jgi.p|Nanoce1779_2|612823, mRNA_10930 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612823
Unique NamemRNA_10930
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1145
Alignment locationscaffold_68:36307..37451 -

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Properties
Property NameValue
TranscriptId612909
TrackFilteredModels2
ProteinId612823
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_68supercontigscaffold_68:36307..37451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612823gene_10930Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612823mRNA_10930-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10930CDS_10930Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10930 ID=mRNA_10930|Name=jgi.p|Nanoce1779_2|612823|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp
GAAGGAGCACAGTCGGGGACGCTAATGTGCTATGAGGCCTTGGTCAGGCC
CAAGGAACTGATCCCGATCATGGCAGTAGAGTGGAAGATGAAGCGGGACC
TGGCAGCGAATCTATCAGCCTTGAAAAGGGTGGCGGAGGAAGAGGGAGGG
GAGGAGGAGGTTGAAATGGAGGGCGAAGAGGGGGAAGAGAGGTTTTGGGA
TTGTGTGGAAGAGGAGGAGGAGGAGGAGGAGGAGAATATAAAGGTGCGGA
TAGGGAGAGAAGACGTTCAAGCGAGAAAGTCTTTGGGCTCGACCACAAGG
GGACGGTCTTCCTCCTTCCGGTCCTCCTTTACTTCCTCCTTCCCATTTCT
GCCCCGGCAAAGTCCACAAAAAGAAGAGGCTCGAAGCACCCTCTGTCTCC
CTTCACAGCAGCAAGAGCGACGAGCACCCATCATGTCCTCCTTCTTTTCC
TTCCGACGTGTCGCTGTCGCTTTCCCTCGTTTAAATGGCAAGGGCGCGGG
AGAGGGAAGGGAAAGGTGGATTACGAAGAGAAGGAGGGGGAGGGAGACGA
TCGAAGAAGTGTTAAGTCAGTGATCATGAAGTCAGAGGGCCAATGCCGAC
CCCACCGAGGTAGCAATTCAATAAATACAAATACATTACAACATGAAGGA
GGAGGTGAGGCTAGACTTTGCTTTCAACAGAAACAAGTCAGGGCAAGTCA
AACCATGCCGGAGGCAGCGAGTGAACGAAGGTGGAAGAGATTGAGGAAGT
CGGCAGATCCAACCCGCCCGATGAGGCCCTGAATAAACAGGAAATTGGTA
GGGAGGACTTGCTGGCTGAGTGCACAGAGAGTGGGGAGGTATTGACATAG
ACAAGGGAGGAGGCCGGCGAGTAAGATACCCTCGAAAGAAGAGGATGAAG
AGGCATGAATAGAGCTGGTATCCAAAAAATGGGGACGTAGGGTGGAAGGA
TGGACACACGTACTCGAAGACTGATGTGGTAATGTTGAGAAGAAAGTAAC
AATAGGGGAGGAATACAACAGGGAAAAGAAGAAAAACAGTATAGTCGCGA
GAAAACCCATAGAACCTACTTCGAGGAAATCCAGCCAACCAAGGCCGGCG
AACTTCAAAATGAAACAGCCATACAAAAATAAAGTGGACTAAAGA
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protein sequence of jgi.p|Nanoce1779_2|612823

>mRNA_10930-protein ID=mRNA_10930-protein|Name=jgi.p|Nanoce1779_2|612823|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MCYEALVRPKELIPIMAVEWKMKRDLAANLSALKRVAEEEGGEEEVEMEG
EEGEERFWDCVEEEEEEEEENIKVRIGREDVQARKSLGSTTRGRSSSFRS
SFTSSFPFLPRQSPQKEEARSTLCLPSQQQERRAPIMSSFFSFRRVAVAF
PRLNGKGAGEGRERWITKRRRGRETIEEVLSQ*
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mRNA from alignment at scaffold_68:36307..37451-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10930 ID=mRNA_10930|Name=jgi.p|Nanoce1779_2|612823|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp|location=Sequence derived from alignment at scaffold_68:36307..37451- (Nannochloropsis oceanica)
GAAGGAGCACAGTCGGGGACGCTAATGTGCTATGAGGCCTTGGTCAGGCC
CAAGGAACTGATCCCGATCATGGCAGTAGAGTGGAAGATGAAGCGGGACC
TGGCAGCGAATCTATCAGCCTTGAAAAGGGTGGCGGAGGAAGAGGGAGGG
GAGGAGGAGGTTGAAATGGAGGGCGAAGAGGGGGAAGAGAGGTTTTGGGA
TTGTGTGGAAGAGGAGGAGGAGGAGGAGGAGGAGAATATAAAGGTGCGGA
TAGGGAGAGAAGACGTTCAAGCGAGAAAGTCTTTGGGCTCGACCACAAGG
GGACGGTCTTCCTCCTTCCGGTCCTCCTTTACTTCCTCCTTCCCATTTCT
GCCCCGGCAAAGTCCACAAAAAGAAGAGGCTCGAAGCACCCTCTGTCTCC
CTTCACAGCAGCAAGAGCGACGAGCACCCATCATGTCCTCCTTCTTTTCC
TTCCGACGTGTCGCTGTCGCTTTCCCTCGTTTAAATGGCAAGGGCGCGGG
AGAGGGAAGGGAAAGGTGGATTACGAAGAGAAGGAGGGGGAGGGAGACGA
TCGAAGAAGTGTTAAGTCAGTGATCATGAAGTCAGAGGGCCAATGCCGAC
CCCACCGAGGTAGCAATTCAATAAATACAAATACATTACAACATGAAGGA
GGAGGTGAGGCTAGACTTTGCTTTCAACAGAAACAAGTCAGGGCAAGTCA
AACCATGCCGGAGGCAGCGAGTGAACGAAGGTGGAAGAGATTGAGGAAGT
CGGCAGATCCAACCCGCCCGATGAGGCCCTGAATAAACAGGAAATTGGTA
GGGAGGACTTGCTGGCTGAGTGCACAGAGAGTGGGGAGGTATTGACATAG
ACAAGGGAGGAGGCCGGCGAGTAAGATACCCTCGAAAGAAGAGGATGAAG
AGGCATGAATAGAGCTGGTATCCAAAAAATGGGGACGTAGGGTGGAAGGA
TGGACACACGTACTCGAAGACTGATGTGGTAATGTTGAGAAGAAAGTAAC
AATAGGGGAGGAATACAACAGGGAAAAGAAGAAAAACAGTATAGTCGCGA
GAAAACCCATAGAACCTACTTCGAGGAAATCCAGCCAACCAAGGCCGGCG
AACTTCAAAATGAAACAGCCATACAAAAATAAAGTGGACTAAAGA
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Coding sequence (CDS) from alignment at scaffold_68:36307..37451-

>mRNA_10930 ID=mRNA_10930|Name=jgi.p|Nanoce1779_2|612823|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_68:36307..37451- (Nannochloropsis oceanica)
ATGTGCTATGAGGCCTTGGTCAGGCCCAAGGAACTGATCCCGATCATGGC
AGTAGAGTGGAAGATGAAGCGGGACCTGGCAGCGAATCTATCAGCCTTGA
AAAGGGTGGCGGAGGAAGAGGGAGGGGAGGAGGAGGTTGAAATGGAGGGC
GAAGAGGGGGAAGAGAGGTTTTGGGATTGTGTGGAAGAGGAGGAGGAGGA
GGAGGAGGAGAATATAAAGGTGCGGATAGGGAGAGAAGACGTTCAAGCGA
GAAAGTCTTTGGGCTCGACCACAAGGGGACGGTCTTCCTCCTTCCGGTCC
TCCTTTACTTCCTCCTTCCCATTTCTGCCCCGGCAAAGTCCACAAAAAGA
AGAGGCTCGAAGCACCCTCTGTCTCCCTTCACAGCAGCAAGAGCGACGAG
CACCCATCATGTCCTCCTTCTTTTCCTTCCGACGTGTCGCTGTCGCTTTC
CCTCGTTTAAATGGCAAGGGCGCGGGAGAGGGAAGGGAAAGGTGGATTAC
GAAGAGAAGGAGGGGGAGGGAGACGATCGAAGAAGTGTTAAGTCAGTGA
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Synonyms
Publications