jgi.p|Nanoce1779_2|575289, mRNA_1093 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575289
Unique NamemRNA_1093
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1027
Alignment locationscaffold_2:1201898..1203190 -

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Properties
Property NameValue
TranscriptId575375
TrackFilteredModels2
ProteinId575289
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1201898..1203190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575289gene_1093Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575289mRNA_1093-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1093CDS_1093Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1093 ID=mRNA_1093|Name=jgi.p|Nanoce1779_2|575289|organism=Nannochloropsis oceanica|type=mRNA|length=1027bp
GCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAAGCCCGTCCAAATG
ATGACCGAGAAAGGTATGGTGCAACTGGACGATAACAGCTTTTTTGATGG
CTTCGAGGGTTTTCACGGCCGTCGTGTATCGTACTCAAGTCAGCCGAAAG
CGAGGCATAACATCGTCTTTGAAATTTGGCGGCAACGCACCCCCGAGGAC
GTGGCAATTTTGTACAAGGGACAGCATCAATATTCAGCTTCGAGACGAGT
GCAGGAGGCCATCAACGAACAGGTCTCTACGCTATTGGGCATGTTTCTGC
GTGAGCCGGACTTCCAATCCCGCCTGCAGATCCAGGGAGGGCAGCTTGCC
AATCTATTTTTCAAGCTCCAGTTACTCGGCTACATGTTCTCAAACGCTGA
CAAAGTCCTGTCGGCCTCGAGCAGTCTGAATTTTAACAGAAGAGGAAGAG
ATGACGGAGTCGCAGGAGGAGGGGGGAGACCAGCTCCCCCGCCGGTGGGA
AAGTTGGAAGGGACGGTAACAGTTTTACAAGGGAGGGGGAATGGGCTGGG
GAGTGGGGAGTGGGGGAGGGATGGAGAGGGTAGGAGTGTGACGATGGGGG
CGAAGGAGCTGCTGGGAAGTTTGGTCAGGGAGGTTGAGGTGCTGAGGGAG
CAAGTGGAGCGTGCCAAGATGACCCGAGAAGTGAACAGGCAAAGCGATCT
TCTGGCATTCATTCGGGCGCTGCCGGAGGATCAACAGCGGGCCTTGACTG
AAAATATTCCTGATTACACGCTGGATTGCATGCGGAAGCTGGTCGATCTG
GCCCTTGCTCGCGCCATTCCAACGGTCGGAAATCAGTGGAGCCCCGCCAC
GCCTGTTCTTATCCCCAGTAAGAGCATTTTTGCGGAACTTTGTATTATGC
AGGTCGTCCAGGGCTATCTGTTAGCGGCGACAGAGGAGGACCAAGAACAG
CAGTTGAAGCTGTTTGAGGGAGGGACGGGGGGAGGGAGTGGTGGTGGGGG
AGGAGGGGATTTTCTGTAGGGAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|575289

>mRNA_1093-protein ID=mRNA_1093-protein|Name=jgi.p|Nanoce1779_2|575289|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MMTEKGMVQLDDNSFFDGFEGFHGRRVSYSSQPKARHNIVFEIWRQRTPE
DVAILYKGQHQYSASRRVQEAINEQVSTLLGMFLREPDFQSRLQIQGGQL
ANLFFKLQLLGYMFSNADKVLSASSSLNFNRRGRDDGVAGGGGRPAPPPV
GKLEGTVTVLQGRGNGLGSGEWGRDGEGRSVTMGAKELLGSLVREVEVLR
EQVERAKMTREVNRQSDLLAFIRALPEDQQRALTENIPDYTLDCMRKLVD
LALARAIPTVGNQWSPATPVLIPSKSIFAELCIMQVVQGYLLAATEEDQE
QQLKLFEGGTGGGSGGGGGGDFL*
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mRNA from alignment at scaffold_2:1201898..1203190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1093 ID=mRNA_1093|Name=jgi.p|Nanoce1779_2|575289|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp|location=Sequence derived from alignment at scaffold_2:1201898..1203190- (Nannochloropsis oceanica)
GCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAAGCCCGTCCAAATG
ATGACCGAGAAAGGTATGGTGCAACTGGACGATAACAGCTTTTTTGATGG
CTTCGAGGGTTTTCACGGCCGTCGTGTATCGTACTCAAGTCAGCCGAAAG
CGAGGCATAACATCGTCTTTGAAATTTGGCGGCAACGCACCCCCGAGGAC
GTGGCAATTTTGTACAAGGGACAGCATCAATATTCAGCTTCGAGACGAGT
GCAGGAGGCCATCAACGAACAGGTCTCTACGCTATTGGGTAAGCCCTGCA
TATTCCACGTGTCTCCCTCATCCTTCTTTCCCTTCTTGCTTCAGTCATTC
TGAGGGTGATTGTGACCAAAGGATGGCGTCAATAGTCGGCCTCGAGGCAG
TCGACGAACACATCTGTCTCTACCTTGCCACCCATCCCTCCTCCTTTTTC
TCTCTCCCTTCCCTCGACCCCAGTCGGCACCCCCTCCCCCCCACCCCCTC
CCTTTTCTACCTCCCCCTCATTCCCCCTCCCCCCGTCCCCGACCCCCACC
CCAGGCATGTTTCTGCGTGAGCCGGACTTCCAATCCCGCCTGCAGATCCA
GGGAGGGCAGCTTGCCAATCTATTTTTCAAGCTCCAGTTACTCGGCTACA
TGTTCTCAAACGCTGACAAAGTCCTGTCGGCCTCGAGCAGTCTGAATTTT
AACAGAAGAGGAAGAGATGACGGAGTCGCAGGAGGAGGGGGGAGACCAGC
TCCCCCGCCGGTGGGAAAGTTGGAAGGGACGGTAACAGTTTTACAAGGGA
GGGGGAATGGGCTGGGGAGTGGGGAGTGGGGGAGGGATGGAGAGGGTAGG
AGTGTGACGATGGGGGCGAAGGAGCTGCTGGGAAGTTTGGTCAGGGAGGT
TGAGGTGCTGAGGGAGCAAGTGGAGCGTGCCAAGATGACCCGAGAAGTGA
ACAGGCAAAGCGATCTTCTGGCATTCATTCGGGCGCTGCCGGAGGATCAA
CAGCGGGCCTTGACTGAAAATATTCCTGATTACACGCTGGATTGCATGCG
GAAGCTGGTCGATCTGGCCCTTGCTCGCGCCATTCCAACGGTCGGAAATC
AGTGGAGCCCCGCCACGCCTGTTCTTATCCCCAGTAAGAGCATTTTTGCG
GAACTTTGTATTATGCAGGTCGTCCAGGGCTATCTGTTAGCGGCGACAGA
GGAGGACCAAGAACAGCAGTTGAAGCTGTTTGAGGGAGGGACGGGGGGAG
GGAGTGGTGGTGGGGGAGGAGGGGATTTTCTGTAGGGAGGGAG
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Coding sequence (CDS) from alignment at scaffold_2:1201898..1203190-

>mRNA_1093 ID=mRNA_1093|Name=jgi.p|Nanoce1779_2|575289|organism=Nannochloropsis oceanica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_2:1201898..1203190- (Nannochloropsis oceanica)
GCATGTTTCTGCGTGAGCCGGACTTCCAATCCCGCCTGCAGATCCAGGGA
GGGCAGCTTGCCAATCTATTTTTCAAGCTCCAGTTACTCGGCTACATGTT
CTCAAACGCTGACAAAGTCCTGTCGGCCTCGAGCAGTCTGAATTTTAACA
GAAGAGGAAGAGATGACGGAGTCGCAGGAGGAGGGGGGAGACCAGCTCCC
CCGCCGGTGGGAAAGTTGGAAGGGACGGTAACAGTTTTACAAGGGAGGGG
GAATGGGCTGGGGAGTGGGGAGTGGGGGAGGGATGGAGAGGGTAGGAGTG
TGACGATGGGGGCGAAGGAGCTGCTGGGAAGTTTGGTCAGGGAGGTTGAG
GTGCTGAGGGAGCAAGTGGAGCGTGCCAAGATGACCCGAGAAGTGAACAG
GCAAAGCGATCTTCTGGCATTCATTCGGGCGCTGCCGGAGGATCAACAGC
GGGCCTTGACTGAAAATATTCCTGATTACACGCTGGATTGCATGCGGAAG
CTGGTCGATCTGGCCCTTGCTCGCGCCATTCCAACGGTCGGAAATCAGTG
GAGCCCCGCCACGCCTGTTCTTATCCCCAGTAAGAGCATTTTTGCGGAAC
TTTGTATTATGCAGGTCGTCCAGGGCTATCTGTTAGCGGCGACAGAGGAG
GACCAAGAACAGCAGTTGAAGCTGTTTGAGGGAGGGACGGGGGGAGGGAG
TGGTGGTGGGGGAGGAGGGGATTTTCTGTAGATGATGACCGAGAAAGGTA
TGGTGCAACTGGACGATAACAGCTTTTTTGATGGCTTCGAGGGTTTTCAC
GGCCGTCGTGTATCGTACTCAAGTCAGCCGAAAGCGAGGCATAACATCGT
CTTTGAAATTTGGCGGCAACGCACCCCCGAGGACGTGGCAATTTTGTACA
AGGGACAGCATCAATATTCAGCTTCGAGACGAGTGCAGGAGGCCATCAAC
GAACAGGTCTCTACGCTATTGGGCATGTTTCTGCGTGAGCCGGACTTCCA
ATCCCGCCTGCAGATCCAGGGAGGGCAGCTTGCCAATCTATTTTTCAAGC
TCCAGTTACTCGGCTACATGTTCTCAAACGCTGACAAAGTCCTGTCGGCC
TCGAGCAGTCTGAATTTTAACAGAAGAGGAAGAGATGACGGAGTCGCAGG
AGGAGGGGGGAGACCAGCTCCCCCGCCGGTGGGAAAGTTGGAAGGGACGG
TAACAGTTTTACAAGGGAGGGGGAATGGGCTGGGGAGTGGGGAGTGGGGG
AGGGATGGAGAGGGTAGGAGTGTGACGATGGGGGCGAAGGAGCTGCTGGG
AAGTTTGGTCAGGGAGGTTGAGGTGCTGAGGGAGCAAGTGGAGCGTGCCA
AGATGACCCGAGAAGTGAACAGGCAAAGCGATCTTCTGGCATTCATTCGG
GCGCTGCCGGAGGATCAACAGCGGGCCTTGACTGAAAATATTCCTGATTA
CACGCTGGATTGCATGCGGAAGCTGGTCGATCTGGCCCTTGCTCGCGCCA
TTCCAACGGTCGGAAATCAGTGGAGCCCCGCCACGCCTGTTCTTATCCCC
AGTAAGAGCATTTTTGCGGAACTTTGTATTATGCAGGTCGTCCAGGGCTA
TCTGTTAGCGGCGACAGAGGAGGACCAAGAACAGCAGTTGAAGCTGTTTG
AGGGAGGGACGGGGGGAGGGAGTGGTGGTGGGGGAGGAGGGGATTTTCTG
TAGATGATGACCGAGAAAGGTATGGTGCAACTGGACGATAACAGCTTTTT
TGATGGCTTCGAGGGTTTTCACGGCCGTCGTGTATCGTACTCAAGTCAGC
CGAAAGCGAGGCATAACATCGTCTTTGAAATTTGGCGGCAACGCACCCCC
GAGGACGTGGCAATTTTGTACAAGGGACAGCATCAATATTCAGCTTCGAG
ACGAGTGCAGGAGGCCATCAACGAACAGGTCTCTACGCTATTGG
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Synonyms
Publications