jgi.p|Nanoce1779_2|385788, mRNA_10927 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|385788
Unique NamemRNA_10927
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length666
Alignment locationscaffold_68:32326..33269 +

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Properties
Property NameValue
TranscriptId385874
TrackFilteredModels2
ProteinId385788
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_68supercontigscaffold_68:32326..33269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|385788gene_10927Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|385788mRNA_10927-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10927CDS_10927Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10927 ID=mRNA_10927|Name=jgi.p|Nanoce1779_2|385788|organism=Nannochloropsis oceanica|type=mRNA|length=666bp
GAGGGAAAGAGGAAATGAAGGAGGGTGGGAGAAAGGGATGAGAGAGGGAG
AATTATGTTACTACTACTGCTACCGTTACCCACCACCAAGAATCTTACAA
TTCCTGGCCTCGTTCCCTTCCTCCCTGCCGTTCACGCCACAGACGGCGCC
AGTCCCACCTCCGACAGTGTCGTCCTCCTCCCCGCCTCCCACCGCTCCTT
TACCGTCGCCTTGCCGCCCATGGCCCTCCCCACGGCCGAGACCACTTACA
TGTGCATGTTTTTCCAACCGCCACAAGACACCAAGTTCCACATTTACAAC
TTCAAGCTCACCGACGGACAAGAGGACGTGAACGAGGCCTATGTCCACCA
CATGGGCATCTACTCCACCGGCGACAACACACCCGCGCACAAGCCCGGCC
AGCCCTTCGAGTGCAGCAGGACGCCAGACATGGGTTTACCCATCATCATT
AACGACCGCAACTCCTGGTCCACGCCCTCCCCCCTTGCCTACCAGAGCGT
GGACGCTGGCATCCCATTTGGAAAGGGCTACGACAAATACTGGGTGGGAA
GGAAGGGAGGGAATCATTCCTTTTCCACTTTTTGTAGTCAAGATTGAGTC
ATCACTGGGCTGGGTCGCTGAATGCTCCTCCATTCGTCCTTACCTCCTTT
CCTCTCTCAGATGCTG
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protein sequence of jgi.p|Nanoce1779_2|385788

>mRNA_10927-protein ID=mRNA_10927-protein|Name=jgi.p|Nanoce1779_2|385788|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MLLLLLPLPTTKNLTIPGLVPFLPAVHATDGASPTSDSVVLLPASHRSFT
VALPPMALPTAETTYMCMFFQPPQDTKFHIYNFKLTDGQEDVNEAYVHHM
GIYSTGDNTPAHKPGQPFECSRTPDMGLPIIINDRNSWSTPSPLAYQSVD
AGIPFGKGYDKYWVGRKGGNHSFSTFCSQD*
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mRNA from alignment at scaffold_68:32326..33269+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10927 ID=mRNA_10927|Name=jgi.p|Nanoce1779_2|385788|organism=Nannochloropsis oceanica|type=mRNA|length=944bp|location=Sequence derived from alignment at scaffold_68:32326..33269+ (Nannochloropsis oceanica)
GAGGGAAAGAGGAAATGAAGGAGGGTGGGAGAAAGGGATGAGAGAGGGAG
AATTATGTTACTACTACTGCTACCGTTACCCACCACCAAGAATCTTACAA
TTCCTGGCCTCGTTCCCTTCCTCCCTGCCGTTCACGCCACAGACGGCGCC
AGTCCCACCTCCGACAGTGTCGTCCTCCTCCCCGCCTCCCACCGCTCCTT
TACCGTCGCCTTGCCGCCCATGGCCCTCCCCACGGCCGAGACCACTTACA
TGTGCATGTTTTTCCAACCGCCACAAGACACCAAGTTCCACATTTACAAC
TTCAAGCTCACCGACGGACAAGAGGTTTTCCCTCTCCCCTTGCCCTCCCT
CCTTCCCTTCCTTCCTTTCTGGTCGTTAAAGTCCAGTCACTCACCTTTCC
TCCCTCCCTCCCTCCCTCCCCCGGCAGGACGTGAACGAGGCCTATGTCCA
CCACATGGGCATCTACTCCACCGGCGACAACACACCCGCGCACAAGCCCG
GCCAGCCCTTCGAGTGCAGCAGGACGCCAGGTAGGGAGGAAGGGGGGAAA
GGGGGGGAGGAAGGTGCACGTCAAATCATGATTTACAGGAACACACGTCA
AGTCATGATTTACATGAACAAGGCTCGAATAGGACAGGACTCACGCATCC
TCTCCTCCCCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCCCCCTTCCTC
CCCAGACATGGGTTTACCCATCATCATTAACGACCGCAACTCCTGGTCCA
CGCCCTCCCCCCTTGCCTACCAGAGCGTGGACGCTGGCATCCCATTTGGA
AAGGGCTACGACAAATACTGGGTGGGAAGGAAGGGAGGGAATCATTCCTT
TTCCACTTTTTGTAGTCAAGATTGAGTCATCACTGGGCTGGGTCGCTGAA
TGCTCCTCCATTCGTCCTTACCTCCTTTCCTCTCTCAGATGCTG
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Coding sequence (CDS) from alignment at scaffold_68:32326..33269+

>mRNA_10927 ID=mRNA_10927|Name=jgi.p|Nanoce1779_2|385788|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at scaffold_68:32326..33269+ (Nannochloropsis oceanica)
ATGTTACTACTACTGCTACCGTTACCCACCACCAAGAATCTTACAATTCC
TGGCCTCGTTCCCTTCCTCCCTGCCGTTCACGCCACAGACGGCGCCAGTC
CCACCTCCGACAGTGTCGTCCTCCTCCCCGCCTCCCACCGCTCCTTTACC
GTCGCCTTGCCGCCCATGGCCCTCCCCACGGCCGAGACCACTTACATGTG
CATGTTTTTCCAACCGCCACAAGACACCAAGTTCCACATTTACAACTTCA
AGCTCACCGACGGACAAGAGGACGTGAACGAGGCCTATGTCCACCACATG
GGCATCTACTCCACCGGCGACAACACACCCGCGCACAAGCCCGGCCAGCC
CTTCGAGTGCAGCAGGACGCCAGACATGGGTTTACCCATCATCATTAACG
ACCGCAACTCCTGGTCCACGCCCTCCCCCCTTGCCTACCAGAGCGTGGAC
GCTGGCATCCCATTTGGAAAGGGCTACGACAAATACTGGGTGGGAAGGAA
GGGAGGGAATCATTCCTTTTCCACTTTTTGTAGTCAAGATTGAATGTTAC
TACTACTGCTACCGTTACCCACCACCAAGAATCTTACAATTCCTGGCCTC
GTTCCCTTCCTCCCTGCCGTTCACGCCACAGACGGCGCCAGTCCCACCTC
CGACAGTGTCGTCCTCCTCCCCGCCTCCCACCGCTCCTTTACCGTCGCCT
TGCCGCCCATGGCCCTCCCCACGGCCGAGACCACTTACATGTGCATGTTT
TTCCAACCGCCACAAGACACCAAGTTCCACATTTACAACTTCAAGCTCAC
CGACGGACAAGAGGACGTGAACGAGGCCTATGTCCACCACATGGGCATCT
ACTCCACCGGCGACAACACACCCGCGCACAAGCCCGGCCAGCCCTTCGAG
TGCAGCAGGACGCCAGACATGGGTTTACCCATCATCATTAACGACCGCAA
CTCCTGGTCCACGCCCTCCCCCCTTGCCTACCAGAGCGTGGACGCTGGCA
TCCCATTTGGAAAGGGCTACGACAAATACTGGGTGGGAAGGAAGGGAGGG
AATCATTCCTTTTCCACTTTTTGTAGTCAAGATTGAATGTTACTACTACT
GCTACCGTTACCCACCACCAAGAATCTTACAATTCCTGGCCTCGTTCCCT
TCCTCCCTGCCGTTCACGCCACAGACGGCGCCAGTCCCACCTCCGACAGT
GTCGTCCTCCTCCCCGCCTCCCACCGCTCCTTTACCGTCGCCTTGCCGCC
CATGGCCCTCCCCACGGCCGAGACCACTTACATGTGCATGTTTTTCCAAC
CGCCACAAGACACCAAGTTCCACATTTACAACTTCAAGCTCACCGACGGA
CAAGAGGACGTGAACGAGGCCTATGTCCACCACATGGGCATCTACTCCAC
CGGCGACAACACACCCGCGCACAAGCCCGGCCAGCCCTTCGAGTGCAGCA
GGACGCCAGACATGGGTTTACCCATCATCATTAACGACCGCAACTCCTGG
TCCACGCCCTCCCCCCTTGCCTACCAGAGCGTGGACGCTGGCATCCCATT
TGGAAAGGGCTACGACAAATACTGGGTGGGAAGGAAGGGAGGGAATCATT
CCTTTTCCACTTTTTGTAGTCAAGATTGA
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Synonyms
Publications