAAAC
GTGCCCCATGAGCCCTTGGATAGGGTGGTGCCCCGGATGGGCCTGCAGCA
GCAGCAGCAGGTGACAATGACAACGGTTAGCAGCAGTGTGCGGGGGTCAC
TGGCGGATGCGGCGGCAACGTTTGCGGCTCTGGCGCTGCAGCGGGAGCAC
AGTCATTCGTTTTCGAGTGAGGAGGGAGTATTGGGGGAGGAAGGGGAAGA
TGACGATGATATGGAAAGTGGGAAGCCTTAGAAAAATGGGTAAATGTATC
TTAGTTTTCCATGCTGAGGAAATCTACTTGGACATGTAAATTAAAAAAAA
ATCATTAGAGAGTGGGCAATAGCAGAGCAGAGTCATGGCACACGTCCATA
AACAGACACACACATACAGACACAAATACACTCACTTACACCCTCCCTCT
CTCACGAGCTTTCTAGAGATGTAGGACTTAGCAAATCATAGAAGGGGGAA
ACATGTCATGATAGGTAAGATTAGTTTGGAGTGACGCTATTGACAACTGG
TGCATGTGTCCTGAGTCTAGCACACGGTAGGAAGTAGTGCAGCAGTGGGA
AAGCCGAACCCGCGAACCAACAATCAAATTATAAAGAATGTGATGTATAC
TGACTG back to topprotein sequence of jgi.p|Nanoce1779_2|575292 >mRNA_1094-protein ID=mRNA_1094-protein|Name=jgi.p|Nanoce1779_2|575292|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MSFLSNSPRGKKALEGKADAFGGSVCDSQSYKMDLLITQLRESVRDKDAI
ISSMQAEAESLRASLAQMRAQEASRSPRNRKVVPLSYEVEADGVLSRTRV
GRHASVATTQILNTFPVESTDELASKMIDMFRKPLDKIDYLHSSRFAHDL
MKLCARAKPIFEAEPRCLALESPTYVIGDIHGNLEDLNFFADHLWKLGTQ
LTAGKFLFLGDYVDRGTNGLECVAYLFASKICSPTKLFMLRGNHETRDVN
GWEDHYGDRSFLRQCKARFGRDLGEQIWEAINQVFDRLPLAGVIDNDIFC
VHGGLPRPTKEVEVATRVEDLLAVPRVAGISPVYDHESRVSQQLASDCIW
SDPALADMEQGRELNDLGFGESLRGGGAVCFGNRAVDNFLDVNQFSYIVR
AHEAHAEGVGLSKGARVFTVFSTSKDHGQGTGAVAGCILVDNDAIRVINR
SAKYKNKFVHRRQSATAAGVAPAHVEKAIRLGLVLNVPHEPLDRVVPRMG
LQQQQQVTMTTVSSSVRGSLADAAATFAALALQREHSHSFSSEEGVLGEE
GEDDDDMESGKP* back to topmRNA from alignment at scaffold_2:1204626..1207100- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1094 ID=mRNA_1094|Name=jgi.p|Nanoce1779_2|575292|organism=Nannochloropsis oceanica|type=mRNA|length=2475bp|location=Sequence derived from alignment at scaffold_2:1204626..1207100- (Nannochloropsis oceanica)
AGGCATCCCCGTCTGGAGTTCGACGTCGTTGGACCATTCCGAATGTCGTT
CCTCAGTAATTCCCCGCGTGGAAAGAAAGCCCTTGAAGGCAAAGCGGACG
CCTTTGGAGGCAGTGTTTGCGACTCCCAAAGGTAATTAGAAAGTGAAGAT
GAACAACACCTGGATGTGATTAGGGTGTATGTCCTTAGATGTCTGCCTCT
ACCATGCATGCGCGTGTACCTAGGCTGGCAAGTCATTCCCTCCACATGAT
GTTTTGAATGGCCGAGCCAAACGGCAAATGACCGCGCTAACAATCTTAGT
ATGTGGCTTCTGCTGTTAAGCCCTTAGGTGGAATGCCACACTCTCCTCAT
TCTCTGCCCAAGCTTCTCTGCCTCGCCACACTCTCCTCATTCTCTGCCCA
AGCTTCTCTGCCTCCTCTCCTCTCGCTTTGCATCCCTCCTACATCTCATG
AAACACCTTTACCCTGTCTCATTACACTTCCATTTCCACTCTTACCATAG
CTACAAAATGGATCTCCTCATCACGCAACTCAGGGAGTCTGTCCGCGACA
AAGATGCCATCATCAGCTCCATGCAAGCAGAAGCTGAGTCTTTGCGTGCC
TCCCTCGCACAAATGCGCGCCCAAGAAGCTTCAAGGTCCCCCCGCAACCG
CAAAGTCGTCCCTCTTTCCTATGAAGTCGAAGCAGACGGCGTCCTTTCTC
GCACACGCGTCGGGCGCCACGCTTCCGTTGCGACTACACAAATCTTAAAT
ACCTTCCCGGTGGAGAGCACGGACGAGCTGGCTAGCAAGATGATCGACAT
GTTCCGCAAACCCCTGGACAAGATCGATTACCTCCACTCCTCCCGCTTCG
CTCACGATTTGATGAAGCTCTGTGCACGGGCAAAGCCTATTTTTGAGGCC
GAGCCCCGGTGCTTGGCGTTGGAGAGTCCTACCTATGTGATTGGTGATAT
TCACGGGAATTTGGAAGACTTGAACTTTTTTGCGGATCATCTATGGAAGC
TCGGGACGCAGCTGACGGCCGGCAAGTTTTTGTTCTTGGGAGATTATGTA
GATAGGGGGACGAACGGGTTGGAGTGTGTGGCGTACCTATTTGCGTCGAA
GATCTGCTCACCGACCAAGCTGTTTATGCTGCGGGGAAATCACGAAACGC
GGGATGTGAATGGTTGGGAGGATCATTACGGGGATCGGTCGTTCCTGAGG
CAGTGCAAGGCCCGCTTTGGACGTGACTTGGGAGAGCAGATCTGGGAGGC
GATAAATCAGGTGTTTGATCGGCTGCCTTTGGCGGGAGTGATTGACAATG
ACATCTTTTGCGTGCATGGCGGTCTGCCGAGGCCGACCAAGGAGGTTGAA
GTCGCGACGCGGGTGGAGGACTTGCTGGCTGTGCCACGTGTAGCGGGCAT
TTCGCCGGTGTACGACCATGAGTCACGAGTGTCTCAACAATTGGCTTCCG
ACTGCATCTGGTCGGACCCGGCCTTGGCGGACATGGAGCAGGGCAGGGAA
CTGAACGACTTGGGGTTTGGAGAGAGCCTGAGGGGGGGAGGAGCGGTGTG
TTTTGGGAATCGTGCGGTTGATAATTTTCTGGACGTGAACCAGTTCTCGT
ACATCGTTCGCGCGCACGAGGCACATGCGGAGGGAGTGGGGCTGAGTAAG
GGGGCGCGGGTGTTCACGGTATTTTCAACGAGCAAGGACCATGGGCAGGG
GACGGGCGCGGTGGCTGGATGTATATTGGTGGACAATGATGCCATTCGCG
TCATCAACCGCTCGGCTAAGTACAAGAACAAGTTTGTGCACCGAAGACAG
AGTGCAACAGCCGCGGGGGTTGCCCCGGCTCATGTGGAGAAGGCCATCCG
GTTGGGCTTGGTGTTAAACGTGCCCCATGAGCCCTTGGATAGGGTGGTGC
CCCGGATGGGCCTGCAGCAGCAGCAGCAGGTGACAATGACAACGGTTAGC
AGCAGTGTGCGGGGGTCACTGGCGGATGCGGCGGCAACGTTTGCGGCTCT
GGCGCTGCAGCGGGAGCACAGTCATTCGTTTTCGAGTGAGGAGGGAGTAT
TGGGGGAGGAAGGGGAAGATGACGATGATATGGAAAGTGGGAAGCCTTAG
AAAAATGGGTAAATGTATCTTAGTTTTCCATGCTGAGGAAATCTACTTGG
ACATGTAAATTAAAAAAAAATCATTAGAGAGTGGGCAATAGCAGAGCAGA
GTCATGGCACACGTCCATAAACAGACACACACATACAGACACAAATACAC
TCACTTACACCCTCCCTCTCTCACGAGCTTTCTAGAGATGTAGGACTTAG
CAAATCATAGAAGGGGGAAACATGTCATGATAGGTAAGATTAGTTTGGAG
TGACGCTATTGACAACTGGTGCATGTGTCCTGAGTCTAGCACACGGTAGG
AAGTAGTGCAGCAGTGGGAAAGCCGAACCCGCGAACCAACAATCAAATTA
TAAAGAATGTGATGTATACTGACTG back to topCoding sequence (CDS) from alignment at scaffold_2:1204626..1207100- >mRNA_1094 ID=mRNA_1094|Name=jgi.p|Nanoce1779_2|575292|organism=Nannochloropsis oceanica|type=CDS|length=3378bp|location=Sequence derived from alignment at scaffold_2:1204626..1207100- (Nannochloropsis oceanica)
CTACAAAATGGATCTCCTCATCACGCAACTCAGGGAGTCTGTCCGCGACA
AAGATGCCATCATCAGCTCCATGCAAGCAGAAGCTGAGTCTTTGCGTGCC
TCCCTCGCACAAATGCGCGCCCAAGAAGCTTCAAGGTCCCCCCGCAACCG
CAAAGTCGTCCCTCTTTCCTATGAAGTCGAAGCAGACGGCGTCCTTTCTC
GCACACGCGTCGGGCGCCACGCTTCCGTTGCGACTACACAAATCTTAAAT
ACCTTCCCGGTGGAGAGCACGGACGAGCTGGCTAGCAAGATGATCGACAT
GTTCCGCAAACCCCTGGACAAGATCGATTACCTCCACTCCTCCCGCTTCG
CTCACGATTTGATGAAGCTCTGTGCACGGGCAAAGCCTATTTTTGAGGCC
GAGCCCCGGTGCTTGGCGTTGGAGAGTCCTACCTATGTGATTGGTGATAT
TCACGGGAATTTGGAAGACTTGAACTTTTTTGCGGATCATCTATGGAAGC
TCGGGACGCAGCTGACGGCCGGCAAGTTTTTGTTCTTGGGAGATTATGTA
GATAGGGGGACGAACGGGTTGGAGTGTGTGGCGTACCTATTTGCGTCGAA
GATCTGCTCACCGACCAAGCTGTTTATGCTGCGGGGAAATCACGAAACGC
GGGATGTGAATGGTTGGGAGGATCATTACGGGGATCGGTCGTTCCTGAGG
CAGTGCAAGGCCCGCTTTGGACGTGACTTGGGAGAGCAGATCTGGGAGGC
GATAAATCAGGTGTTTGATCGGCTGCCTTTGGCGGGAGTGATTGACAATG
ACATCTTTTGCGTGCATGGCGGTCTGCCGAGGCCGACCAAGGAGGTTGAA
GTCGCGACGCGGGTGGAGGACTTGCTGGCTGTGCCACGTGTAGCGGGCAT
TTCGCCGGTGTACGACCATGAGTCACGAGTGTCTCAACAATTGGCTTCCG
ACTGCATCTGGTCGGACCCGGCCTTGGCGGACATGGAGCAGGGCAGGGAA
CTGAACGACTTGGGGTTTGGAGAGAGCCTGAGGGGGGGAGGAGCGGTGTG
TTTTGGGAATCGTGCGGTTGATAATTTTCTGGACGTGAACCAGTTCTCGT
ACATCGTTCGCGCGCACGAGGCACATGCGGAGGGAGTGGGGCTGAGTAAG
GGGGCGCGGGTGTTCACGGTATTTTCAACGAGCAAGGACCATGGGCAGGG
GACGGGCGCGGTGGCTGGATGTATATTGGTGGACAATGATGCCATTCGCG
TCATCAACCGCTCGGCTAAGTACAAGAACAAGTTTGTGCACCGAAGACAG
AGTGCAACAGCCGCGGGGGTTGCCCCGGCTCATGTGGAGAAGGCCATCCG
GTTGGGCTTGGTGTTAAACGTGCCCCATGAGCCCTTGGATAGGGTGGTGC
CCCGGATGGGCCTGCAGCAGCAGCAGCAGGTGACAATGACAACGGTTAGC
AGCAGTGTGCGGGGGTCACTGGCGGATGCGGCGGCAACGTTTGCGGCTCT
GGCGCTGCAGCGGGAGCACAGTCATTCGTTTTCGAGTGAGGAGGGAGTAT
TGGGGGAGGAAGGGGAAGATGACGATGATATGGAAAGTGGGAAGCCTTAG
ATGTCGTTCCTCAGTAATTCCCCGCGTGGAAAGAAAGCCCTTGAAGGCAA
AGCGGACGCCTTTGGAGGCAGTGTTTGCGACTCCCAAAGCTACAAAATGG
ATCTCCTCATCACGCAACTCAGGGAGTCTGTCCGCGACAAAGATGCCATC
ATCAGCTCCATGCAAGCAGAAGCTGAGTCTTTGCGTGCCTCCCTCGCACA
AATGCGCGCCCAAGAAGCTTCAAGGTCCCCCCGCAACCGCAAAGTCGTCC
CTCTTTCCTATGAAGTCGAAGCAGACGGCGTCCTTTCTCGCACACGCGTC
GGGCGCCACGCTTCCGTTGCGACTACACAAATCTTAAATACCTTCCCGGT
GGAGAGCACGGACGAGCTGGCTAGCAAGATGATCGACATGTTCCGCAAAC
CCCTGGACAAGATCGATTACCTCCACTCCTCCCGCTTCGCTCACGATTTG
ATGAAGCTCTGTGCACGGGCAAAGCCTATTTTTGAGGCCGAGCCCCGGTG
CTTGGCGTTGGAGAGTCCTACCTATGTGATTGGTGATATTCACGGGAATT
TGGAAGACTTGAACTTTTTTGCGGATCATCTATGGAAGCTCGGGACGCAG
CTGACGGCCGGCAAGTTTTTGTTCTTGGGAGATTATGTAGATAGGGGGAC
GAACGGGTTGGAGTGTGTGGCGTACCTATTTGCGTCGAAGATCTGCTCAC
CGACCAAGCTGTTTATGCTGCGGGGAAATCACGAAACGCGGGATGTGAAT
GGTTGGGAGGATCATTACGGGGATCGGTCGTTCCTGAGGCAGTGCAAGGC
CCGCTTTGGACGTGACTTGGGAGAGCAGATCTGGGAGGCGATAAATCAGG
TGTTTGATCGGCTGCCTTTGGCGGGAGTGATTGACAATGACATCTTTTGC
GTGCATGGCGGTCTGCCGAGGCCGACCAAGGAGGTTGAAGTCGCGACGCG
GGTGGAGGACTTGCTGGCTGTGCCACGTGTAGCGGGCATTTCGCCGGTGT
ACGACCATGAGTCACGAGTGTCTCAACAATTGGCTTCCGACTGCATCTGG
TCGGACCCGGCCTTGGCGGACATGGAGCAGGGCAGGGAACTGAACGACTT
GGGGTTTGGAGAGAGCCTGAGGGGGGGAGGAGCGGTGTGTTTTGGGAATC
GTGCGGTTGATAATTTTCTGGACGTGAACCAGTTCTCGTACATCGTTCGC
GCGCACGAGGCACATGCGGAGGGAGTGGGGCTGAGTAAGGGGGCGCGGGT
GTTCACGGTATTTTCAACGAGCAAGGACCATGGGCAGGGGACGGGCGCGG
TGGCTGGATGTATATTGGTGGACAATGATGCCATTCGCGTCATCAACCGC
TCGGCTAAGTACAAGAACAAGTTTGTGCACCGAAGACAGAGTGCAACAGC
CGCGGGGGTTGCCCCGGCTCATGTGGAGAAGGCCATCCGGTTGGGCTTGG
TGTTAAACGTGCCCCATGAGCCCTTGGATAGGGTGGTGCCCCGGATGGGC
CTGCAGCAGCAGCAGCAGGTGACAATGACAACGGTTAGCAGCAGTGTGCG
GGGGTCACTGGCGGATGCGGCGGCAACGTTTGCGGCTCTGGCGCTGCAGC
GGGAGCACAGTCATTCGTTTTCGAGTGAGGAGGGAGTATTGGGGGAGGAA
GGGGAAGATGACGATGATATGGAAAGTGGGAAGCCTTAGATGTCGTTCCT
CAGTAATTCCCCGCGTGGAAAGAAAGCCCTTGAAGGCAAAGCGGACGCCT
TTGGAGGCAGTGTTTGCGACTCCCAAAG back to top
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