jgi.p|Nanoce1779_2|612789, mRNA_10922 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612789
Unique Name	mRNA_10922
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2050
Alignment location	scaffold_68:8166..10215 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612875
Track	FilteredModels2
ProteinId	612789

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_68	supercontig	scaffold_68:8166..10215 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612789	gene_10922	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612789	mRNA_10922-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10922	CDS_10922	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_68:8166..10215+
coding sequence from alignment at scaffold_68:8166..10215+

mRNA sequence

>mRNA_10922 ID=mRNA_10922|Name=jgi.p|Nanoce1779_2|612789|organism=Nannochloropsis oceanica|type=mRNA|length=2050bp
TTTAGACTTGACTTGAGCCGTTGGAACAATCCTTCTTTCCGTCTGCCCAC
TCGACAATGCCATTCCCGTAACAACACATTTGTGCTTGCCAAGTACTCAT
GTACCACAGTAGTATGAGCCTCTTTTCATCAGCGTTTCAATCATCTGCTG
GCGTCGTGGTTGATTGTCTATTACCCTCACGCTTCTCGCATCGGGGGATA
TCAACGCCACCCACGCACGATCACTCGCTGCATTCCATCTCACGCCCTCA
ATTCATCATATATGCAGCACACAGTAGGTACGATGCCCAGCCCTCCGTCT
CTCGTGCCCACGGCTGTGGAGTTGCTACGCTTGGCTCATGGGACGCTTCT
TCGGCCGCAGCAGCAAGAACAAGGACAGCCACAAGCAGAGGCCGTGGCGG
CCTTGCGTGCCCACCTTGCCGAGGACGACACCGCGAGCATGAAGACAGAC
CTAAAAGCATTGACACGATTGCTAGGTCAAGCTACGATGGACGGGGAAGA
AGAGTCTGAGGAGGACAATGCGACGACAACCGCCACCACTTCCACGTCCG
CCGCGATGCGGTTAGCCACCGCGTTCTCAGAAACGCTAAACTTGACGGGT
GGAAGGAGGAAGCTATCAAAGTCTCTTACGTTTTCATCTCTACAGCCTTC
TGCCAAGGACGATAAGCAAGTGCATGCCTCCGCCATGCATGGCGCGGGCG
TTGTCAGCCCGTTCATGTCTCCTAGCTACTGGGCCTCGCCCTCCAACCCC
TTGACGACGCCGTCCTTGCTCAACGAGATTTTTGATTACGTGGGCTTGAT
AGCCTCACCTCCTTCCATTTCTCTGTCCATATCCCCTGCGAACTCTATTT
CTTTGTCTTCTTTCCATTCTTCTTCTTCCTCTTCTTCAGCAGCAGCAACA
GCTGTACCAGCAGCAGCCGCAGGAATGACGCCCGATATGGCCGCTGTTGT
GGCTGCCCGCACAAATCTTGGGCACCTAGCATGTGTCTGCCGCCTTTGGA
AAGTAACTGCATCGGAGGACCGGTACTGGCGGCCACTCTCCACGGCATTT
CTGCCCATGTTGGGGACGGCCCCCACAACCACCCACATGCCGCCGGCTAC
CAGCACCCCTTCCTCCCCTTCCCAGCTACAATCGCAATCGCCCTGTCGCG
ACGCCTTAGTTCAATATGGTAAATGCCTGGCCATGCCTACCGTGCGCGAT
GGAGACGACTGGCAGGCCCACTTGCTCCTATCTTTCGAGATCCTGGACGA
GCGAGACTCCCTACGTTTATTTTCGGCTTCGGGGCCCGTGGACCTTATTC
TATCCTCCGAATCGGGCTTGACAGCTCTACGCCTTACTGGTACCAAGCGC
ACTGAGGTGTGTTGTCCCTTCTCGGCTGCCTCGCGAGACCCTGAGAAGCG
CCGCTTCAAGAACATCAAGGACTTTTTCGCCAATGGCTCCCAGCCTCAGT
TCCCCGCGGCGTTGCGTGTGAGGGTAATGGGCAAAGACACACGCACGGGG
AAGCAAGCCTTACTTTACACCTCGCATCCAGGCACACAACGCTCTGTGAA
AGTTTCGACTTTGCAGTATTGGCAACAATTTTTGGCGGCAGATAGCTTAT
TTGTGTGGGAGCCTTGGTCACGGTGGAGCACCGGGGATGTGACGCAAACC
AATGAGGTGGTGGAAATTAGCGCATCTTTCTACGTTTCACCGGTGAAAAT
CGTGAGTCATGATGATAGGATGGGAGAGGATGTAGCTGGAGGGATGGATG
ACGCAGCGGAGGCTGTACAGGACGGGGACCCTGATCCTCCACAAAACGCA
AGTGCACTGTCCAGGGAGCGCGCGCGTGAGCAATTGCATGTGATTATGGG
TGGAGATGAGGGTGCGTACTCGTCACACAATTCATTTGTAGCCTTGCAAT
TCCGTACACTGGACGCTTCTATCCCTGCGCGGTTTATTAAGGCGGCTTTG
GCTGCGGCAGATTCCACGACTCCATGAGAGGAAAGCAAACCAGGCAGTGA
CAACATACATAATTGTGCATTTTGAAAGAAATAATTATATTGAAAGCTGA

protein sequence of jgi.p|Nanoce1779_2|612789

>mRNA_10922-protein ID=mRNA_10922-protein|Name=jgi.p|Nanoce1779_2|612789|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MQHTVGTMPSPPSLVPTAVELLRLAHGTLLRPQQQEQGQPQAEAVAALRA
HLAEDDTASMKTDLKALTRLLGQATMDGEEESEEDNATTTATTSTSAAMR
LATAFSETLNLTGGRRKLSKSLTFSSLQPSAKDDKQVHASAMHGAGVVSP
FMSPSYWASPSNPLTTPSLLNEIFDYVGLIASPPSISLSISPANSISLSS
FHSSSSSSSAAATAVPAAAAGMTPDMAAVVAARTNLGHLACVCRLWKVTA
SEDRYWRPLSTAFLPMLGTAPTTTHMPPATSTPSSPSQLQSQSPCRDALV
QYGKCLAMPTVRDGDDWQAHLLLSFEILDERDSLRLFSASGPVDLILSSE
SGLTALRLTGTKRTEVCCPFSAASRDPEKRRFKNIKDFFANGSQPQFPAA
LRVRVMGKDTRTGKQALLYTSHPGTQRSVKVSTLQYWQQFLAADSLFVWE
PWSRWSTGDVTQTNEVVEISASFYVSPVKIVSHDDRMGEDVAGGMDDAAE
AVQDGDPDPPQNASALSRERAREQLHVIMGGDEGAYSSHNSFVALQFRTL
DASIPARFIKAALAAADSTTP*

mRNA from alignment at scaffold_68:8166..10215+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10922 ID=mRNA_10922|Name=jgi.p|Nanoce1779_2|612789|organism=Nannochloropsis oceanica|type=mRNA|length=2050bp|location=Sequence derived from alignment at scaffold_68:8166..10215+ (Nannochloropsis oceanica)
TTTAGACTTGACTTGAGCCGTTGGAACAATCCTTCTTTCCGTCTGCCCAC
TCGACAATGCCATTCCCGTAACAACACATTTGTGCTTGCCAAGTACTCAT
GTACCACAGTAGTATGAGCCTCTTTTCATCAGCGTTTCAATCATCTGCTG
GCGTCGTGGTTGATTGTCTATTACCCTCACGCTTCTCGCATCGGGGGATA
TCAACGCCACCCACGCACGATCACTCGCTGCATTCCATCTCACGCCCTCA
ATTCATCATATATGCAGCACACAGTAGGTACGATGCCCAGCCCTCCGTCT
CTCGTGCCCACGGCTGTGGAGTTGCTACGCTTGGCTCATGGGACGCTTCT
TCGGCCGCAGCAGCAAGAACAAGGACAGCCACAAGCAGAGGCCGTGGCGG
CCTTGCGTGCCCACCTTGCCGAGGACGACACCGCGAGCATGAAGACAGAC
CTAAAAGCATTGACACGATTGCTAGGTCAAGCTACGATGGACGGGGAAGA
AGAGTCTGAGGAGGACAATGCGACGACAACCGCCACCACTTCCACGTCCG
CCGCGATGCGGTTAGCCACCGCGTTCTCAGAAACGCTAAACTTGACGGGT
GGAAGGAGGAAGCTATCAAAGTCTCTTACGTTTTCATCTCTACAGCCTTC
TGCCAAGGACGATAAGCAAGTGCATGCCTCCGCCATGCATGGCGCGGGCG
TTGTCAGCCCGTTCATGTCTCCTAGCTACTGGGCCTCGCCCTCCAACCCC
TTGACGACGCCGTCCTTGCTCAACGAGATTTTTGATTACGTGGGCTTGAT
AGCCTCACCTCCTTCCATTTCTCTGTCCATATCCCCTGCGAACTCTATTT
CTTTGTCTTCTTTCCATTCTTCTTCTTCCTCTTCTTCAGCAGCAGCAACA
GCTGTACCAGCAGCAGCCGCAGGAATGACGCCCGATATGGCCGCTGTTGT
GGCTGCCCGCACAAATCTTGGGCACCTAGCATGTGTCTGCCGCCTTTGGA
AAGTAACTGCATCGGAGGACCGGTACTGGCGGCCACTCTCCACGGCATTT
CTGCCCATGTTGGGGACGGCCCCCACAACCACCCACATGCCGCCGGCTAC
CAGCACCCCTTCCTCCCCTTCCCAGCTACAATCGCAATCGCCCTGTCGCG
ACGCCTTAGTTCAATATGGTAAATGCCTGGCCATGCCTACCGTGCGCGAT
GGAGACGACTGGCAGGCCCACTTGCTCCTATCTTTCGAGATCCTGGACGA
GCGAGACTCCCTACGTTTATTTTCGGCTTCGGGGCCCGTGGACCTTATTC
TATCCTCCGAATCGGGCTTGACAGCTCTACGCCTTACTGGTACCAAGCGC
ACTGAGGTGTGTTGTCCCTTCTCGGCTGCCTCGCGAGACCCTGAGAAGCG
CCGCTTCAAGAACATCAAGGACTTTTTCGCCAATGGCTCCCAGCCTCAGT
TCCCCGCGGCGTTGCGTGTGAGGGTAATGGGCAAAGACACACGCACGGGG
AAGCAAGCCTTACTTTACACCTCGCATCCAGGCACACAACGCTCTGTGAA
AGTTTCGACTTTGCAGTATTGGCAACAATTTTTGGCGGCAGATAGCTTAT
TTGTGTGGGAGCCTTGGTCACGGTGGAGCACCGGGGATGTGACGCAAACC
AATGAGGTGGTGGAAATTAGCGCATCTTTCTACGTTTCACCGGTGAAAAT
CGTGAGTCATGATGATAGGATGGGAGAGGATGTAGCTGGAGGGATGGATG
ACGCAGCGGAGGCTGTACAGGACGGGGACCCTGATCCTCCACAAAACGCA
AGTGCACTGTCCAGGGAGCGCGCGCGTGAGCAATTGCATGTGATTATGGG
TGGAGATGAGGGTGCGTACTCGTCACACAATTCATTTGTAGCCTTGCAAT
TCCGTACACTGGACGCTTCTATCCCTGCGCGGTTTATTAAGGCGGCTTTG
GCTGCGGCAGATTCCACGACTCCATGAGAGGAAAGCAAACCAGGCAGTGA
CAACATACATAATTGTGCATTTTGAAAGAAATAATTATATTGAAAGCTGA

Coding sequence (CDS) from alignment at scaffold_68:8166..10215+

>mRNA_10922 ID=mRNA_10922|Name=jgi.p|Nanoce1779_2|612789|organism=Nannochloropsis oceanica|type=CDS|length=1716bp|location=Sequence derived from alignment at scaffold_68:8166..10215+ (Nannochloropsis oceanica)
ATGCAGCACACAGTAGGTACGATGCCCAGCCCTCCGTCTCTCGTGCCCAC
GGCTGTGGAGTTGCTACGCTTGGCTCATGGGACGCTTCTTCGGCCGCAGC
AGCAAGAACAAGGACAGCCACAAGCAGAGGCCGTGGCGGCCTTGCGTGCC
CACCTTGCCGAGGACGACACCGCGAGCATGAAGACAGACCTAAAAGCATT
GACACGATTGCTAGGTCAAGCTACGATGGACGGGGAAGAAGAGTCTGAGG
AGGACAATGCGACGACAACCGCCACCACTTCCACGTCCGCCGCGATGCGG
TTAGCCACCGCGTTCTCAGAAACGCTAAACTTGACGGGTGGAAGGAGGAA
GCTATCAAAGTCTCTTACGTTTTCATCTCTACAGCCTTCTGCCAAGGACG
ATAAGCAAGTGCATGCCTCCGCCATGCATGGCGCGGGCGTTGTCAGCCCG
TTCATGTCTCCTAGCTACTGGGCCTCGCCCTCCAACCCCTTGACGACGCC
GTCCTTGCTCAACGAGATTTTTGATTACGTGGGCTTGATAGCCTCACCTC
CTTCCATTTCTCTGTCCATATCCCCTGCGAACTCTATTTCTTTGTCTTCT
TTCCATTCTTCTTCTTCCTCTTCTTCAGCAGCAGCAACAGCTGTACCAGC
AGCAGCCGCAGGAATGACGCCCGATATGGCCGCTGTTGTGGCTGCCCGCA
CAAATCTTGGGCACCTAGCATGTGTCTGCCGCCTTTGGAAAGTAACTGCA
TCGGAGGACCGGTACTGGCGGCCACTCTCCACGGCATTTCTGCCCATGTT
GGGGACGGCCCCCACAACCACCCACATGCCGCCGGCTACCAGCACCCCTT
CCTCCCCTTCCCAGCTACAATCGCAATCGCCCTGTCGCGACGCCTTAGTT
CAATATGGTAAATGCCTGGCCATGCCTACCGTGCGCGATGGAGACGACTG
GCAGGCCCACTTGCTCCTATCTTTCGAGATCCTGGACGAGCGAGACTCCC
TACGTTTATTTTCGGCTTCGGGGCCCGTGGACCTTATTCTATCCTCCGAA
TCGGGCTTGACAGCTCTACGCCTTACTGGTACCAAGCGCACTGAGGTGTG
TTGTCCCTTCTCGGCTGCCTCGCGAGACCCTGAGAAGCGCCGCTTCAAGA
ACATCAAGGACTTTTTCGCCAATGGCTCCCAGCCTCAGTTCCCCGCGGCG
TTGCGTGTGAGGGTAATGGGCAAAGACACACGCACGGGGAAGCAAGCCTT
ACTTTACACCTCGCATCCAGGCACACAACGCTCTGTGAAAGTTTCGACTT
TGCAGTATTGGCAACAATTTTTGGCGGCAGATAGCTTATTTGTGTGGGAG
CCTTGGTCACGGTGGAGCACCGGGGATGTGACGCAAACCAATGAGGTGGT
GGAAATTAGCGCATCTTTCTACGTTTCACCGGTGAAAATCGTGAGTCATG
ATGATAGGATGGGAGAGGATGTAGCTGGAGGGATGGATGACGCAGCGGAG
GCTGTACAGGACGGGGACCCTGATCCTCCACAAAACGCAAGTGCACTGTC
CAGGGAGCGCGCGCGTGAGCAATTGCATGTGATTATGGGTGGAGATGAGG
GTGCGTACTCGTCACACAATTCATTTGTAGCCTTGCAATTCCGTACACTG
GACGCTTCTATCCCTGCGCGGTTTATTAAGGCGGCTTTGGCTGCGGCAGA
TTCCACGACTCCATGA

Synonyms

Publications