jgi.p|Nanoce1779_2|612827, mRNA_10931 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612827
Unique Name	mRNA_10931
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2194
Alignment location	scaffold_68:38417..40698 +

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Properties


Property Name	Value
TranscriptId	612913
Track	FilteredModels2
ProteinId	612827

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_68	supercontig	scaffold_68:38417..40698 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612827	gene_10931	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612827	mRNA_10931-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10931	CDS_10931	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_68:38417..40698+
coding sequence from alignment at scaffold_68:38417..40698+

mRNA sequence

>mRNA_10931 ID=mRNA_10931|Name=jgi.p|Nanoce1779_2|612827|organism=Nannochloropsis oceanica|type=mRNA|length=2194bp
GCTTCATGTTGTACCCTTCCGTGACAAGAAAATTGGGAGGTGTCGTGTCT
TTCCTCTCTTCAAGGTGAGAAGGGGGCATCACAGGTGTAGCACATATCAA
ATTGCAGGCCAAGCAGAGGCCCCCACCAGTCCCTGAAGGCACGCATCACA
CCTGGTAATGCATTCTCGACCTGAGAACCCCTCCCTCTCCCCTTCTTTTT
CACGCCCAAGACAGCCATTAACTTTATTTACACAGCAAGATGCTTGGAAT
TACAGCCAGCGTGCTGCGCCGCACAACGATATTTGTTCCTTCGCGACTCA
CCCGCCTGCAGCCTGCTCTTCTTCAACTGCAGCCCAACCCCCTCCACAAC
CGTCCCCGCTTGTGTCAGCTTACTACACTGGGTAACCCTGAAGATCGTAC
CAAGTATCCTGTGTCCAACTCTATTGCTCTGCCTGTGCCTGGCCGCCCAA
TCAGTGACGACCCCCTCGAGGACCTGAAGCACGTCCACATCTCCTCCTCC
GATTCCGCTGAAGAAGCCTCTGCTCAGGGCCATCAAGATGACGTCGTGCT
AAATGAGGAAGCCAGAACATTTCTCCATGTATTGGAGGAGCGAGATCCCC
TGGCGCCTTGTCCGATGTGTGCGACGGGAGAGGCTCACACTTGCCCACAA
CTTGGCACCTATGACGACGTGCGAGACGAGGCATACCTGCAAGGCGAGGG
GCCTGAGATGTCGGGTATCAGTCAAGATGAGCGGAAACGCATCGTGGAAG
CTCGTGCTCGCATTATGGATGATGAAAAAACACCCTGTATGATTTGTGAG
CAACATCGCCTACAAGAGCAGATGGAGGAAGAGGCTCGATGTGTGCGGGA
GGACGCATCGCAGTGTTTGGTGGAGTACAAGGAGACTCAAGTGCACCCTC
GAGAAGGCCAGCATTACCGGCGAGCGGGGCAGATGCGCGTTACTCGAGAG
TCAGGTCCGGGCGATATCAAATCAATGCTTAAAACGACAGGCTATGGGTC
GCACGGAGCCCGGGAGAGTGGAAAGGGTTACGGAGACGTCGCCTGGGAGG
GGGGCGTGCCCATGTCTTTGACCGAGAACGAAGCAACACAGCTATCTGTA
GAAGGCGCGACAGGCCAGATCGAGGCCGAGATAGAGGCGGAACCAAATAT
CGGGCACGCAGTGCGGGAGGCTTTGTCGCCGGGCGCAGAGGCTGCGCCTA
ATCCCAAGGAAGTCCACTCTAATGTGTTGCGTACTCTCAAGAAGGAGGGG
GAAATGGATTCTTTGCGACAAGGGGAGGGTCCGGGAGGACAACTGGCAAA
CGAGCGGTACACACCACCCAACAAAAAGGACAATGAGGCTAGGGAAGATG
GGGGAAAGAAACGCAGGGGATGAACCTGAAAACGGATGGATGGATGAGAA
GGACCCGAAAACACGGAAATAAAAGAGGAATCAAATAAGAATGACAGAAT
GTACAGATCTCGATGAAAGTGGACAAGGAAATGAAAAGTTGTGGCGAAGG
GTAGGGAGAAGGCGGTACAATCAACCGTGATATGTGGCAAAGAAATGTGA
AGGTAGGGGCTAAGAGTGAGTATATCTCATTTGTCTTCTTAGCTTTGCGA
TGCGTATCGAAAAGGGCACTCCTGTAAGAATTTTATACTCTTCTAGAATC
TGGGTTCTAACAGGGTGTCTTTCAATTCTTCATATTGTAGGCGACTTGTA
TTACCAGTAGAAGAAAAATGAGGTAGACCGTTATTTTTCCGCATGCATAC
GTCAAGCTGAAAAAAATGTTACGTCGGGCTTTATTGCAGCAATAGGAATG
TCCAAGAAGCCATTGGTGGACGGCAGCTACAGCTTTGGCAGGTATGATGG
CAAGTTGTAAGGAAAGCTGAATGTCAAATGAGATCAAGAGTGTACATAGA
GAGCGATTTTGGCCACGAGAGAAAAAGGGAACAAACAGATTTAAATATTT
GTACATATCCAAAAACATGAATAATAAGACAACAACAAGATGAACCCGCT
TGAAAGTAAAATCTTGCAGGCATAAAAAAGACACGCTGAGCAGAAGATAT
TTAACGATGGATATGCAAGTGAAATCTTAAGTAAATGTGTCCACTTTCAG
AAATCATAGTGAGAAAAGCTATAATATGAGAAACAGTATGACAAACCCAA
ACCCAAAATGCAACAAGAAGAAAAAGAAAAGAGATTATCATGTA

protein sequence of jgi.p|Nanoce1779_2|612827

>mRNA_10931-protein ID=mRNA_10931-protein|Name=jgi.p|Nanoce1779_2|612827|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MLGITASVLRRTTIFVPSRLTRLQPALLQLQPNPLHNRPRLCQLTTLGNP
EDRTKYPVSNSIALPVPGRPISDDPLEDLKHVHISSSDSAEEASAQGHQD
DVVLNEEARTFLHVLEERDPLAPCPMCATGEAHTCPQLGTYDDVRDEAYL
QGEGPEMSGISQDERKRIVEARARIMDDEKTPCMICEQHRLQEQMEEEAR
CVREDASQCLVEYKETQVHPREGQHYRRAGQMRVTRESGPGDIKSMLKTT
GYGSHGARESGKGYGDVAWEGGVPMSLTENEATQLSVEGATGQIEAEIEA
EPNIGHAVREALSPGAEAAPNPKEVHSNVLRTLKKEGEMDSLRQGEGPGG
QLANERYTPPNKKDNEAREDGGKKRRG*

mRNA from alignment at scaffold_68:38417..40698+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10931 ID=mRNA_10931|Name=jgi.p|Nanoce1779_2|612827|organism=Nannochloropsis oceanica|type=mRNA|length=2282bp|location=Sequence derived from alignment at scaffold_68:38417..40698+ (Nannochloropsis oceanica)
GCTTCATGTTGTACCCTTCCGTGACAAGAAAATTGGGAGGTGTCGTGTCT
TTCCTCTCTTCAAGGTGAGAAGGGGGCATCACAGGTGTAGCACATATCAA
ATTGCAGGCCAAGCAGAGGCCCCCACCAGTCCCTGAAGGCACGCATCACA
CCTGGTAATGCATTCTCGACCTGAGAACCCCTCCCTCTCCCCTTCTTTTT
CACGCGTACGTTTGCCGCACAGAACATTCTCTTTTACCCAAACATCTCCA
TCACCTTGACACTCCCCTTTCCCTACCACCTCCCATCATACAGCCAAGAC
AGCCATTAACTTTATTTACACAGCAAGATGCTTGGAATTACAGCCAGCGT
GCTGCGCCGCACAACGATATTTGTTCCTTCGCGACTCACCCGCCTGCAGC
CTGCTCTTCTTCAACTGCAGCCCAACCCCCTCCACAACCGTCCCCGCTTG
TGTCAGCTTACTACACTGGGTAACCCTGAAGATCGTACCAAGTATCCTGT
GTCCAACTCTATTGCTCTGCCTGTGCCTGGCCGCCCAATCAGTGACGACC
CCCTCGAGGACCTGAAGCACGTCCACATCTCCTCCTCCGATTCCGCTGAA
GAAGCCTCTGCTCAGGGCCATCAAGATGACGTCGTGCTAAATGAGGAAGC
CAGAACATTTCTCCATGTATTGGAGGAGCGAGATCCCCTGGCGCCTTGTC
CGATGTGTGCGACGGGAGAGGCTCACACTTGCCCACAACTTGGCACCTAT
GACGACGTGCGAGACGAGGCATACCTGCAAGGCGAGGGGCCTGAGATGTC
GGGTATCAGTCAAGATGAGCGGAAACGCATCGTGGAAGCTCGTGCTCGCA
TTATGGATGATGAAAAAACACCCTGTATGATTTGTGAGCAACATCGCCTA
CAAGAGCAGATGGAGGAAGAGGCTCGATGTGTGCGGGAGGACGCATCGCA
GTGTTTGGTGGAGTACAAGGAGACTCAAGTGCACCCTCGAGAAGGCCAGC
ATTACCGGCGAGCGGGGCAGATGCGCGTTACTCGAGAGTCAGGTCCGGGC
GATATCAAATCAATGCTTAAAACGACAGGCTATGGGTCGCACGGAGCCCG
GGAGAGTGGAAAGGGTTACGGAGACGTCGCCTGGGAGGGGGGCGTGCCCA
TGTCTTTGACCGAGAACGAAGCAACACAGCTATCTGTAGAAGGCGCGACA
GGCCAGATCGAGGCCGAGATAGAGGCGGAACCAAATATCGGGCACGCAGT
GCGGGAGGCTTTGTCGCCGGGCGCAGAGGCTGCGCCTAATCCCAAGGAAG
TCCACTCTAATGTGTTGCGTACTCTCAAGAAGGAGGGGGAAATGGATTCT
TTGCGACAAGGGGAGGGTCCGGGAGGACAACTGGCAAACGAGCGGTACAC
ACCACCCAACAAAAAGGACAATGAGGCTAGGGAAGATGGGGGAAAGAAAC
GCAGGGGATGAACCTGAAAACGGATGGATGGATGAGAAGGACCCGAAAAC
ACGGAAATAAAAGAGGAATCAAATAAGAATGACAGAATGTACAGATCTCG
ATGAAAGTGGACAAGGAAATGAAAAGTTGTGGCGAAGGGTAGGGAGAAGG
CGGTACAATCAACCGTGATATGTGGCAAAGAAATGTGAAGGTAGGGGCTA
AGAGTGAGTATATCTCATTTGTCTTCTTAGCTTTGCGATGCGTATCGAAA
AGGGCACTCCTGTAAGAATTTTATACTCTTCTAGAATCTGGGTTCTAACA
GGGTGTCTTTCAATTCTTCATATTGTAGGCGACTTGTATTACCAGTAGAA
GAAAAATGAGGTAGACCGTTATTTTTCCGCATGCATACGTCAAGCTGAAA
AAAATGTTACGTCGGGCTTTATTGCAGCAATAGGAATGTCCAAGAAGCCA
TTGGTGGACGGCAGCTACAGCTTTGGCAGGTATGATGGCAAGTTGTAAGG
AAAGCTGAATGTCAAATGAGATCAAGAGTGTACATAGAGAGCGATTTTGG
CCACGAGAGAAAAAGGGAACAAACAGATTTAAATATTTGTACATATCCAA
AAACATGAATAATAAGACAACAACAAGATGAACCCGCTTGAAAGTAAAAT
CTTGCAGGCATAAAAAAGACACGCTGAGCAGAAGATATTTAACGATGGAT
ATGCAAGTGAAATCTTAAGTAAATGTGTCCACTTTCAGAAATCATAGTGA
GAAAAGCTATAATATGAGAAACAGTATGACAAACCCAAACCCAAAATGCA
ACAAGAAGAAAAAGAAAAGAGATTATCATGTA

Coding sequence (CDS) from alignment at scaffold_68:38417..40698+

>mRNA_10931 ID=mRNA_10931|Name=jgi.p|Nanoce1779_2|612827|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_68:38417..40698+ (Nannochloropsis oceanica)
ATGCTTGGAATTACAGCCAGCGTGCTGCGCCGCACAACGATATTTGTTCC
TTCGCGACTCACCCGCCTGCAGCCTGCTCTTCTTCAACTGCAGCCCAACC
CCCTCCACAACCGTCCCCGCTTGTGTCAGCTTACTACACTGGGTAACCCT
GAAGATCGTACCAAGTATCCTGTGTCCAACTCTATTGCTCTGCCTGTGCC
TGGCCGCCCAATCAGTGACGACCCCCTCGAGGACCTGAAGCACGTCCACA
TCTCCTCCTCCGATTCCGCTGAAGAAGCCTCTGCTCAGGGCCATCAAGAT
GACGTCGTGCTAAATGAGGAAGCCAGAACATTTCTCCATGTATTGGAGGA
GCGAGATCCCCTGGCGCCTTGTCCGATGTGTGCGACGGGAGAGGCTCACA
CTTGCCCACAACTTGGCACCTATGACGACGTGCGAGACGAGGCATACCTG
CAAGGCGAGGGGCCTGAGATGTCGGGTATCAGTCAAGATGAGCGGAAACG
CATCGTGGAAGCTCGTGCTCGCATTATGGATGATGAAAAAACACCCTGTA
TGATTTGTGAGCAACATCGCCTACAAGAGCAGATGGAGGAAGAGGCTCGA
TGTGTGCGGGAGGACGCATCGCAGTGTTTGGTGGAGTACAAGGAGACTCA
AGTGCACCCTCGAGAAGGCCAGCATTACCGGCGAGCGGGGCAGATGCGCG
TTACTCGAGAGTCAGGTCCGGGCGATATCAAATCAATGCTTAAAACGACA
GGCTATGGGTCGCACGGAGCCCGGGAGAGTGGAAAGGGTTACGGAGACGT
CGCCTGGGAGGGGGGCGTGCCCATGTCTTTGACCGAGAACGAAGCAACAC
AGCTATCTGTAGAAGGCGCGACAGGCCAGATCGAGGCCGAGATAGAGGCG
GAACCAAATATCGGGCACGCAGTGCGGGAGGCTTTGTCGCCGGGCGCAGA
GGCTGCGCCTAATCCCAAGGAAGTCCACTCTAATGTGTTGCGTACTCTCA
AGAAGGAGGGGGAAATGGATTCTTTGCGACAAGGGGAGGGTCCGGGAGGA
CAACTGGCAAACGAGCGGTACACACCACCCAACAAAAAGGACAATGAGGC
TAGGGAAGATGGGGGAAAGAAACGCAGGGGATGA

Synonyms

Publications