jgi.p|Nanoce1779_2|570038, mRNA_10923 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|570038
Unique NamemRNA_10923
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1056
Alignment locationscaffold_68:10592..11647 -

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Properties
Property NameValue
TranscriptId570124
TrackFilteredModels2
ProteinId570038
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_68supercontigscaffold_68:10592..11647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|570038gene_10923Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10923CDS_10923Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|570038mRNA_10923-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10923 ID=mRNA_10923|Name=jgi.p|Nanoce1779_2|570038|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
ATGGTACTACAAGACAACTCCCTTCTATCCGAGGTCTTATCTTTCCTCCT
CACCCAAGACAGCTCTGATCGCTTTACGCTGTCCAAATTCGGGTTAGTCT
CACGCCACTGGCACAAACTCACACTCCTTGACCGCTTCTGGAGTCCCATC
GCTCGAAGTTGCTTCCCTGTTCTGGCCCTCGAGGCCGCGCCGGGAGAGTC
CCGCCTGGTGCTAGTGGGCCAGGGGGCGGCGGGATGCCCTAGCAACATGC
ATGCAGCTGCCTTGAAGGCAGCGACGGTGTGTGGAGGGTATCGGAGCGAA
GAAAGTCTTTCGGCTTCGACGCCGCATAGGAATGTGGTCCTGGATTACGG
GCGTTGTTTGGTTGAGACGAGGTTGTGCAAGCTTGCGGATTGGAAAGAGG
GTTTACGCCTGTCTTTTGAAGTTTTCGATGCAGAGGATGGCCTGCGCTTG
TACAGCGCCGAGGGCCCGGTCAAGGTTACGCCCATCACAGATTCGAATGT
GACTTCTCTTCGCCTTTCCACCGGCAGTCGCCGGGAGGTGACCCACCCCT
TCTCAGCAGCCTCACGCGATGCCGTCGCTCAGCGCTTTGGCTCTGTCAGG
GACTATTTCCGCCACGGACATACAACTGAATACTCCTGCGCACTGACTGT
CCGCATCACGGCGTATGATGTGCGTACTGGCAGGGTAGCCTTAATCTACC
ACGCCTCCAAAGCGCCGAAATCTTCCGCCGGCGCCACGCCCTCAGCTTAT
TGGCAGAACTTCTTGCCACCTGGATCCTTGGACGTATGCGATGCTTGGAC
ATGGAACTCTGTCCATCATCCTTCTATGGGGTCGGCAAATGCAGGACCAG
CAATGGAAATGCGGGTGGGTTTCTTTGTCGGGCCAGAGCCGGGGCAGTTG
GATGGAGTGAGTGACAAGGATCGGCTGTATCGTGTGGTGGCGCGGGATTG
GCACCCCGAGGAGCCACAGCAAGATGCGTCGCTTATGTTTCTGTACTTCA
AGTCCTTGGACACCCTTGCCATTGGCAAGTTCGTTCGTGGACTCTTAGAT
CGGTAG
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protein sequence of jgi.p|Nanoce1779_2|570038

>mRNA_10923-protein ID=mRNA_10923-protein|Name=jgi.p|Nanoce1779_2|570038|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MVLQDNSLLSEVLSFLLTQDSSDRFTLSKFGLVSRHWHKLTLLDRFWSPI
ARSCFPVLALEAAPGESRLVLVGQGAAGCPSNMHAAALKAATVCGGYRSE
ESLSASTPHRNVVLDYGRCLVETRLCKLADWKEGLRLSFEVFDAEDGLRL
YSAEGPVKVTPITDSNVTSLRLSTGSRREVTHPFSAASRDAVAQRFGSVR
DYFRHGHTTEYSCALTVRITAYDVRTGRVALIYHASKAPKSSAGATPSAY
WQNFLPPGSLDVCDAWTWNSVHHPSMGSANAGPAMEMRVGFFVGPEPGQL
DGVSDKDRLYRVVARDWHPEEPQQDASLMFLYFKSLDTLAIGKFVRGLLD
R*
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mRNA from alignment at scaffold_68:10592..11647-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10923 ID=mRNA_10923|Name=jgi.p|Nanoce1779_2|570038|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp|location=Sequence derived from alignment at scaffold_68:10592..11647- (Nannochloropsis oceanica)
ATGGTACTACAAGACAACTCCCTTCTATCCGAGGTCTTATCTTTCCTCCT
CACCCAAGACAGCTCTGATCGCTTTACGCTGTCCAAATTCGGGTTAGTCT
CACGCCACTGGCACAAACTCACACTCCTTGACCGCTTCTGGAGTCCCATC
GCTCGAAGTTGCTTCCCTGTTCTGGCCCTCGAGGCCGCGCCGGGAGAGTC
CCGCCTGGTGCTAGTGGGCCAGGGGGCGGCGGGATGCCCTAGCAACATGC
ATGCAGCTGCCTTGAAGGCAGCGACGGTGTGTGGAGGGTATCGGAGCGAA
GAAAGTCTTTCGGCTTCGACGCCGCATAGGAATGTGGTCCTGGATTACGG
GCGTTGTTTGGTTGAGACGAGGTTGTGCAAGCTTGCGGATTGGAAAGAGG
GTTTACGCCTGTCTTTTGAAGTTTTCGATGCAGAGGATGGCCTGCGCTTG
TACAGCGCCGAGGGCCCGGTCAAGGTTACGCCCATCACAGATTCGAATGT
GACTTCTCTTCGCCTTTCCACCGGCAGTCGCCGGGAGGTGACCCACCCCT
TCTCAGCAGCCTCACGCGATGCCGTCGCTCAGCGCTTTGGCTCTGTCAGG
GACTATTTCCGCCACGGACATACAACTGAATACTCCTGCGCACTGACTGT
CCGCATCACGGCGTATGATGTGCGTACTGGCAGGGTAGCCTTAATCTACC
ACGCCTCCAAAGCGCCGAAATCTTCCGCCGGCGCCACGCCCTCAGCTTAT
TGGCAGAACTTCTTGCCACCTGGATCCTTGGACGTATGCGATGCTTGGAC
ATGGAACTCTGTCCATCATCCTTCTATGGGGTCGGCAAATGCAGGACCAG
CAATGGAAATGCGGGTGGGTTTCTTTGTCGGGCCAGAGCCGGGGCAGTTG
GATGGAGTGAGTGACAAGGATCGGCTGTATCGTGTGGTGGCGCGGGATTG
GCACCCCGAGGAGCCACAGCAAGATGCGTCGCTTATGTTTCTGTACTTCA
AGTCCTTGGACACCCTTGCCATTGGCAAGTTCGTTCGTGGACTCTTAGAT
CGGTAG
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Coding sequence (CDS) from alignment at scaffold_68:10592..11647-

>mRNA_10923 ID=mRNA_10923|Name=jgi.p|Nanoce1779_2|570038|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at scaffold_68:10592..11647- (Nannochloropsis oceanica)
ATGGTACTACAAGACAACTCCCTTCTATCCGAGGTCTTATCTTTCCTCCT
CACCCAAGACAGCTCTGATCGCTTTACGCTGTCCAAATTCGGGTTAGTCT
CACGCCACTGGCACAAACTCACACTCCTTGACCGCTTCTGGAGTCCCATC
GCTCGAAGTTGCTTCCCTGTTCTGGCCCTCGAGGCCGCGCCGGGAGAGTC
CCGCCTGGTGCTAGTGGGCCAGGGGGCGGCGGGATGCCCTAGCAACATGC
ATGCAGCTGCCTTGAAGGCAGCGACGGTGTGTGGAGGGTATCGGAGCGAA
GAAAGTCTTTCGGCTTCGACGCCGCATAGGAATGTGGTCCTGGATTACGG
GCGTTGTTTGGTTGAGACGAGGTTGTGCAAGCTTGCGGATTGGAAAGAGG
GTTTACGCCTGTCTTTTGAAGTTTTCGATGCAGAGGATGGCCTGCGCTTG
TACAGCGCCGAGGGCCCGGTCAAGGTTACGCCCATCACAGATTCGAATGT
GACTTCTCTTCGCCTTTCCACCGGCAGTCGCCGGGAGGTGACCCACCCCT
TCTCAGCAGCCTCACGCGATGCCGTCGCTCAGCGCTTTGGCTCTGTCAGG
GACTATTTCCGCCACGGACATACAACTGAATACTCCTGCGCACTGACTGT
CCGCATCACGGCGTATGATGTGCGTACTGGCAGGGTAGCCTTAATCTACC
ACGCCTCCAAAGCGCCGAAATCTTCCGCCGGCGCCACGCCCTCAGCTTAT
TGGCAGAACTTCTTGCCACCTGGATCCTTGGACGTATGCGATGCTTGGAC
ATGGAACTCTGTCCATCATCCTTCTATGGGGTCGGCAAATGCAGGACCAG
CAATGGAAATGCGGGTGGGTTTCTTTGTCGGGCCAGAGCCGGGGCAGTTG
GATGGAGTGAGTGACAAGGATCGGCTGTATCGTGTGGTGGCGCGGGATTG
GCACCCCGAGGAGCCACAGCAAGATGCGTCGCTTATGTTTCTGTACTTCA
AGTCCTTGGACACCCTTGCCATTGGCAAGTTCGTTCGTGGACTCTTAGAT
CGGTAG
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Synonyms
Publications