jgi.p|Nanoce1779_2|612792, mRNA_10924 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612792
Unique NamemRNA_10924
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length413
Alignment locationscaffold_68:14209..14621 +

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Properties
Property NameValue
TranscriptId612878
TrackFilteredModels2
ProteinId612792
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_68supercontigscaffold_68:14209..14621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612792gene_10924Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612792mRNA_10924-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10924CDS_10924Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10924 ID=mRNA_10924|Name=jgi.p|Nanoce1779_2|612792|organism=Nannochloropsis oceanica|type=mRNA|length=413bp
ACGCCAAAATAAGCCAGGGCAAGATGTGGCACCTTATTCGACACCAAAAT
TTAATGCCTTTGTCTACACTTATCGTTGCTGTGCTTCCAAACCTCACTTT
TTTGACCACTCGCGCCAAGGATCGTTATATTTTATGCGGTAACGGATTTC
TCTGGAGGGGGAGGAGGTTAATGAGATGGAGAGGGCTGGTCAGCTACTCA
TTTATCCTATCAGGAAGCAGGATAAGAAGCTTCAGTCATATGCGATGAGA
GAAATTTATAAGCGTGGCAGCCGTGGACATTATCAAAGCTCGCACAAGCA
CTAGTCTTTGAGTGCCCTCTTCAAGGATGATATGAAGGAGGAAAAGGAAG
CGCGGTGGGAAGAGAGGGAAAGTCGTCGGGAGGAGTGGATGGAGAGGAGG
AGGAGGAGGAAAA
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protein sequence of jgi.p|Nanoce1779_2|612792

>mRNA_10924-protein ID=mRNA_10924-protein|Name=jgi.p|Nanoce1779_2|612792|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MWHLIRHQNLMPLSTLIVAVLPNLTFLTTRAKDRYILCGNGFLWRGRRLM
RWRGLVSYSFILSGSRIRSFSHMR*
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mRNA from alignment at scaffold_68:14209..14621+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10924 ID=mRNA_10924|Name=jgi.p|Nanoce1779_2|612792|organism=Nannochloropsis oceanica|type=mRNA|length=413bp|location=Sequence derived from alignment at scaffold_68:14209..14621+ (Nannochloropsis oceanica)
ACGCCAAAATAAGCCAGGGCAAGATGTGGCACCTTATTCGACACCAAAAT
TTAATGCCTTTGTCTACACTTATCGTTGCTGTGCTTCCAAACCTCACTTT
TTTGACCACTCGCGCCAAGGATCGTTATATTTTATGCGGTAACGGATTTC
TCTGGAGGGGGAGGAGGTTAATGAGATGGAGAGGGCTGGTCAGCTACTCA
TTTATCCTATCAGGAAGCAGGATAAGAAGCTTCAGTCATATGCGATGAGA
GAAATTTATAAGCGTGGCAGCCGTGGACATTATCAAAGCTCGCACAAGCA
CTAGTCTTTGAGTGCCCTCTTCAAGGATGATATGAAGGAGGAAAAGGAAG
CGCGGTGGGAAGAGAGGGAAAGTCGTCGGGAGGAGTGGATGGAGAGGAGG
AGGAGGAGGAAAA
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Coding sequence (CDS) from alignment at scaffold_68:14209..14621+

>mRNA_10924 ID=mRNA_10924|Name=jgi.p|Nanoce1779_2|612792|organism=Nannochloropsis oceanica|type=CDS|length=225bp|location=Sequence derived from alignment at scaffold_68:14209..14621+ (Nannochloropsis oceanica)
ATGTGGCACCTTATTCGACACCAAAATTTAATGCCTTTGTCTACACTTAT
CGTTGCTGTGCTTCCAAACCTCACTTTTTTGACCACTCGCGCCAAGGATC
GTTATATTTTATGCGGTAACGGATTTCTCTGGAGGGGGAGGAGGTTAATG
AGATGGAGAGGGCTGGTCAGCTACTCATTTATCCTATCAGGAAGCAGGAT
AAGAAGCTTCAGTCATATGCGATGA
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Synonyms
Publications