jgi.p|Nanoce1779_2|575284, mRNA_1091 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575284
Unique Name	mRNA_1091
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	922
Alignment location	scaffold_2:1199087..1200008 -

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Properties


Property Name	Value
TranscriptId	575370
Track	FilteredModels2
ProteinId	575284

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1199087..1200008 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575284	gene_1091	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575284	mRNA_1091-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1091	CDS_1091	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1199087..1200008-
coding sequence from alignment at scaffold_2:1199087..1200008-

mRNA sequence

>mRNA_1091 ID=mRNA_1091|Name=jgi.p|Nanoce1779_2|575284|organism=Nannochloropsis oceanica|type=mRNA|length=922bp
ACAGGCTCGATCCATTTATCGGAAGATCCTGTTTCCGCATTGTCTGGCCC
CCGTTCCGGCGTCCACAAGCCTCGCTGAGCTTGACCTTGCCCTAACTGCA
CGACGCCGGCACGTTGTCCTCGTCTAGACGTTCTCCTCTTTCATCTCAAC
ACCCGACCATGGCACAAGACACGCCCCCCAGAAGCAGCATTGCTCTGCGG
AGAGAGCAGTCTTATGAGGAGGCAAGCGTCTGGGAGCCGCGCGTATCTCC
CACAGGGCGGATTTTCGTGGGGAACTCCCTCGTCAACAACGAGAGCAGCG
AGGGGAGCAGCAACGAGAGCACTCCGCGGAGCAGGGACAGCCAGGATCAG
GATCAGGACATGAGCTTTGGACGCTTTAGGAGCGGAGAAAGGCAGGCGCG
GAGTCGAGGACATGGATCAGGACGGGGCATAGGGAGTGTGTACATTGCAG
GAACGACGGATGGCACGGATGGGGGAGAGGTGGTGTTTGCCCTAGCACGG
GGGGTGGCAACGGTGGTAACGCTATCGGCCTTGGCGCTTGTGATGGTGTT
GTTGATCATTGCGGAGGCGGTGCTGATGGTAGTGGCAGAGAAGCTTGGCT
TGGCTCCGGTGGTGGTGATGGTACTGGCGATAATGTTTGTGGTGGGACGG
CAGATGGGGGTGCCATTTCAGTCGTTGGCAAGGGTGTTGGTGTTTTTGTG
GGCATTTTGAGAGGATGTCCGAGGGAGTCGATCGACAGGGAAAGTAGAGA
GAGGGCAAAAGGGAGACCGTGCTGTGTGATCGTCTGTGCTGCGTTGTTTG
TAGAGGCAAGAAAAGTATGTACAGAGTGAATGCCCAGCGAGGGTGGGAAG
AGAAAGGGTTGAATGTCCCGAATCAAAGTAACAAGTAATTTGAAGAATTT
AAAAATGATAACCACATCAGCG

protein sequence of jgi.p|Nanoce1779_2|575284

>mRNA_1091-protein ID=mRNA_1091-protein|Name=jgi.p|Nanoce1779_2|575284|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MAQDTPPRSSIALRREQSYEEASVWEPRVSPTGRIFVGNSLVNNESSEGS
SNESTPRSRDSQDQDQDMSFGRFRSGERQARSRGHGSGRGIGSVYIAGTT
DGTDGGEVVFALARGVATVVTLSALALVMVLLIIAEAVLMVVAEKLGLAP
VVVMVLAIMFVVGRQMGVPFQSLARVLVFLWAF*

mRNA from alignment at scaffold_2:1199087..1200008-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1091 ID=mRNA_1091|Name=jgi.p|Nanoce1779_2|575284|organism=Nannochloropsis oceanica|type=mRNA|length=922bp|location=Sequence derived from alignment at scaffold_2:1199087..1200008- (Nannochloropsis oceanica)
ACAGGCTCGATCCATTTATCGGAAGATCCTGTTTCCGCATTGTCTGGCCC
CCGTTCCGGCGTCCACAAGCCTCGCTGAGCTTGACCTTGCCCTAACTGCA
CGACGCCGGCACGTTGTCCTCGTCTAGACGTTCTCCTCTTTCATCTCAAC
ACCCGACCATGGCACAAGACACGCCCCCCAGAAGCAGCATTGCTCTGCGG
AGAGAGCAGTCTTATGAGGAGGCAAGCGTCTGGGAGCCGCGCGTATCTCC
CACAGGGCGGATTTTCGTGGGGAACTCCCTCGTCAACAACGAGAGCAGCG
AGGGGAGCAGCAACGAGAGCACTCCGCGGAGCAGGGACAGCCAGGATCAG
GATCAGGACATGAGCTTTGGACGCTTTAGGAGCGGAGAAAGGCAGGCGCG
GAGTCGAGGACATGGATCAGGACGGGGCATAGGGAGTGTGTACATTGCAG
GAACGACGGATGGCACGGATGGGGGAGAGGTGGTGTTTGCCCTAGCACGG
GGGGTGGCAACGGTGGTAACGCTATCGGCCTTGGCGCTTGTGATGGTGTT
GTTGATCATTGCGGAGGCGGTGCTGATGGTAGTGGCAGAGAAGCTTGGCT
TGGCTCCGGTGGTGGTGATGGTACTGGCGATAATGTTTGTGGTGGGACGG
CAGATGGGGGTGCCATTTCAGTCGTTGGCAAGGGTGTTGGTGTTTTTGTG
GGCATTTTGAGAGGATGTCCGAGGGAGTCGATCGACAGGGAAAGTAGAGA
GAGGGCAAAAGGGAGACCGTGCTGTGTGATCGTCTGTGCTGCGTTGTTTG
TAGAGGCAAGAAAAGTATGTACAGAGTGAATGCCCAGCGAGGGTGGGAAG
AGAAAGGGTTGAATGTCCCGAATCAAAGTAACAAGTAATTTGAAGAATTT
AAAAATGATAACCACATCAGCG

Coding sequence (CDS) from alignment at scaffold_2:1199087..1200008-

>mRNA_1091 ID=mRNA_1091|Name=jgi.p|Nanoce1779_2|575284|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_2:1199087..1200008- (Nannochloropsis oceanica)
ATGGCACAAGACACGCCCCCCAGAAGCAGCATTGCTCTGCGGAGAGAGCA
GTCTTATGAGGAGGCAAGCGTCTGGGAGCCGCGCGTATCTCCCACAGGGC
GGATTTTCGTGGGGAACTCCCTCGTCAACAACGAGAGCAGCGAGGGGAGC
AGCAACGAGAGCACTCCGCGGAGCAGGGACAGCCAGGATCAGGATCAGGA
CATGAGCTTTGGACGCTTTAGGAGCGGAGAAAGGCAGGCGCGGAGTCGAG
GACATGGATCAGGACGGGGCATAGGGAGTGTGTACATTGCAGGAACGACG
GATGGCACGGATGGGGGAGAGGTGGTGTTTGCCCTAGCACGGGGGGTGGC
AACGGTGGTAACGCTATCGGCCTTGGCGCTTGTGATGGTGTTGTTGATCA
TTGCGGAGGCGGTGCTGATGGTAGTGGCAGAGAAGCTTGGCTTGGCTCCG
GTGGTGGTGATGGTACTGGCGATAATGTTTGTGGTGGGACGGCAGATGGG
GGTGCCATTTCAGTCGTTGGCAAGGGTGTTGGTGTTTTTGTGGGCATTTT
GA

Synonyms

Publications