jgi.p|Nanoce1779_2|612876, mRNA_10938 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612876
Unique NamemRNA_10938
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1457
Alignment locationscaffold_68:67715..69276 +

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Properties
Property NameValue
TranscriptId612962
TrackFilteredModels2
ProteinId612876
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_68supercontigscaffold_68:67715..69276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612876gene_10938Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612876mRNA_10938-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10938CDS_10938Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10938 ID=mRNA_10938|Name=jgi.p|Nanoce1779_2|612876|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp
GGGGTGTTGTGTGTAGAGGAGAAGGAGGAGGAAGAGGAGGGGGTGGAGGA
GAAAGTGGAAGTGGAAATGTGCAGTGTACAGAAAGAAAAGAAAGAGAGTT
AGAGAAAGGGAGAGAAAGAGAGAAAGAGGGAGAAATGAGTGAGTGGGATA
TCGGGGGTGGAGTGGGGGATAAGTATGAGTGTGTTGTGTGGTCTGCTTGG
CGTGAGAAGGAGGTAAAAAGATAAAGCAGAGAAGACTGCGTGGTATCAAA
AGCATGGAAGAGAGTAAAGAGAGAGGGCCATAAATATTGGTGGTGATGAG
TCTGCCTCGTCTCTCGTCCAACCATGTTTGACTTGTAGGCTTCGTGTATA
ATATAAGGTAGAGAGAAGTATCCCCCTGCGTGTGGTCGTGCTGCCAAAGG
GAGGGAGAGAGGGAGACAGGTTGACAGGTAGATATCAGATTAGGAAATAG
AAAGATGATCAGCATGTATTTTGGCCCTCCCATTACCAGGGCCTAGTAAG
ATGACTATTGAACCCCCTGAGTCGAATCAGTTAATCGACCTCGATCCTTA
TAATGAACGAGAAGGTAATCAGCAGCCACCCTTCACCCATCAGTCATCGG
AAGTCTAAAAAGAAAGCAGCCATTGTCCCTGCCTGTGTTAAAAGTCACTT
TTGGTGTGTAAATGGTAGCGATAGTGAGGTGTGAGAGTGTTGAATGCGCC
AAAAAAGATGATAGGAGAGTGGATAGAACGGAAGTAGCATTGCAGTTGCA
CGGCAAAGTCGATCTTTTTCTAGCCGTTTACATACACAAACTCAAATCAC
AGCAAAACGTATATTCCTTCTCGCCTGGTAATCCTCCCCGTCGTCGCCTC
ACTTTTTTCACCTCTCTCTTTTGAAGCTTGCTCCTCCTCTCGGGGTGGGT
ATCTGGTACAGGAGAGAGAGGCAGAGGAACAGGTGCCGCCGCAGTTATCC
AGCAGCAGCGAAACTCTTGTAACATGCCTCTGCTGATACTCTCTGAGTCA
AGCAATAGCGTTAAAATGACACTCCCCAAGAAAAAACAACCTACTACCTC
GAAAACAGCATGCACTCACCTTCTCGCTGCTCTTCTTTCTTTCTTTTGTT
TCTTTGCACTATTCCCTCCTCGCTCTTTCTATATTTCTGCAAGCTCCATT
CACACCTTCCTTTCCTGATCTCGTCCAAGTCCCCCCTTTTCTCCACGTGG
TTTTCATCGGAGAGGACTTCGTCCAACTTTCGCTCTCTCTTAGATGCTTC
TTACTTGATAGCGCTTCCTCTCGTCATGGACAAGATAAAAACAACAACTT
ACCCACCTCATCCTCCTGTTCTCCCAATCTTTATTTCTCATTTCTCAGAG
AACTTCTAGCGGCGCCAAGGTTGTGGGGGCGGCTGCTGTTGCTGGTGCTG
GTGCTGCTGGTGCTGGTGCTGCTGGTGCTGGTGCTGCTGGTGCTGGTGCT
GCTGGTG
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protein sequence of jgi.p|Nanoce1779_2|612876

>mRNA_10938-protein ID=mRNA_10938-protein|Name=jgi.p|Nanoce1779_2|612876|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MHSPSRCSSFFLLFLCTIPSSLFLYFCKLHSHLPFLISSKSPLFSTWFSS
ERTSSNFRSLLDASYLIALPLVMDKIKTTTYPPHPPVLPIFISHFSENF*
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mRNA from alignment at scaffold_68:67715..69276+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10938 ID=mRNA_10938|Name=jgi.p|Nanoce1779_2|612876|organism=Nannochloropsis oceanica|type=mRNA|length=1562bp|location=Sequence derived from alignment at scaffold_68:67715..69276+ (Nannochloropsis oceanica)
GGGGTGTTGTGTGTAGAGGAGAAGGAGGAGGAAGAGGAGGGGGTGGAGGA
GAAAGTGGAAGTGGAAATGTGCAGTGTACAGAAAGAAAAGAAAGAGAGTT
AGAGAAAGGGAGAGAAAGAGAGAAAGAGGGAGAAATGAGTGAGTGGGATA
TCGGGGGTGGAGTGGGGGATAAGTATGAGTGTGTTGTGTGGTCTGCTTGG
CGTGAGAAGGAGGTAAAAAGATAAAGCAGAGAAGACTGCGTGGTATCAAA
AGCATGGAAGAGAGTAAAGAGAGAGGGCCATAAATATTGGTGGTGATGAG
TCTGCCTCGTCTCTCGTCCAACCATGTTTGACTTGTAGGCTTCGTGTATA
ATATAAGGTAGAGAGAAGTATCCCCCTGCGTGTGGTCGTGCTGCCAAAGG
GAGGGAGAGAGGGAGACAGGTTGACAGGTAGATATCAGATTAGGAAATAG
AAAGATGATCAGCATGTATTTTGGCCCTCCCATTACCAGGGCCTAGTAAG
ATGACTATTGAACCCCCTGAGTCGAATCAGTTAATCGACCTCGATCCTTA
TAATGAACGAGAAGGTAATCAGCAGCCACCCTTCACCCATCAGTCATCGG
AAGTCTAAAAAGAAAGCAGCCATTGTCCCTGCCTGTGTTAAAAGTCACTT
TTGGTGTGTAAATGGTAGCGATAGTGAGGTGTGAGAGTGTTGAATGCGCC
AAAAAAGATGATAGGAGAGTGGATAGAACGGAAGTAGCATTGCAGTTGCA
CGGCAAAGTCGATCTTTTTCTAGCCGTTTACATACACAAACTCAAATCAC
AGCAAAACGTATATTCCTTCTCGCCTGGTAATCCTCCCCGTCGTCGCCTC
ACTTTTTTCACCTCTCTCTTTTGAAGCTTGCTCCTCCTCTCGGGGTGGGT
ATCTGGTACAGGAGAGAGAGGCAGAGGAACAGGTGCCGCCGCAGTTATCC
AGCAGCAGCGAAACTCTTGTAACATGCCTCTGCTGATACTCTCTGAGTCA
AGCAATAGCGTTAAAATGACACTCCCCAAGAAAAAACAACCTACTACCTC
GAAAACAGCATGCACTCACCTTCTCGCTGCTCTTCTTTCTTTCTTTTGTT
TCTTTGCACTATTCCCTCCTCGCTCTTTCTATATTTCTGCAAGCTCCATT
CACACCTTCCTTTCCTGATCTCGTCCAAGTCCCCCCTTTTCTCCACGTGG
TTTTCATCGGAGAGGACTTCGTCCAACTTTCGCTCTCTCTTAGATGCTTC
TTACTTGATAGCGCTTCCTCTCGTCATGGACAAGATAAAAACAACAACTT
ACCCACCTCATCCTCCTGTTCTCCCAATCTTTATTTCTCATTTCTCAGAG
AACTTCTAGCGGCGCCAAGGTTGTGGGGGCGGCTGCTGTTGCTGGTGCTG
GTGCTGCTGGTGCTGGTGCTGCTGGTGCTGGTGCTGCTGGTGCTGCTGGG
GCAAGTATTGCTGCCACACTGCCCATTCGTTCTGCGGTAGCTGCTGCTGT
TGTTGCTGCTGCTGCTGTTGCTGCGGCGGATATTGCTGCTGCTGATGCTG
GTGCTGCTGGTG
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Coding sequence (CDS) from alignment at scaffold_68:67715..69276+

>mRNA_10938 ID=mRNA_10938|Name=jgi.p|Nanoce1779_2|612876|organism=Nannochloropsis oceanica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_68:67715..69276+ (Nannochloropsis oceanica)
ATGCACTCACCTTCTCGCTGCTCTTCTTTCTTTCTTTTGTTTCTTTGCAC
TATTCCCTCCTCGCTCTTTCTATATTTCTGCAAGCTCCATTCACACCTTC
CTTTCCTGATCTCGTCCAAGTCCCCCCTTTTCTCCACGTGGTTTTCATCG
GAGAGGACTTCGTCCAACTTTCGCTCTCTCTTAGATGCTTCTTACTTGAT
AGCGCTTCCTCTCGTCATGGACAAGATAAAAACAACAACTTACCCACCTC
ATCCTCCTGTTCTCCCAATCTTTATTTCTCATTTCTCAGAGAACTTCTAG
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Synonyms
Publications