jgi.p|Nanoce1779_2|522554, mRNA_1092 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|522554
Unique Name	mRNA_1092
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1089
Alignment location	scaffold_2:1200340..1201500 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	522640
Track	FilteredModels2
ProteinId	522554

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1200340..1201500 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|522554	gene_1092	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|522554	mRNA_1092-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1092	CDS_1092	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1200340..1201500+
coding sequence from alignment at scaffold_2:1200340..1201500+

mRNA sequence

>mRNA_1092 ID=mRNA_1092|Name=jgi.p|Nanoce1779_2|522554|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp
ATGAACAAGGAGCAAAGCCAGCAACAAGATAAGCAACAGAATGAGTCTGA
GGGCACGGCAGCAGCATCTCAGTCAAAAAGTCGCTCAAAGGCTTTGATTA
AATCCTTTTCCGGCGTGGAAGTAAAACCTCATCCGCCGCCAAGGACGATA
CCGACGGCTAGTAAGCCGAAAGAAGGGACGTCGATGGTGCAAGGTTTGAT
ACAGGCCTTGTCGGGGGCCATGGTATATACGGACGTGGGTAATCTCGAGA
CCAATCGGCGCCTTTGGAATCGGTACGCGGAGGAATGGCATGAGGGCGAC
AAGGCAAGCAGATGCAATACCACCAGCAGTACATGGGTCCAGGAAATGGC
AGCACACACATCCAAGACAAGCAAAAAAATGCCACACGACACCCCACAAC
ATATCACAGTCGTAGGTGAAGAATGGAGCAGCCAGGAGGACCTAGAAGAG
GTTCTACATGAGTTTCTCTTGCCGTACTTGACGCCGGAAGGTGTGGTGGC
CGAGGTGGGGGTAGGTGGTGGTCGGGTCGCGATGCATGTCATGGGGAAAT
GTTCCAGTCTGACGTGTCTGGATATTTCGGTAGGGATGCTTGCTAAGGCT
AAGGCTGCCTTACTTGCCCATCCGGCGGCCAATACTGTCACCAAGCTGGA
TTTTGTGTTCAGCGTTCAAATTGAATATCCCACGCACCTTCATTCCACCT
TTGACTTCCTATATTCATTCGATTGTCTAGTGCACGTCGATCTTCACACA
CTCTACCAAACGCTTCATCAAATTCGCATGATCCTCAAACCTGGAGGAAA
GGCCTTCCTCTCCACTGCCAACCTCCTCACCCCCGCCGGCTTCCGTCGTT
TTGCCGCTCAAGTAAAGTATACCGTCGGTGGTTTTTATTTCCTCTCTCCT
GATATTGTTACCCTCCTGTTGAAAAAGGCAGGGTTGAAGGTACTCAAGAC
GAGTGAGGTCCCTGAAGGGTTCAAGGAGTTTAGTGATGACAAGGGGCCAG
CGAAAGGCAACTTGTACTATGGACGGGATTTCCTGGTGGTAGTTGAGAGG
ATGGAGAGGCAAGGAGGAGGAAGGGGAGGGGAGAGATGA

protein sequence of jgi.p|Nanoce1779_2|522554

>mRNA_1092-protein ID=mRNA_1092-protein|Name=jgi.p|Nanoce1779_2|522554|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MNKEQSQQQDKQQNESEGTAAASQSKSRSKALIKSFSGVEVKPHPPPRTI
PTASKPKEGTSMVQGLIQALSGAMVYTDVGNLETNRRLWNRYAEEWHEGD
KASRCNTTSSTWVQEMAAHTSKTSKKMPHDTPQHITVVGEEWSSQEDLEE
VLHEFLLPYLTPEGVVAEVGVGGGRVAMHVMGKCSSLTCLDISVGMLAKA
KAALLAHPAANTVTKLDFVFSVQIEYPTHLHSTFDFLYSFDCLVHVDLHT
LYQTLHQIRMILKPGGKAFLSTANLLTPAGFRRFAAQVKYTVGGFYFLSP
DIVTLLLKKAGLKVLKTSEVPEGFKEFSDDKGPAKGNLYYGRDFLVVVER
MERQGGGRGGER*

mRNA from alignment at scaffold_2:1200340..1201500+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1092 ID=mRNA_1092|Name=jgi.p|Nanoce1779_2|522554|organism=Nannochloropsis oceanica|type=mRNA|length=1161bp|location=Sequence derived from alignment at scaffold_2:1200340..1201500+ (Nannochloropsis oceanica)
ATGAACAAGGAGCAAAGCCAGCAACAAGATAAGCAACAGAATGAGTCTGA
GGGCACGGCAGCAGCATCTCAGTCAAAAAGTCGCTCAAAGGCTTTGATTA
AATCCTTTTCCGGCGTGGAAGTAAAACCTCATCCGCCGCCAAGGACGATA
CCGACGGCTAGTAAGCCGAAAGAAGGGACGTCGATGGTGCAAGGTTTGAT
ACAGGCCTTGTCGGGGGCCATGGTATATACGGACGTGGGTAATCTCGAGA
CCAATCGGCGCCTTTGGAATCGGTACGCGGAGGAATGGCATGAGGGCGAC
AAGGCAAGCAGATGCAATACCACCAGCAGTACATGGGTCCAGGAAATGGC
AGCACACACATCCAAGACAAGCAAAAAAATGCCACACGACACCCCACAAC
ATATCACAGTCGTAGGTGAAGAATGGAGCAGCCAGGAGGACCTAGAAGAG
GTTCTACATGAGTTTCTCTTGCCGTACTTGACGCCGGAAGGTGTGGTGGC
CGAGGTGGGGGTAGGTGGTGGTCGGGTCGCGATGCATGTCATGGGGAAAT
GTTCCAGTCTGACGTGTCTGGATATTTCGGTAGGGATGCTTGCTAAGGCT
AAGGCTGCCTTACTTGCCCATCCGGCGGCCAATACTGTCACCAAGCTGGA
TTTTGTGTTGTTGGGCGATAGTTCCGCCGCCGCCTCCTCCTCCTCCTCCT
CCTCCACCACCACCACCACCACCACCGGCAGCAGCGTTCAAATTGAATAT
CCCACGCACCTTCATTCCACCTTTGACTTCCTATATTCATTCGATTGTCT
AGTGCACGTCGATCTTCACACACTCTACCAAACGCTTCATCAAATTCGCA
TGATCCTCAAACCTGGAGGAAAGGCCTTCCTCTCCACTGCCAACCTCCTC
ACCCCCGCCGGCTTCCGTCGTTTTGCCGCTCAAGTAAAGTATACCGTCGG
TGGTTTTTATTTCCTCTCTCCTGATATTGTTACCCTCCTGTTGAAAAAGG
CAGGGTTGAAGGTACTCAAGACGAGTGAGGTCCCTGAAGGGTTCAAGGAG
TTTAGTGATGACAAGGGGCCAGCGAAAGGCAACTTGTACTATGGACGGGA
TTTCCTGGTGGTAGTTGAGAGGATGGAGAGGCAAGGAGGAGGAAGGGGAG
GGGAGAGATGA

Coding sequence (CDS) from alignment at scaffold_2:1200340..1201500+

>mRNA_1092 ID=mRNA_1092|Name=jgi.p|Nanoce1779_2|522554|organism=Nannochloropsis oceanica|type=CDS|length=2178bp|location=Sequence derived from alignment at scaffold_2:1200340..1201500+ (Nannochloropsis oceanica)
ATGAACAAGGAGCAAAGCCAGCAACAAGATAAGCAACAGAATGAGTCTGA
GGGCACGGCAGCAGCATCTCAGTCAAAAAGTCGCTCAAAGGCTTTGATTA
AATCCTTTTCCGGCGTGGAAGTAAAACCTCATCCGCCGCCAAGGACGATA
CCGACGGCTAGTAAGCCGAAAGAAGGGACGTCGATGGTGCAAGGTTTGAT
ACAGGCCTTGTCGGGGGCCATGGTATATACGGACGTGGGTAATCTCGAGA
CCAATCGGCGCCTTTGGAATCGGTACGCGGAGGAATGGCATGAGGGCGAC
AAGGCAAGCAGATGCAATACCACCAGCAGTACATGGGTCCAGGAAATGGC
AGCACACACATCCAAGACAAGCAAAAAAATGCCACACGACACCCCACAAC
ATATCACAGTCGTAGGTGAAGAATGGAGCAGCCAGGAGGACCTAGAAGAG
GTTCTACATGAGTTTCTCTTGCCGTACTTGACGCCGGAAGGTGTGGTGGC
CGAGGTGGGGGTAGGTGGTGGTCGGGTCGCGATGCATGTCATGGGGAAAT
GTTCCAGTCTGACGTGTCTGGATATTTCGGTAGGGATGCTTGCTAAGGCT
AAGGCTGCCTTACTTGCCCATCCGGCGGCCAATACTGTCACCAAGCTGGA
TTTTGTGTTCAGCGTTCAAATTGAATATCCCACGCACCTTCATTCCACCT
TTGACTTCCTATATTCATTCGATTGTCTAGTGCACGTCGATCTTCACACA
CTCTACCAAACGCTTCATCAAATTCGCATGATCCTCAAACCTGGAGGAAA
GGCCTTCCTCTCCACTGCCAACCTCCTCACCCCCGCCGGCTTCCGTCGTT
TTGCCGCTCAAGTAAAGTATACCGTCGGTGGTTTTTATTTCCTCTCTCCT
GATATTGTTACCCTCCTGTTGAAAAAGGCAGGGTTGAAGGTACTCAAGAC
GAGTGAGGTCCCTGAAGGGTTCAAGGAGTTTAGTGATGACAAGGGGCCAG
CGAAAGGCAACTTGTACTATGGACGGGATTTCCTGGTGGTAGTTGAGAGG
ATGGAGAGGCAAGGAGGAGGAAGGGGAGGGGAGAGATGAATGAACAAGGA
GCAAAGCCAGCAACAAGATAAGCAACAGAATGAGTCTGAGGGCACGGCAG
CAGCATCTCAGTCAAAAAGTCGCTCAAAGGCTTTGATTAAATCCTTTTCC
GGCGTGGAAGTAAAACCTCATCCGCCGCCAAGGACGATACCGACGGCTAG
TAAGCCGAAAGAAGGGACGTCGATGGTGCAAGGTTTGATACAGGCCTTGT
CGGGGGCCATGGTATATACGGACGTGGGTAATCTCGAGACCAATCGGCGC
CTTTGGAATCGGTACGCGGAGGAATGGCATGAGGGCGACAAGGCAAGCAG
ATGCAATACCACCAGCAGTACATGGGTCCAGGAAATGGCAGCACACACAT
CCAAGACAAGCAAAAAAATGCCACACGACACCCCACAACATATCACAGTC
GTAGGTGAAGAATGGAGCAGCCAGGAGGACCTAGAAGAGGTTCTACATGA
GTTTCTCTTGCCGTACTTGACGCCGGAAGGTGTGGTGGCCGAGGTGGGGG
TAGGTGGTGGTCGGGTCGCGATGCATGTCATGGGGAAATGTTCCAGTCTG
ACGTGTCTGGATATTTCGGTAGGGATGCTTGCTAAGGCTAAGGCTGCCTT
ACTTGCCCATCCGGCGGCCAATACTGTCACCAAGCTGGATTTTGTGTTCA
GCGTTCAAATTGAATATCCCACGCACCTTCATTCCACCTTTGACTTCCTA
TATTCATTCGATTGTCTAGTGCACGTCGATCTTCACACACTCTACCAAAC
GCTTCATCAAATTCGCATGATCCTCAAACCTGGAGGAAAGGCCTTCCTCT
CCACTGCCAACCTCCTCACCCCCGCCGGCTTCCGTCGTTTTGCCGCTCAA
GTAAAGTATACCGTCGGTGGTTTTTATTTCCTCTCTCCTGATATTGTTAC
CCTCCTGTTGAAAAAGGCAGGGTTGAAGGTACTCAAGACGAGTGAGGTCC
CTGAAGGGTTCAAGGAGTTTAGTGATGACAAGGGGCCAGCGAAAGGCAAC
TTGTACTATGGACGGGATTTCCTGGTGGTAGTTGAGAGGATGGAGAGGCA
AGGAGGAGGAAGGGGAGGGGAGAGATGA

Synonyms

Publications